Summary of Study ST001654
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001060. The data can be accessed directly via it's Project DOI: 10.21228/M8PH55 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
| Study ID | ST001654 |
| Study Title | Metabolic profiling of plasma collected from Peromyscus leucopus and Mus musculus following LPS treatment |
| Study Type | Untargeted Metabolomic profiling |
| Study Summary | Small molecule metabolites were extracted from plasma from Peromyscus leucopus and Mus musculus BALB/c and analyzed by liquid chromatography couple with mass spectrometry (LC-MS). XCMS software was used for peak picking, grouping and retention time correction from LC-MS data and generated a molecular feature spreadsheet. Pathway way enrichment analysis was carried out using Mummichog pathway analysis software using data from feature table. |
| Institute | Colorado State University |
| Department | Microbiology, Immunology and Pathology |
| Laboratory | Belisle Lab |
| Last Name | Nurul |
| First Name | Islam |
| Address | 3185 Rampart Road, Fort Collins, CO 80521 |
| nurul.islam@colostate.edu | |
| Phone | 970 492 4249 |
| Submit Date | 2021-01-13 |
| Num Groups | 4 |
| Total Subjects | 40 |
| Num Males | 20 |
| Num Females | 20 |
| Raw Data Available | Yes |
| Raw Data File Type(s) | mzML |
| Analysis Type Detail | LC-MS |
| Release Date | 2021-03-15 |
| Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Factors:
Subject type: Mammal; Subject species: Mus musculus;Peromyscus leucopus (Factor headings shown in green)
| mb_sample_id | local_sample_id | Sample Type |
|---|---|---|
| SA151775 | Peromyscus_22275_Control_Plasma | control (saline) |
| SA151776 | Mus_F101_Control_Plasma | control (saline) |
| SA151777 | Mus_106_Control_Plasma | control (saline) |
| SA151778 | Mus_120_Control_Plasma | control (saline) |
| SA151779 | Mus_116_Control_Plasma | control (saline) |
| SA151780 | Mus_102_Control_Plasma | control (saline) |
| SA151781 | Mus_M404_Control_Plasma | control (saline) |
| SA151782 | Mus_115_Control_Plasma | control (saline) |
| SA151783 | Mus_F302_Control_Plasma | control (saline) |
| SA151784 | Peromyscus_22335_Control_Plasma | control (saline) |
| SA151785 | Peromyscus_22341_Control_Plasma | control (saline) |
| SA151786 | Peromyscus_22321_Control_Plasma | control (saline) |
| SA151787 | Peromyscus_22315_Control_Plasma | control (saline) |
| SA151788 | Peromyscus_22277_Control_Plasma | control (saline) |
| SA151789 | Peromyscus_22282_Control_Plasma | control (saline) |
| SA151790 | Peromyscus_22279_Control_Plasma | control (saline) |
| SA151791 | Mus_109_LPS_Plasma | lipopolysaccharide |
| SA151792 | Mus_107_LPS_Plasma | lipopolysaccharide |
| SA151793 | Mus_M205_LPS_Plasma | lipopolysaccharide |
| SA151794 | Mus_108_LPS_Plasma | lipopolysaccharide |
| SA151795 | Mus_M407_LPS_Plasma | lipopolysaccharide |
| SA151796 | Mus_F303_LPS_Plasma | lipopolysaccharide |
| SA151797 | Peromyscus_22258_LPS_Plasma | lipopolysaccharide |
| SA151798 | Mus_M406_LPS_Plasma | lipopolysaccharide |
| SA151799 | Mus_118_LPS_Plasma | lipopolysaccharide |
| SA151800 | Peromyscus_22319_LPS_Plasma | lipopolysaccharide |
| SA151801 | Peromyscus_22284_LPS_Plasma | lipopolysaccharide |
| SA151802 | Peromyscus_22316_LPS_Plasma | lipopolysaccharide |
| SA151803 | Peromyscus_22325_LPS_Plasma | lipopolysaccharide |
| SA151804 | Peromyscus_22327_LPS_Plasma | lipopolysaccharide |
| SA151805 | Peromyscus_22339_LPS_Plasma | lipopolysaccharide |
| SA151806 | Peromyscus_22292_LPS_Plasma | lipopolysaccharide |
| SA151807 | Peromyscus_22289_LPS_Plasma | lipopolysaccharide |
| SA151808 | Mus_104_LPS_Plasma | lipopolysaccharide |
| SA151809 | Mus_105_LPS_Plasma | lipopolysaccharide |
| SA151810 | Mus_103_LPS_Plasma | lipopolysaccharide |
| SA151811 | Mus_101_LPS_Plasma | lipopolysaccharide |
| SA151812 | Peromyscus_22278_LPS_Plasma | lipopolysaccharide |
| SA151813 | Peromyscus_22281_LPS_Plasma | lipopolysaccharide |
| SA151814 | Peromyscus_22332_LPS_Plasma | lipopolysaccharide |
| SA151768 | Pooled_QC03 | Pooled quality control sample |
| SA151769 | Pooled_QC01 | Pooled quality control sample |
| SA151770 | Pooled_QC04 | Pooled quality control sample |
| SA151771 | Pooled_QC02 | Pooled quality control sample |
| SA151772 | Pooled_QC05 | Pooled quality control sample |
| SA151773 | Pooled_QC07 | Pooled quality control sample |
| SA151774 | Pooled_QC06 | Pooled quality control sample |
| Showing results 1 to 47 of 47 |
