Metabolomics Structure Database

 
MW REGNO: 37255
Common Name:5-Hydroxylysine
Systematic Name:(2S,5R)-2,6-diamino-5-hydroxyhexanoic acid
RefMet Name:5-Hydroxylysine
Synonyms: [PubChem Synonyms]
Exact Mass:
162.1004 (neutral)    Calculate m/z:
Formula:C6H14N2O3
InChIKey:YSMODUONRAFBET-UHNVWZDZSA-N
ClassyFire superclass:Organic acids and derivatives [C0000264]
ClassyFire class:Carboxylic acids and derivatives [C0000265]
ClassyFire subclass:Amino acids, peptides, and analogues [C0000013]
ClassyFire direct parent:Alpha amino acids [C0002404]
MoNA MS spectra:View MS spectra
NP-MRD NMR spectra:View NMR spectra
SMILES:C(C[C@@H](C(=O)O)N)[C@H](CN)O
Studies:Available studies (via RefMet name)

Select appropriate tab below to view additional details:

External database links:

PubChem CID:3032849
CHEBI ID:18040
HMDB ID:HMDB0000450
KEGG ID:C16741
Chemspider ID:2297721
METLIN ID:5439
NP-MRD ID(NMR):NP0001396
Plant Metabolite Hub(Pmhub):MS000000229

Calculated physicochemical properties (?):

Heavy Atoms: 11  
Rings: 0  
Aromatic Rings: 0  
Rotatable Bonds: 5  
van der Waals Molecular volume: 158.09 Å3 molecule-1  
Toplogical Polar Sufrace Area: 109.57 Å2 molecule-1  
Hydrogen Bond Donors: 4  
Hydrogen Bond Acceptors: 3  
logP: -0.64  
Molar Refractivity: 41.42  
Fraction sp3 Carbons: 0.83  
sp3 Carbons: 5  

References

LIPID MAPS classification: "Update of the LIPID MAPS comprehensive classification system for lipids", Fahy E, Subramaniam S, Murphy RC, Nishijima M, Raetz CR, Shimizu T, Spener F, van Meer G, Wakelam MJ, and Dennis EA, J. Lipid Res. (2009) 50: S9-S14. DOI: 10.1194/jlr.R800095-JLR200
ClassyFire classification: "ClassyFire: automated chemical classification with a comprehensive, computable taxonomy", Djoumbou Feunang Y, Eisner R, Knox C, Chepelev L, Hastings J, Owen G, Fahy E, Steinbeck C, Subramanian S, Bolton E, Greiner R, and Wishart DS, J. Cheminformatics (2016) 8:61. DOI: 10.1186/s13321-016-0174-y

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