Study-specific Protocols

These protocols have been submitted in association with experimental studies and projects. Browse and sort the full list of protocols, or use the form to search by keyword or phrase.

Click the File ID to access protocol details, including a list of studies that use that protocol and, for studies that have been released, an option to download the protocol.
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Fields searched: Analysis, Metabolite Class, Sample Type, Process, Institute, Comments (case insensitive)
File ID
Analysis
Metabolite Class
Sample Type
Process
Institute
447MS Zea mays, C. transvaalensis Zea mays (Maize kernel), C. transvaalensis (Plant root tissue) University of Florida
246MS Plant (Zea mays) metabolites Zea mays Sample prep/MS University of Florida
247MS Plant (Zea mays) metabolites Zea mays Sample prep/MS University of Florida
248MS Plant (Zea mays) metabolites Zea mays Sample prep/MS University of Florida
249MS Plant (Zea mays) metabolites Zea mays Sample prep/MS University of Florida
24NMR Worm metabolites Worm serum Sample prep/NMR University of Florida
95NMR Worm metabolites Worm serum Analysis/NMR University of Florida
201NMR/MS C.elegans metabolites worm pellets Collection University of Florida
203MS C.elegans metabolites worm pellets Collection University of Florida
445MS Sarcophaga crassipalpis Whole fly Analysis University of Florida
211NMR Drosophila metabolites Whole Bodies Collection University of Florida
210NMR Drosophila metabolites whole bodies collection University of Florida
212NMR Drosophila metabolites whole bodies Collection University of Florida
574MS Macaca mulatta metabolites Whole blood Sample Prep Emory University
577MS Macaca mulatta metabolites Whole blood Chromatography Emory University
581MS Macaca mulatta metabolites Whole blood Chromatography Emory University
604MS various various Sample Prep University of Michigan
475MS Homo sapiens urines Treatment UCDavis
433MS Human Urine and Plasma Analysis University of Florida
154MS Mouse (Mus musculus) urine Sample prep/HILIC-MS RTI International
235NMR Human metabolites urine Sample prep/NMR RTI International
237NMR Human metabolites urine Sample prep/NMR RTI International
428MS Human Umbilical cord plasma Collection UC Davis
499MS Mus musculus short chain fatty acids tumors Chromatography University of Michigan
440MS Homo sapiens tissue with different psoriasis status ANALYSIS University of Michigan
494MS Human metabolites Tissue slices Treatment University of Kentucky
495MS Human metabolites Tissue slices Collection University of Kentucky
496MS Human metabolites Tissue slices Sample prepration University of Kentucky
269MS Human metabolites Tissues Sample prep/MS University of Michigan
398MS Drosophila melanogaster tissues Analysis University of Michigan
153MS Mouse (Mus musculus) tissue Sample prep/MS RTI International
501MS Mus musculus tissue tissue Sample Prep University of Michigan
209NMR Synthetic metabolites Synthetic metabolites mixture Sample prep/NMR University of Florida
432MS Streptococcus mutans cells, Mus musculus muscle Streptococcus mutans cells, Mus musculus muscle Analysis University of Florida
546MS Human steatotic liver Analysis University of California, Davis
226MS Rattus norvegicus metabolites Sprague-Dawley Maternal: Adrenal, liver, placenta, amniotic fluid Sprague-Dawley Fetal: Male and female brain, male and female liver Sample prep/MS University of California, Davis
297MS Ovis aries metabolites smooth muscle cells Analysis University of Michigan
473MS Mus musculus small intestine Treatment UCDavis
490MS Cricetinae serum free from the DG44 CHO cell line Treatment University of California, Davis
385MS Rat and human metabolites serum and urine Collection Beijing Institute of Radiation Medicine
386MS Rat and human metabolites serum and urine Sample Prep Beijing Institute of Radiation Medicine
387MS Rat and human metabolites serum and urine Chromatography Beijing Institute of Radiation Medicine
224MS Human metabolites serum and liver Chromatography Mayo Clinic
227MS Mus musculus metabolites serum, adipose, heart, muscle and liver Sample prep/MS University of California, Davis
213MS Human metabolites Serum Sample Prep University of Michigan
231MS Human metabolites Serum Sample prep/MS University of California, Davis
