Summary of Study ST001063

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench,, where it has been assigned Project ID PR000713. The data can be accessed directly via it's Project DOI: 10.21228/M8HM48 This work is supported by NIH grant, U2C- DK119886.


This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST001063
Study TitleLipidomics analysis for aged mice epididymal adipose tissue (part-I)
Study TypeMS lipidomics analysis
Study SummaryLipidomics studies on samples from aged and young mice.
Takeda Pharmaceutical Company Limited
Last NameAndo
First NameAyumi
Address26-1, Muraoka-Higashi 2-chome, Fujisawa-shi, Kanagawa 251-8555, Japan
Submit Date2018-09-18
Raw Data AvailableYes
Raw Data File Type(s)gda
Analysis Type DetailLC-MS
Release Date2019-10-11
Release Version1
Ayumi Ando Ayumi Ando application/zip

Select appropriate tab below to view additional metadata details:


Project ID:PR000713
Project DOI:doi: 10.21228/M8HM48
Project Title:Lipidomics analysis for aged mice organs
Project Type:MS lipidomics analysis
Project Summary:Lipidomics analysis for aged mice organs
Institute:Takeda Pharmaceutical Company Limited
Last Name:Ando
First Name:Ayumi
Address:26-1, Muraoka-Higashi 2-chome, Fujisawa-shi, Kanagawa, 251-8555, Japan


Subject ID:SU001107
Subject Type:Mammal
Subject Species:Mus musculus
Taxonomy ID:10090
Genotype Strain:C57BL/6J mice
Age Or Age Range:8 week (“young”) and 112 week (“old”).
Weight Or Weight Range:young: 20.2g (mean), aged: 34.3g (mean)
Animal Animal Supplier:CLEA (Tokyo, Japan)
Animal Light Cycle:a 12-hour light/12-hour dark schedule
Animal Feed:CE-2, CLEA
Animal Water:tap water


Subject type: Mammal; Subject species: Mus musculus (Factor headings shown in green)

mb_sample_id local_sample_id Age Tissue
SA071883Cortex_60_agedAged 112 weeks Cerebral Cortex
SA071884Cortex_58_agedAged 112 weeks Cerebral Cortex
SA071885Cortex_56_agedAged 112 weeks Cerebral Cortex
SA071886Cortex_54_agedAged 112 weeks Cerebral Cortex
SA071887Cortex_52_agedAged 112 weeks Cerebral Cortex
SA071888Adipose_60_agedAged 112 weeks Epididymal adipose tissue
SA071889Adipose_58_agedAged 112 weeks Epididymal adipose tissue
SA071890Adipose_52_agedAged 112 weeks Epididymal adipose tissue
SA071891Adipose_54_agedAged 112 weeks Epididymal adipose tissue
SA071892Adipose_56_agedAged 112 weeks Epididymal adipose tissue
SA071893Femoral_52_agedAged 112 weeks Femoral muscle
SA071894Femoral_58_agedAged 112 weeks Femoral muscle
SA071895Femoral_60_agedAged 112 weeks Femoral muscle
SA071896Femoral_56_agedAged 112 weeks Femoral muscle
SA071897Femoral_54_agedAged 112 weeks Femoral muscle
SA071898Liver_60_agedAged 112 weeks Liver
SA071899Liver_58_agedAged 112 weeks Liver
SA071900Liver_56_agedAged 112 weeks Liver
SA071901Liver_52_agedAged 112 weeks Liver
SA071902Liver_54_agedAged 112 weeks Liver
SA071903Cortex_59_youngYoung 8 weeks Cerebral Cortex
SA071904Cortex_57_youngYoung 8 weeks Cerebral Cortex
SA071905Cortex_51_youngYoung 8 weeks Cerebral Cortex
SA071906Cortex_55_youngYoung 8 weeks Cerebral Cortex
SA071907Cortex_53_youngYoung 8 weeks Cerebral Cortex
SA071908Adipose_59_youngYoung 8 weeks Epididymal adipose tissue
SA071909Adipose_57_youngYoung 8 weeks Epididymal adipose tissue
SA071910Adipose_55_youngYoung 8 weeks Epididymal adipose tissue
SA071911Adipose_51_youngYoung 8 weeks Epididymal adipose tissue
SA071912Adipose_53_youngYoung 8 weeks Epididymal adipose tissue
SA071913Femoral_57_youngYoung 8 weeks Femoral muscle
SA071914Femoral_59_youngYoung 8 weeks Femoral muscle
SA071915Femoral_55_youngYoung 8 weeks Femoral muscle
SA071916Femoral_53_youngYoung 8 weeks Femoral muscle
SA071917Femoral_51_youngYoung 8 weeks Femoral muscle
SA071918Liver_59_youngYoung 8 weeks Liver
SA071919Liver_57_youngYoung 8 weeks Liver
SA071920Liver_55_youngYoung 8 weeks Liver
SA071921Liver_53_youngYoung 8 weeks Liver
SA071922Liver_51_youngYoung 8 weeks Liver
Showing results 1 to 40 of 40


Collection ID:CO001101
Collection Summary:All mice were killed by decapitation for sample collection. Collected tissues were immediately frozen by liquid nitrogen then stored -80 C until use. (Femoral, Cortex, Liver, Adipose) tissues.
Sample Type:Adipose tissue
Storage Conditions:-80℃


Treatment ID:TR001121
Treatment Summary:Tissues were homogenised in isopropanol (100 mg/mL) for lipidomics.

Sample Preparation:

Sampleprep ID:SP001114
Sampleprep Summary:Tissues were homogenised in isopropanol (100 mg/mL) for lipidomics.

Combined analysis:

Analysis ID AN001739 AN001740
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Orbitrap XL Orbitrap XL
Column Waters XBridge C18 (50 x 2.1mm,3um) Waters XBridge C18 (50 x 2.1mm,3um)
MS instrument type Single quadrupole Single quadrupole
MS instrument name Thermo LTQ XL Thermo LTQ XL
Units peak area peak area


Chromatography ID:CH001230
Chromatography Summary:The liquid chromatography/mass spectrometry system consisted of an Ultimate3000 RSLC system (Thermo Fisher Scientific inc., Sunnyvale, CA, USA) using a gradient elution consisting of mobile phase A (0.01% acetic acid and 1 mM ammonia in MilliQ water) and mobile phase B (0.001% acetic acid and 0.2 mM ammonia in ethanol/isopropanol [3:1])
Instrument Name:Orbitrap XL
Column Name:Waters XBridge C18 (50 x 2.1mm,3um)
Solvent A:100% water; 0.01% acetic acid; 1 mM ammonia
Solvent B:75% ethanol/25% isopropanol; 0.001% acetic acid; 0.2 mM ammonia
Chromatography Type:Reversed phase


MS ID:MS001608
Analysis ID:AN001739
Instrument Name:Thermo LTQ XL
Instrument Type:Single quadrupole
MS ID:MS001609
Analysis ID:AN001740
Instrument Name:Thermo LTQ XL
Instrument Type:Single quadrupole