Summary of Study ST001654
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001060. The data can be accessed directly via it's Project DOI: 10.21228/M8PH55 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST001654 |
| Study Title | Metabolic profiling of plasma collected from Peromyscus leucopus and Mus musculus following LPS treatment |
| Study Type | Untargeted Metabolomic profiling |
| Study Summary | Small molecule metabolites were extracted from plasma from Peromyscus leucopus and Mus musculus BALB/c and analyzed by liquid chromatography couple with mass spectrometry (LC-MS). XCMS software was used for peak picking, grouping and retention time correction from LC-MS data and generated a molecular feature spreadsheet. Pathway way enrichment analysis was carried out using Mummichog pathway analysis software using data from feature table. |
| Institute | Colorado State University |
| Department | Microbiology, Immunology and Pathology |
| Laboratory | Belisle Lab |
| Last Name | Nurul |
| First Name | Islam |
| Address | 3185 Rampart Road, Fort Collins, CO 80521 |
| nurul.islam@colostate.edu | |
| Phone | 970 492 4249 |
| Submit Date | 2021-01-13 |
| Num Groups | 4 |
| Total Subjects | 40 |
| Num Males | 20 |
| Num Females | 20 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | mzML |
| Analysis Type Detail | LC-MS |
| Release Date | 2021-03-15 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Combined analysis:
| Analysis ID | AN002701 |
|---|---|
| Analysis type | MS |
| Chromatography type | Reversed phase |
| Chromatography system | Agilent 1260 |
| Column | Agilent Poroshell 120 EC-C8 (100 x 2.1mm,2.7um) |
| MS Type | ESI |
| MS instrument type | QTOF |
| MS instrument name | Agilent 6520 QTOF |
| Ion Mode | POSITIVE |
| Units | peak area |
Chromatography:
| Chromatography ID: | CH001993 |
| Instrument Name: | Agilent 1260 |
| Column Name: | Agilent Poroshell 120 EC-C8 (100 x 2.1mm,2.7um) |
| Column Temperature: | 50 |
| Flow Gradient: | non-linear gradient |
| Flow Rate: | 0.25 mL/min |
| Solvent A: | 100% water; 0.1% formic acid |
| Solvent B: | 100% acetonitrile; 0.1% formic acid |
| Chromatography Type: | Reversed phase |