234NMR Human metabolites Serum Sample prep/NMR RTI International
241MS Human metabolites Serum Sample prep/MS University of Florida
271MS Human metabolites Serum Sample prep/MS University of Michigan
176MS Human metabolites serum Sample prep/MS University of California, Davis
228NMR Human metabolites serum Sample prep/NMR RTI International
479MS Mus musculus serum sample prep UCDavis
480MS Mus musculus serum Treatment UCDavis
550MS human serum Collection University of California, Davis
606MS Human serum treatment University of California, Davis
607MS obese women serum Sample Prep University of California, Davis
182MS Human metabolites scalp biopsies Sample prep/MS Case Western Reserve University
614MS Mouse Retina and Plasma tissue Sample Prep University of Michigan
492MS Homo sapiens metabolites renal tissues samples sample prep University of California, Davis
493MS Homo sapiens metabolites renal tissues samples Treatment University of California, Davis
476MS Canis lupus familiaris rectum Treatment UCDavis
18MS Amino acids and other small molecules Rat plasma Analysis/LC-MS University of Michigan
19MS Amino acids and other small molecules Rat plasma Sample prep/LC-MS University of Michigan
20MS Amino acids and other small molecules Rat plasma Analysis/LC-MS University of Michigan
275MS Rat metabolites Rat hepatocyte Treatment Mayo Clinic
381MS Rattus norvegicus metabolites Rat brain tissue Chromatography University of Florida
384MS Rattus norvegicus metabolites Rat brain tissue Sample Prep University of Florida
555MS Rattus norvegicus metabolites Rat brain tissue Sample Prep University of Florida
239NMR Human metabolites Prostrate cells SamplePrep/NMR Purdue University North Central
474MS Mus musculus prostate Treatment UCDavis
588MS Macaca mulatta plasma samples analysis Emory University
429MS Mus musculus plasma, liver, hypothalmus, muscle, adipose Treatment UC Davis
423MS Rattus norvegicus Plasma and lung Chromatography University of California Davis
527MS Mus musculus/Homo sapiens Plasma and bronchoalveolar lavage fluid (BALF) Chromatography University of Michigan
408MS Homo sapiens Plasma Analysis University of Michigan
409MS Homo sapiens Plasma Analysis University of Michigan
304MS Human metabolites Plasma Analysis University of Michigan
397MS Equus caballus (horse) metabolites Plasma Treatment University of Florida
471MS Bos taurus Plasma Treatment UCDavis
472MS Bos taurus Plasma sample prep UCDavis
608MS Human Plasma Analysis University of Michigan
120MS Mice metabolites plasma Sample prep/MS University of California, Davis
163MS Mouse (Mus musculus) metabolites plasma Sample prep/MS University of California, Davis
243MS Human metabolites plasma Sample prep/MS RTI International
244MS Human metabolites plasma Sample prep/MS RTI International
309MS Rattus Metabolites plasma Analysis University of Michigan
329MS Mus musculus metabolites plasma Analysis University of Michigan
434MS Bos taurus, Mus Musculus, Homo sapiens (Plasma) plasma Analysis University of Florida
551MS Homo sapiens plasma Collection University of California, Davis
610MS human plasma Analysis University of Michigan
456MS Arabidopsis thaliana plant cells Treatment UCDavis
457MS Arabidopsis thaliana plant cells Sample Prep UCDavis
467MS Arabidopsis thaliana plant cells Chromatography UCDavis
156MS Macaca fascicularis metabolites ovary tissue Sample prep/MS RTI International
160MS Macaca fascicularis (cynomolgus monkeys) metabolites Ovarian samples Sample prep/MS RTI International
190MS human metabolites ovarian cancer cells Chromatorgraphy University of California, Davis
191MS human metabolites ovarian cancer cells Collection University of California, Davis
192MS human metabolites ovarian cancer cells Sample Prep University of California, Davis
193MS human metabolites ovarian cancer cells Sample Prep University of California, Davis
194MS human metabolites ovarian cancer cells Collection University of California, Davis
232NMR Mus musculus metabolites myocardial endothelial cells (MEC) samples Sample prep/NMR RTI International
431MS Mus musculus, Homo Sapien Mus musculus (muscle tissue), Human (Liver) Analysis University of Florida
443MS Mus musculus, Rattus norvegicus Mus musculus (Epididymal white adipose tissue, liver, Inguinal white adipose tissue , plasma ) Rattus norvegicus (Tissues) ANALYSIS University of Michigan
