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MB Sample ID: SA154029
Local Sample ID: | ncbimw_1023 |
Subject ID: | SU001748 |
Subject Type: | Bacteria |
Subject Species: | Bacteria |
Subject Comments: | 178 bacterial strains |
Select appropriate tab below to view additional metadata details:
Subject:
Subject ID: | SU001748 |
Subject Type: | Bacteria |
Subject Species: | Bacteria |
Subject Comments: | 178 bacterial strains |
Factors:
Local Sample ID | MB Sample ID | Factor Level ID | Level Value | Factor Name |
---|---|---|---|---|
ncbimw_1023 | SA154029 | FL018048 | supernatant | sample_type |
ncbimw_1023 | SA154029 | FL018048 | mm | media |
ncbimw_1023 | SA154029 | FL018048 | Eggerthella lenta DSMZ 2243 | taxonomy |
ncbimw_1023 | SA154029 | FL018048 | - | strain |
Collection:
Collection ID: | CO001741 |
Collection Summary: | Please see the methods associated with this submission. In short, this data is from mono-cultured anaerobic gut bacteria grown in a variety of different media, harvested, and subjected to multiple LCMS detection methods. |
Sample Type: | Bacterial cells |
Treatment:
Treatment ID: | TR001761 |
Treatment Summary: | Please see the methods associated with this submission. |
Sample Preparation:
Sampleprep ID: | SP001754 |
Sampleprep Summary: | Please see the methods associated with this submission. |
Combined analysis:
Analysis ID | AN002727 | AN002728 | AN002729 |
---|---|---|---|
Analysis type | MS | MS | MS |
Chromatography type | Reversed phase | Reversed phase | HILIC |
Chromatography system | Agilent 1290 Infinity II | Agilent 1290 Infinity II | Agilent 1290 Infinity II |
Column | Waters Acquity BEH C18 (100 x 2mm,1.7um) | Waters Acquity BEH C18 (100 x 2mm,1.7um) | Waters Acquity BEH Amide (150 x 2.1mm,1.7um) |
MS Type | ESI | ESI | ESI |
MS instrument type | QTOF | QTOF | QTOF |
MS instrument name | Agilent 6540 QTOF | Agilent 6540 QTOF | Agilent 6540 QTOF |
Ion Mode | POSITIVE | NEGATIVE | POSITIVE |
Units | counts (area) | counts (area) | counts (area) |
Chromatography:
Chromatography ID: | CH002013 |
Chromatography Summary: | Please see `methods.pdf` associated with this submission for full details. In short, this analysis is processed data associated with standard reverse phase LCMS with positive ionization. |
Instrument Name: | Agilent 1290 Infinity II |
Column Name: | Waters Acquity BEH C18 (100 x 2mm,1.7um) |
Column Temperature: | 40 |
Flow Rate: | 350 uL/min |
Solvent A: | 100% water; 0.1% formic acid |
Solvent B: | 100% methanol; 0.1% formic acid |
Capillary Voltage: | 4000 |
Chromatography Type: | Reversed phase |
Chromatography ID: | CH002014 |
Chromatography Summary: | Please see `methods.pdf` associated with this submission for full details. In short, this analysis is processed data associated with standard reverse phase LCMS with negative ionization. |
Instrument Name: | Agilent 1290 Infinity II |
Column Name: | Waters Acquity BEH C18 (100 x 2mm,1.7um) |
Column Temperature: | 40 |
Flow Rate: | 350 uL/min |
Solvent A: | 100% water; 6.5 mM ammonium bicarbonate |
Solvent B: | 95% methanol/5% water; 6.5 mM ammonium bicarbonate |
Capillary Voltage: | 4000 |
Chromatography Type: | Reversed phase |
Chromatography ID: | CH002015 |
Chromatography Summary: | Please see `methods.pdf` associated with this submission for full details. In short, this analysis is processed data associated with HILIC LCMS with positive ionization. |
Instrument Name: | Agilent 1290 Infinity II |
Column Name: | Waters Acquity BEH Amide (150 x 2.1mm,1.7um) |
Column Temperature: | 40 |
Flow Rate: | 400 uL/min |
Solvent A: | 100% water; 0.125% formic acid; 10 mM ammonium formate |
Solvent B: | 95% acetonitrile/5% water; 0.125% formic acid; 10 mM ammonium formate |
Capillary Voltage: | 4000 |
Chromatography Type: | HILIC |
MS:
MS ID: | MS002524 |
Analysis ID: | AN002727 |
Instrument Name: | Agilent 6540 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
MS Comments: | Please see `methods.pdf` associated with this submission. |
Ion Mode: | POSITIVE |
Capillary Voltage: | 4000 |
Dry Gas Temp: | 250C |
Fragment Voltage: | 140V |
MS ID: | MS002525 |
Analysis ID: | AN002728 |
Instrument Name: | Agilent 6540 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
MS Comments: | Please see `methods.pdf` associated with this submission. |
Ion Mode: | NEGATIVE |
Capillary Voltage: | 4000 |
Dry Gas Temp: | 250C |
Fragment Voltage: | 140V |
MS ID: | MS002526 |
Analysis ID: | AN002729 |
Instrument Name: | Agilent 6540 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
MS Comments: | Please see `methods.pdf` associated with this submission. |
Ion Mode: | POSITIVE |
Capillary Voltage: | 4000 |
Dry Gas Temp: | 250C |
Fragment Voltage: | 140V |