{ "METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000169","ANALYSIS_ID":"AN000263","VERSION":"1","CREATED_ON":"2016-09-17"}, "PROJECT":{"PROJECT_TITLE":"Early in life exposures studies","PROJECT_SUMMARY":"Early in life exposures affect innate immune cells activation","INSTITUTE":"University of Michigan","DEPARTMENT":"Pediatrics","LABORATORY":"Hershenson Lab","LAST_NAME":"Popova","FIRST_NAME":"Antonia","ADDRESS":"Ann Arbor, MI","EMAIL":"antoniap@med.umich.edu","PHONE":"734-764-6736"}, "STUDY":{"STUDY_TITLE":"Baby Mice Hyperoxia treatment (G64-N.H-7d14d)","STUDY_TYPE":"In this experiment 2 day old baby mice were exposed to hyperoxia (75% O2) for 14 days. Control baby mice were housed in room air (normoxia). Plasma and lavage fluid (BALF) were harvested after 14 days of exposure (on Day of life","STUDY_SUMMARY":"In this experiment 2 day old baby mice were exposed to hyperoxia (75% O2) for 14 days. Control baby mice were housed in room air (normoxia). Plasma and lavage fluid (BALF) were harvested after 14 days of exposure (on Day of life","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@umich.edu","PHONE":"-","NUM_GROUPS":"1","TOTAL_SUBJECTS":"16"}, "SUBJECT":{"SUBJECT_TYPE":"-","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090"}, "SUBJECT_SAMPLE_FACTORS":[ { "Subject ID":"SU0005232", "Sample ID":"S00016724", "Factors":{"Type":"BALF","Condition":"Hyperoxia"} }, { "Subject ID":"SU0005233", "Sample ID":"S00016725", "Factors":{"Type":"BALF","Condition":"Hyperoxia"} }, { "Subject ID":"SU0005234", "Sample ID":"S00016726", "Factors":{"Type":"BALF","Condition":"Hyperoxia"} }, { "Subject ID":"SU0005235", "Sample ID":"S00016727", "Factors":{"Type":"BALF","Condition":"Hyperoxia"} }, { "Subject ID":"SU0005228", "Sample ID":"S00016720", "Factors":{"Type":"BALF","Condition":"Normoxia"} }, { "Subject ID":"SU0005229", "Sample ID":"S00016721", "Factors":{"Type":"BALF","Condition":"Normoxia"} }, { "Subject ID":"SU0005230", "Sample ID":"S00016722", "Factors":{"Type":"BALF","Condition":"Normoxia"} }, { "Subject ID":"SU0005231", "Sample ID":"S00016723", "Factors":{"Type":"BALF","Condition":"Normoxia"} }, { "Subject ID":"SU0005232", "Sample ID":"S00016716", "Factors":{"Type":"Plasma","Condition":"Hyperoxia"} }, { "Subject ID":"SU0005233", "Sample ID":"S00016717", "Factors":{"Type":"Plasma","Condition":"Hyperoxia"} }, { "Subject ID":"SU0005234", "Sample ID":"S00016718", "Factors":{"Type":"Plasma","Condition":"Hyperoxia"} }, { "Subject ID":"SU0005235", "Sample ID":"S00016719", "Factors":{"Type":"Plasma","Condition":"Hyperoxia"} }, { "Subject ID":"SU0005228", "Sample ID":"S00016712", "Factors":{"Type":"Plasma","Condition":"Normoxia"} }, { "Subject ID":"SU0005229", "Sample ID":"S00016713", "Factors":{"Type":"Plasma","Condition":"Normoxia"} }, { "Subject ID":"SU0005230", "Sample ID":"S00016714", "Factors":{"Type":"Plasma","Condition":"Normoxia"} }, { "Subject ID":"SU0005231", "Sample ID":"S00016715", "Factors":{"Type":"Plasma","Condition":"Normoxia"} } ], "COLLECTION":{"COLLECTION_SUMMARY":"-","SAMPLE_TYPE":"Blood plasma, Bronchoalveolar Lavage Fluid"}, "TREATMENT":{"TREATMENT_SUMMARY":"-"}, "SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"Gly-TCA-nucleotides_analysis_protocol-2015-03-09.docx"}, "CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"HILIC","INSTRUMENT_NAME":"Agilent 1260","COLUMN_NAME":"Phenomenex Luna NH2 (150 x 1mm, 3um)","METHODS_ID":"AQM015","METHODS_FILENAME":"QQQ-ATP,ADP,AMP,A-Insert.m"}, "ANALYSIS":{"ANALYSIS_TYPE":"MS","LABORATORY_NAME":"MRC2 (University of Michigan)","ACQUISITION_PARAMETERS_FILE":"QQQ-ATP,ADP,AMP,A-Insert.m","PROCESSING_PARAMETERS_FILE":"EX00371-Nucleotides-Quant.m"}, "MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 6520 QTOF","INSTRUMENT_TYPE":"QTOF","MS_TYPE":"ESI","ION_MODE":"NEGATIVE"}, "MS_METABOLITE_DATA":{ "Units":"mM", "Data":[{"Metabolite":"Adenosine","S00016724":"0.7900","S00016725":"0.1100","S00016726":"0.2900","S00016727":"0.6200","S00016720":"0.5100","S00016721":"0.6500","S00016722":"1.4200","S00016723":"0.4500","S00016716":"9.8600","S00016717":"8.5600","S00016718":"7.2600","S00016719":"11.8200","S00016712":"11.8600","S00016713":"7.2100","S00016714":"12.3100","S00016715":"7.1700"},{"Metabolite":"ADP","S00016724":"0.8100","S00016725":"0.1300","S00016726":"0.3500","S00016727":"0.8800","S00016720":"0.7200","S00016721":"0.8200","S00016722":"0.6100","S00016723":"0.4700","S00016716":"0.6500","S00016717":"6.7000","S00016718":"1.2100","S00016719":"0.6500","S00016712":"0.3900","S00016713":"0.5000","S00016714":"4.0200","S00016715":"0.4300"},{"Metabolite":"AMP","S00016724":"1.7800","S00016725":"0.0900","S00016726":"0.3200","S00016727":"1.0400","S00016720":"0.5700","S00016721":"0.7600","S00016722":"1.6900","S00016723":"0.5200","S00016716":"7.1000","S00016717":"21.5000","S00016718":"7.3100","S00016719":"8.3500","S00016712":"2.9500","S00016713":"2.5400","S00016714":"13.0500","S00016715":"0.2900"},{"Metabolite":"ATP","S00016724":"0.1900","S00016725":"0.0000","S00016726":"0.2000","S00016727":"0.2900","S00016720":"0.4400","S00016721":"0.4400","S00016722":"0.1900","S00016723":"0.4300","S00016716":"0.5500","S00016717":"1.7700","S00016718":"0.8500","S00016719":"0.5500","S00016712":"0.5700","S00016713":"0.5200","S00016714":"1.2800","S00016715":"0.9100"}], "Metabolites":[{"Metabolite":"Adenosine","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"60961","inchi_key":"","kegg_id":"","other_id":"","other_id_type":"UM_Target_ID"},{"Metabolite":"ADP","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"6022","inchi_key":"","kegg_id":"","other_id":"","other_id_type":"UM_Target_ID"},{"Metabolite":"AMP","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"6083","inchi_key":"","kegg_id":"","other_id":"","other_id_type":"UM_Target_ID"},{"Metabolite":"ATP","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5957","inchi_key":"","kegg_id":"","other_id":"","other_id_type":"UM_Target_ID"}] } }