268MS Mice muscle tissue Treatment Mayo Clinic
322MS Mus musculus metabolites Muscles Analysis University of Michigan
38NMR Amino acids and other small molecules Mouse urine Sample prep/NMR RTI International
47NMR Amino acids and other small molecules Mouse urine Sample prep/NMR RTI International
441MS Mus musculus, Homo sapiens mouse stool samples, human blood ANALYSIS University of Michigan
41NMR Amino acids and other small molecules Mouse serum Sample prep/NMR RTI International
44NMR Amino acids and other small molecules Mouse serum Sample prep/NMR RTI International
46NMR Amino acids and other small molecules Mouse serum Sample prep/NMR RTI International
37NMR Amino acids and other small molecules Mouse liver Sample prep/NMR RTI International
40NMR Amino acids and other small molecules Mouse liver Sample prep/NMR RTI International
43NMR Amino acids and other small molecules Mouse liver Sample prep/NMR RTI International
49NMR Amino acids and other small molecules Mouse liver Sample prep/NMR RTI International
66NMR Amino acids and other small molecules Mouse liver Sample prep/NMR RTI International
36NMR Amino acids and other small molecules Mouse cecal contents Sample prep/NMR RTI International
39NMR Amino acids and other small molecules Mouse cecal contents Sample prep/NMR RTI International
42NMR Amino acids and other small molecules Mouse cecal contents Sample prep/NMR RTI International
48NMR Amino acids and other small molecules Mouse cecal contents Sample prep/NMR RTI International
586MS mouse mouse adipose tissue Chromatography University of Michigan
68MS Over 1000 primary metabolites below 1000 Da Metabolite reference standards Chromatography/MS UC Davis
222MS Human metabolites media collection from plate Treatment/MS University of Kentucky
218MS Human metabolites media collection from plate Sample prep/MS University of Kentucky
223MS Human metabolites media collection from plate Collection/MS University of Kentucky
219MS Human metabolites media collection from plate Sample prep/MS University of Kentucky
88NMR Mayfly metabolites Mayfly larvae Sample prep/NMR RTI International
448MS Zea mays maize starchy endosperm ANALYSIS University of Florida
444MS Zea mays Maize kernel, maize starchy endosperm ANALYSIS University of Florida
332MS Mus musculus metabolites Macrophages Analysis University of Michigan
548MS human lung tissue sample prep UCDavis
157MS Mouse (Mus musculus) metabolites Lung samples Sample prep/MS RTI International
593MS Mus musculus Lung/Liver/Kidney tissue Chromatography University of California Davis
437MS Mus musculus / Homo sapiens Lung Fiboblasts Analysis University of Michigan
85NMR Human metabolite Lung cancer cells Sample prep/NMR RTI International
599MS Liver tissue from mice Liver tissue from mice Sample Prep University of California, Davis
601MS Liver tissue from mice Liver tissue from mice Chromatography University of California, Davis
238MS Mus musculus metabolites Liver, small and large intestine, and feces SamplePrep/MS Pennsylvania State University
379MS Mus Musculus metabolites liver, serum Sample Prep Penn State University
187MS mouse metabolites liver samples Sample Prep University of California, Davis
188MS mouse metabolites liver samples Chromatography University of California, Davis
418MS Mus musculus Liver, MFE Cells Analysis University of Michigan
481MS Mus musculus liver/bone marrow Collection University of Florida
318MS Mus musculus metabolites Liver and Plasma Analysis University of Michigan
319MS Mus musculus metabolites Liver and Plasma Analysis University of Michigan
320MS Mus musculus metabolites Liver and Plasma Analysis University of Michigan
315MS Mus musculus metabolites Liver Analysis University of Michigan
341MS Mus musculus metabolites Liver Analysis University of Michigan
342MS Mus musculus metabolites Liver Analysis University of Michigan
313MS Mus musculus metabolites liver Analysis University of Michigan
452MS Homo sapiens liver Chromatography University of Florida
622MS Mouse Kidney tissue Sample Prep University of California, Davis
520MS Homo sapiens intestine tissue Chromatography University of Michigan
478MS Canis lupus familiaris intestine Chromatography UCDavis
308MS Gallus gallus metabolites intestinal secretions Analysis University of Michigan
531MS Rattus norvegicus Intestinal lipid sample prep University of Michigan
