Summary of Study ST000236

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000189. The data can be accessed directly via it's Project DOI: 10.21228/M8TS3D This work is supported by NIH grant, U2C- DK119886.

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Study IDST000236
Study TitleQuick Comparison of Urine Metabolites in Human and SD Rats of Different Sex by Untargeted UPLC-TOFMS and In-house Software Platform
Study TypeBiomarker Discovery
Study SummaryHuman urine samples were collected before breakfast from 14 male and 13 female Chinese post-graduate students, age from 23 to 29, on the morning of sample collection day. Male (n=8) and female (n=8) SD rats weighing between 220 and 250g were used. On the morning of sample collection day, each rat was deprived of food and put in metabolic cage for 24h urine collection. All urine samples were frozen at -80°C prior to analysis.
Institute
Beijing Institute of Radiation Medicine
DepartmentDepartment of Pharmacology and Toxicology
Last NameLiang
First NameQiande
Address27 Taiping Road, Beijing, P.R.China
Emailliangqiande@yeah.net
Submit Date2015-08-09
Num Groups4
Total Subjects43
Raw Data File Type(s)raw(Waters)
Analysis Type DetailLC-MS
Release Date2015-09-09
Release Version1
Qiande Liang Qiande Liang
https://dx.doi.org/10.21228/M8TS3D
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

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Combined analysis:

Analysis ID AN000357 AN000358 AN000359 AN000360 AN000361 AN000362
Analysis type MS MS MS MS MS MS
Chromatography type Reversed phase Reversed phase Reversed phase Reversed phase Reversed phase Reversed phase
Chromatography system Waters Acquity Waters Acquity Waters Acquity Waters Acquity Waters Acquity Waters Acquity
Column Waters Acquity HSS T3 (100 x 2.1mm, 1.8um) Waters Acquity HSS T3 (100 x 2.1mm, 1.8um) Waters Acquity HSS T3 (100 x 2.1mm, 1.8um) Waters Acquity HSS T3 (100 x 2.1mm, 1.8um) Waters Acquity HSS T3 (100 x 2.1mm, 1.8um) Waters Acquity HSS T3 (100 x 2.1mm, 1.8um)
MS Type ESI ESI ESI ESI ESI ESI
MS instrument type QTOF QTOF QTOF QTOF QTOF QTOF
MS instrument name Waters Synapt-HDMS Waters Synapt-HDMS Waters Synapt-HDMS Waters Synapt-HDMS Waters Synapt-HDMS Waters Synapt-HDMS
Ion Mode POSITIVE POSITIVE POSITIVE NEGATIVE NEGATIVE NEGATIVE
Units Peak Height Peak Height Peak Height Peak Height Peak Height Peak Height

Chromatography:

Chromatography ID:CH000264
Chromatography Summary:Untargeted UPLC-TOFMS
Methods Filename:3_CHR_PROT.pdf
Instrument Name:Waters Acquity
Column Name:Waters Acquity HSS T3 (100 x 2.1mm, 1.8um)
Column Temperature:24?
Flow Gradient:Isocratic 2% B (01 min), linear gradient from 2% to 5% B (12 min), 5% to 12% B (25 min), 12% to 20% B (510 min), 20% to 30% B (1012 min), 30% to 50% B (1213 min), 50% to 100% B (1315 min), isocratic 100% B for 1min, then back to 2% B in 1 min and isocratic 2% B for 3min before next run
Flow Rate:0.5 ml/min
Injection Temperature:24?
Internal Standard:Amygdalin
Sample Injection:8?L
Sampling Cone:40V
Solvent A:Water containing 0.1% formic acid
Solvent B:Acetonitrile containing 0.1% formic acid
Analytical Time:20min
Capillary Voltage:Positive ion mode:3kV; Negative ion mode: 2.9kV
Chromatography Type:Reversed phase
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