Summary of Study ST001654
This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR001060. The data can be accessed directly via it's Project DOI: 10.21228/M8PH55 This work is supported by NIH grant, U2C- DK119886.
See: https://www.metabolomicsworkbench.org/about/howtocite.php
This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.
Study ID | ST001654 |
Study Title | Metabolic profiling of plasma collected from Peromyscus leucopus and Mus musculus following LPS treatment |
Study Type | Untargeted Metabolomic profiling |
Study Summary | Small molecule metabolites were extracted from plasma from Peromyscus leucopus and Mus musculus BALB/c and analyzed by liquid chromatography couple with mass spectrometry (LC-MS). XCMS software was used for peak picking, grouping and retention time correction from LC-MS data and generated a molecular feature spreadsheet. Pathway way enrichment analysis was carried out using Mummichog pathway analysis software using data from feature table. |
Institute | Colorado State University |
Department | Microbiology, Immunology and Pathology |
Laboratory | Belisle Lab |
Last Name | Nurul |
First Name | Islam |
Address | 3185 Rampart Road, Fort Collins, CO 80521 |
nurul.islam@colostate.edu | |
Phone | 970 492 4249 |
Submit Date | 2021-01-13 |
Num Groups | 4 |
Total Subjects | 40 |
Num Males | 20 |
Num Females | 20 |
Raw Data Available | Yes |
Raw Data File Type(s) | mzML |
Analysis Type Detail | LC-MS |
Release Date | 2021-03-15 |
Release Version | 1 |
Select appropriate tab below to view additional metadata details:
Combined analysis:
Analysis ID | AN002701 |
---|---|
Analysis type | MS |
Chromatography type | Reversed phase |
Chromatography system | Agilent 1260 |
Column | Agilent Poroshell 120 EC-C8 (100 x 2.1mm,2.7um) |
MS Type | ESI |
MS instrument type | QTOF |
MS instrument name | Agilent 6520 QTOF |
Ion Mode | POSITIVE |
Units | peak area |
MS:
MS ID: | MS002499 |
Analysis ID: | AN002701 |
Instrument Name: | Agilent 6520 QTOF |
Instrument Type: | QTOF |
MS Type: | ESI |
MS Comments: | An aliquot of sample was injected into LC-MS to acquire data in positive mode. Data acquisition and analysis were achieved using MassHunter software. |
Ion Mode: | POSITIVE |
Capillary Voltage: | 4000V |
Dry Gas Temp: | 300 degree C |
Fragment Voltage: | 120V |
Gas Pressure: | 45 |