35MS Amino acids and other small molecules Insect larvae Sample prep/MS RTI International
589MS Mus musculus tissue hypothalamus sample prep University of California Davis
590MS Mus musculus tissue hypothalamus sample prep University of California Davis
23NMR Human metabolites Human urine Sample prep/NMR RTI International
28NMR Human metabolites Human urine Sample prep/NMR RTI International
32NMR Human metabolites Human urine Sample prep/NMR RTI International
96MS Human metabolites Human plasma Sample prep/LC-MS University of Michigan
102MS Human metabolites Human plasma Analysis/LC-MS University of Michigan
67MS Human metabolites Human muscle Sample prep/MS RTI International
87NMR Human metabolite Human infant frozen urine Sample prep/NMR RTI International
86NMR Human metabolite Human fetal cord blood serum Sample prep/NMR RTI International
130MS Human metabolites Human Fat Tissue Sample prep/MS University of California, Davis
14MS Human metabolites Human cells Analysis/LC-MS University of Michigan
16MS Human metabolites Human cells Sample prep/LC-MS University of Michigan
17MS Human metabolites Human cells Analysis/LC-MS University of Michigan
116MS Human metabolites Human breast normal/cancer cells Sample prep/LC-MS RTI International
79MS Human metaboiltes Human Breast cells Sample prep/MS RTI International
108MS Human metabolites Human breast cancer cells Sample prep/LC-MS University of Michigan
109MS Human metabolites Human breast cancer cells Analysis/LC-MS University of Michigan
165NMR/MS Human metabolites human A549 cells Sample treatment/MS/NMR University of Kentucky
166NMR/MS Human metabolites human A549 cells Sample collection/MS/NMR University of Kentucky
179NMR/MS Human metabolites human A549 cells Sample prep/MS/NMR University of Kentucky
180NMR/MS Human metabolites human A549 cells Sample prep/MS/NMR University of Kentucky
181NMR/MS Human metabolites human A549 cells Sample prep/MS/NMR University of Kentucky
552MS Human HL-60 cells Sample Prep University of Florida
482MS Mus musculus hind brain tissue Chromatography University at Buffalo
483MS Mus musculus hind brain tissue Collection University at Buffalo
233NMR Camellia sinensis metabolites green tea capsule Sample prep/NMR RTI International
534MS Mus musculus glioma cell lines and tumnor tissue sample prep University of Michigan
535MS Mus musculus glioma cell lines and tumnor tissue sample prep University of Michigan
526MS Homo sapiens Glioblastoma cells analysis University of Michigan
119NMR Mouse metabolites Frozen fecal samples Sample prep/NMR RTI International
556MS Drosophila melanogaster metabolites fly brain tissue Chromatography University of Michigan
557MS Drosophila melanogaster metabolites fly brain tissue Chromatography University of Michigan
558MS Drosophila melanogaster metabolites fly brain tissue Sample Prep University of Michigan
316MS Mus musculus metabolites Flushing Analysis University of Michigan
118MS Mice metabolites FLT3-TID/MLL-ENL mice myeloid cells Sample prep/MS RTI International
305MS Human metabolites Feces Analysis University of Michigan
306MS Human metabolites Feces Analysis University of Michigan
307MS Human metabolites Feces Analysis University of Michigan
162MS Mouse (Mus musculus) metabolites feces Sample prep/MS RTI International
310MS Rattus Metabolites feces Analysis University of Michigan
311MS Mus Musculus Metabolites feces Analysis University of Michigan
312MS Mus Musculus Metabolites feces Analysis University of Michigan
345MS Human metabolites feces Analysis University of Michigan
403MS Homo sapiens feces Analysis University of Michigan
404MS Homo sapiens feces Analysis University of Michigan
405MS Homo sapiens feces Analysis University of Michigan
338MS Mus metabolites Faces Analysis University of Michigan
324MS Mus musculus metabolites Face Analysis University of Michigan
326MS Mus musculus metabolites Face Analysis University of Michigan
519NMR felis catus Exhaled breath condensate and bronchoalveolar lavage fluid sample prep University of Missouri-Columbia
285MS Ecoli metabolites Ecoli cells Analysis University of Michigan
135 Human metabolites CSF Sample prep/MS University of California, Davis
236NMR Human metabolites cord blood Sample prep/NMR RTI International
438MS Mus musculus/Homo sapiens cells, skeletal muscles, Lung Fibroblasts, plasma Analysis University of Michigan
