Summary of Study ST000746

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000538. The data can be accessed directly via it's Project DOI: 10.21228/M84687 This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST000746
Study TitleMetabolomics of mice inoculated with human stool (part II)
Study TypeMS analysis
Study SummaryBlood was collected from the facial vein of humanized mice immediately prior to euthansia via CO2 inhalation. Blood sat at room temperature for 20 minutes, and then was centrifuged at 12000g for 10 minutes at 4 C. Serum was removed to a new eppendorf tube and immediately placed on ice, and then samples were subsequently stored at - 20 C until the present.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-06-19
Num Groups7
Total Subjects2
Raw Data AvailableYes
Raw Data File Type(s)d
Analysis Type DetailLC-MS
Release Date2017-12-06
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M84687
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000538
Project DOI:doi: 10.21228/M84687
Project Title:Metabolomics of mice inoculated with human microbiota
Project Type:MS analysis
Project Summary:Metabolomics of mice inoculated with human microbiota
Institute:Cornell University
Department:Microbiology
Laboratory:Ley Lab
Last Name:Ley
First Name:Ruth
Address:Ithaca, NY
Email:rel222@cornell.edu
Phone:607-255-4954

Subject:

Subject ID:SU000769
Subject Type:Mouse
Subject Species:Mus musculus
Taxonomy ID:10090
Species Group:Mammal

Factors:

Subject type: Mouse; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id Treatment Group
SA041355S00014432minus
SA041356S00014433minus
SA041357S00014434minus
SA041358S00014431minus
SA041359S00014428minus
SA041360S00014435minus
SA041361S00014429minus
SA041362S00014430minus
SA041363S00014440minus
SA041364S00014442minus
SA041365S00014441minus
SA041366S00014443minus
SA041314S00014478NH
SA041315S00014467NH
SA041316S00014477NH
SA041317S00014476NH
SA041318S00014466NH
SA041319S00014482NH
SA041320S00014479NH
SA041321S00014486NH
SA041322S00014485NH
SA041323S00014484NH
SA041324S00014483NH
SA041325S00014487NH
SA041326S00014464NL
SA041327S00014465NL
SA041328S00014463NL
SA041329S00014460NL
SA041330S00014454NL
SA041331S00014459NL
SA041332S00014461NL
SA041333S00014462NL
SA041334S00014473OH
SA041335S00014474OH
SA041336S00014475OH
SA041337S00014480OH
SA041338S00014481OH
SA041339S00014468OH
SA041340S00014472OH
SA041341S00014469OH
SA041342S00014470OH
SA041343S00014471OH
SA041344S00014458OL
SA041345S00014457OL
SA041346S00014456OL
SA041347S00014450OL
SA041348S00014449OL
SA041349S00014451OL
SA041350S00014448OL
SA041351S00014452OL
SA041352S00014455OL
SA041353S00014453OL
SA041367S00014427plus
SA041368S00014446plus
SA041369S00014426plus
SA041370S00014447plus
SA041371S00014425plus
SA041372S00014445plus
SA041373S00014444plus
SA041374S00014424plus
SA041375S00014436plus
SA041376S00014437plus
SA041377S00014438plus
SA041378S00014439plus
SA041354S00020131Pooled serum
Showing results 1 to 65 of 65

Collection:

Collection ID:CO000763
Collection Summary:-
Sample Type:Blood

Treatment:

Treatment ID:TR000783
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000776
Sampleprep Summary:-
Sampleprep Protocol Filename:A003_-_Untargeted_Metabolomics.pdf

Combined analysis:

Analysis ID AN001169 AN001170
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Agilent Agilent
Column Waters Acquity HSS T3 (50 x 2.1mm,1.8um) Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
MS Type ESI ESI
MS instrument type QTOF QTOF
MS instrument name Agilent 6530 QTOF Agilent 6530 QTOF
Ion Mode NEGATIVE POSITIVE
Units peak area peak area

Chromatography:

Chromatography ID:CH000822
Instrument Name:Agilent
Column Name:Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
Chromatography Type:Reversed phase

MS:

MS ID:MS001064
Analysis ID:AN001169
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:NEGATIVE
Analysis Protocol File:A003_-_Untargeted_Metabolomics.pdf
  
MS ID:MS001065
Analysis ID:AN001170
Instrument Name:Agilent 6530 QTOF
Instrument Type:QTOF
MS Type:ESI
Ion Mode:POSITIVE
Analysis Protocol File:A003_-_Untargeted_Metabolomics.pdf
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