Metabolomics Workbench : NIH Data Repository

Clustering data with hclust algorithm for (Study ST003979)

(Analysis AN006554)

Metabolite	Structure	F1	F2	F3
2-Hydroxyglutarate	ME1050321	0.63	0.53	1.84
S7P	ME1050328	0.87	0.35	1.78
Adenylosuccinate	ME1050391	1.00	0.39	1.20
3-Hydroxybutyrate	ME1050331	1.23	0.48	1.24
Malate	ME1050324	1.07	0.59	1.34
Fumarate	ME1050323	1.14	0.53	1.33
G6P	ME1050304	1.15	0.55	1.30
2,3-DPG	ME1050310	1.45	0.91	0.55
Pantothenate	ME1050369	1.29	1.13	0.58
4-Methyl-2-oxopentanoate	ME1050337	1.43	0.62	0.95
NADH	ME1050405	1.36	0.62	1.02
CoA	ME1050381	1.28	0.72	0.86
2PG	ME1050312	1.28	0.70	1.02
3PG	ME1050311	1.30	0.76	0.94
N-Acetyl-beta-alanine	ME1050339	1.34	0.73	0.94
PEP	ME1050313	1.35	0.69	0.96
6-Phosphogluconate	ME1050325	1.70	0.45	0.86
Citramalate	ME1050346	1.58	0.53	0.89
Pyruvate	ME1050314	1.54	0.53	0.93
PRPP	ME1050382	1.53	0.55	0.66
N-Acetylmethionine	ME1050361	1.36	0.66	0.78
Isobutyryl CoA	ME1050385	1.57	0.67	0.76
Lactate	ME1050315	1.55	0.63	0.81
2-Oxoisopentanoate	ME1050333	1.49	0.63	0.88
Acetyl CoA	ME1050316	1.47	0.71	0.83
Threonate	ME1050341	1.51	0.67	0.82
G3P	ME1050309	0.69	1.77	1.01
O-Phosphoserine	ME1050358	0.66	1.32	1.02
XMP	ME1050379	0.71	1.52	0.96
Adenosine 3^,5^-diphosphate	ME1050388	0.65	1.08	1.34
Phenaceturate	ME1050362	0.99	0.82	1.29
F1,6P	ME1050306	0.91	0.84	1.25
G1P	ME1050303	0.94	0.80	1.26
Adipate	ME1050345	0.76	0.99	1.26
AMP	ME1050376	0.84	0.92	1.24
N-Acetylphenylalanine	ME1050367	0.83	0.94	1.23
2-Oxoglutarate	ME1050320	0.73	0.64	1.63
Isocitrate	ME1050319	0.80	0.66	1.54
cis-Aconitate	ME1050318	0.82	0.76	1.42
Citrate	ME1050317	0.86	0.72	1.41
Succinate	ME1050322	0.64	0.82	1.54
Dodecanoate	ME1050365	0.68	0.95	1.37
CDP-choline	ME1050398	0.73	0.85	1.41
IMP	ME1050377	0.74	0.84	1.42
CMP-N-acetylneuraminate	ME1050403	1.06	0.96	0.98
Gluconate	ME1050364	1.11	0.93	0.97
UDP-glucose	ME1050399	1.10	0.93	0.96
Phthalate	ME1050352	1.12	0.91	0.98
Ru5P	ME1050326	1.12	0.91	0.96
NADP+	ME1050406	1.13	1.02	0.86
FAD	ME1050407	1.13	0.95	0.89
Isethionate	ME1050335	1.10	0.97	0.92
Pimelate	ME1050349	1.30	0.91	0.97
N-Acetylglucosamine 1-phosphate	ME1050371	1.24	0.86	0.89
UDP-N-acetylglucosamine	ME1050402	1.18	0.89	0.93
GDP-mannose	ME1050401	1.18	0.86	0.96
NAD+	ME1050404	1.19	0.85	0.97
F6P	ME1050305	1.11	0.72	1.16
3-Hydroxy-3-methylglutarate	ME1050350	1.09	0.85	1.06
5-Oxoproline	ME1050336	1.21	0.77	1.03
Urate	ME1050353	1.14	0.76	1.05
GDP	ME1050390	0.69	1.24	1.07
Glycolate	ME1050329	0.75	1.21	1.04
Pelargonate	ME1050348	0.74	1.18	1.08
4-Acetylbutyrate	ME1050338	0.76	1.16	1.08
Ethanolamine phosphate	ME1050343	0.76	1.17	1.08
Sebacate	ME1050366	0.73	1.14	1.13
4-Oxopentanoate	ME1050334	0.73	1.09	1.18
Decanoate	ME1050354	0.74	1.08	1.18
Azelate	ME1050359	0.84	1.04	1.13
Octanoate	ME1050344	0.81	1.11	1.08
3-Phenylpropionate	ME1050347	0.80	1.10	1.10
Terephthalate	ME1050351	0.79	1.10	1.11
Malonate	ME1050330	0.92	0.95	1.13
CMP	ME1050374	0.98	0.94	1.09
UMP	ME1050375	0.96	0.98	1.06
GMP	ME1050378	0.99	0.98	1.03
NADPH	ME1050380	0.99	0.97	1.03
Glutarate	ME1050340	1.00	0.95	1.05
UDP-glucuronate	ME1050400	1.02	0.95	1.03
CDP	ME1050383	0.96	1.07	0.97
Glucuronate	ME1050363	0.96	1.06	0.97
UDP	ME1050384	0.99	1.07	0.94
UTP	ME1050395	1.00	1.09	0.92
CTP	ME1050394	0.95	1.12	0.93
N-Acetylleucine	ME1050355	0.98	1.11	0.94
ATP	ME1050396	0.97	1.10	0.93
GTP	ME1050397	0.98	1.10	0.92
N-Acetylglutamate	ME1050360	1.06	1.03	0.91
DHAP	ME1050307	1.03	1.07	0.90
N-Acetylglucosamine 6-phosphate	ME1050372	1.04	1.10	0.86
N-Acetylneuraminate	ME1050373	0.92	1.03	1.05
R5P	ME1050327	0.86	1.06	1.04
ADP	ME1050389	0.89	1.08	1.03
dCTP	ME1050392	0.88	1.09	1.03
Glycerate	ME1050332	0.90	1.08	1.02
N-Acetylaspartate	ME1050356	0.91	1.07	1.01
Dodecanedioate	ME1050370	0.88	1.14	0.98
dTTP	ME1050393	0.83	1.21	0.96
Carbamoylaspartate	ME1050357	1.26	0.68	NA
Phosphonoacetate	ME1050342	0.96	1.15	NA
Saccharate	ME1050368	1.37	NA	0.44
Glycerophosphate	ME1050308	1.90	0.43	0.67
Malonyl CoA	ME1050386	2.03	0.45	0.52

Factors:

F1	Sample source:3T3-L1 \| Treatment:si-Ctr
F2	Sample source:3T3-L1 \| Treatment:si-Idh3b
F3	Sample source:3T3-L1 \| Treatment:si-Idh3b, dm-α-KG

Data matrix