245MS Human metabolites Cells Sample prep/MS University of Florida
225MS S.enterica and E.coli strain metabolites cells Analysis/MS University of California, Davis
261MS Human metabolites cells Acquisition Parameters File University of Michigan
262MS Human metabolites cells Processing Parameters File University of Michigan
263MS Human metabolites cells Sample prep/MS University of Michigan
264MS Human metabolites cells Processing Parameters File University of Michigan
265MS Human metabolites cells Analysis University of Michigan
266MS Human metabolites cells Analysis University of Michigan
267MS Human metabolites cells Analysis University of Michigan
278MS Human metabolites cells Analysis University of Michigan
282MS Mus musculus metabolites cells Analysis University of Florida
290MS Mus musculus metabolites cells Analysis University of Michigan
295MS Mus musculus metabolites cells Analysis University of Michigan
296MS Mus musculus metabolites cells Analysis University of Michigan
298MS Mus musculus metabolites cells Analysis University of Michigan
321MS Human metabolites cells Analysis University of Michigan
335MS Mus musculus metabolites cells Analysis University of Michigan
344MS Human metabolites cells Analysis University of Michigan
449MS Candida albicans cells ANALYSIS University of Florida
454MS Bacteria cells Treatment UCDavis
455MS Synechococcus sp CC9605 cells Treatment UCDavis
503MS Homo sapiens cells cells sample prep University of California, Davis
340MS Mus musculus metabolites Cell Line Analysis University of Michigan
406MS Homo sapiens Cell Line Analysis University of Michigan
138MS Human metabolites Cell Culture Media Sample prep/GCTOF-MS University of California, Davis
251MS Human metabolites cell culture Collection University of Kentucky
252MS Human metabolites cell culture Treatment University of Kentucky
254MS Human metabolites cell culture Sample prep/MS University of Kentucky
439MS Homo sapiens,Gallus gallus Cecum, fecal bile acids, Analysis University of Michigan
317MS Mus musculus metabolites Cecum Analysis University of Michigan
337MS Mus musculus metabolites Cecum Analysis University of Michigan
330MS Mus musculus metabolites cecum Analysis University of Michigan
469MS Mus musculus Cecal contents sample prep UCDavis
229NMR Human metabolites Caco-2 cell culture Sample prep/NMR RTI International
489MS Homo sapiens lung tissue Bronchoalveolar lavage supernatant Treatment University of California, Davis
327MS Human metabolites Bronchoalveolar Lavage Fluid Analysis University of Michigan
122MS Human metabolites breast cells Sample prep/MS University of California, Davis
537MS Mus musculus Bone marrow macrophage Collection University of California, Davis
273MS Mus musculus metabolites bone marrow cells Sample prep/MS New York University
299MS Mus musculus metabolites bone marrow cells Analysis University of Michigan
323MS Mus musculus metabolites bone marrow cells Analysis University of Michigan
242MS Human metabolites blood samples Sample prep/MS University of Florida
274NMR/MS Human metabolites blood samples Sample prep/MS Mayo Clinic
410MS Mus musculus Blood plasma, Bronchoalveolar Lavage Fluid Analysis University of Michigan
491MS Rattus norvegicus Blood collected by heart puncture Treatment University of California, Davis
214MS Mirounga angustirostris metabolites Blood Collection University of California, Davis
215MS Mirounga angustirostris metabolites Blood Collection University of California, Davis
504MS Homo sapiens metabolites Blood Treatment University of California, Davis
505MS Homo sapiens metabolites Blood Treatment University of California, Davis
603MS Human Blood Chromatography USDA
559MS Homo sapiens metabolites blood Collection University of Florida
560MS Homo sapiens metabolites blood Treatment University of Florida
594NMR Mus musculus blood Collection University of Michigan
595NMR Mus musculus blood Collection University of Michigan
484MS Mus musculus tissue antrum, corpus glands Treatment University of California, Davis
450MS Homo sapiens (AML cell lines) AML cell lines Treatment University of Florida
451MS Homo Sapien (AML cell lines) AML cell lines Collection University of Florida
453MS
497MS Collection University of Kentucky
498MS Sample prepration University of Kentucky

Number of records: 272

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