Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST003735)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Treatment:0MIC CZA - 4MIC TGC \| Timepoint:0h \| Sample source:E coli bacteria cell pellet
F2	Treatment:0MIC CZA - 4MIC TGC \| Timepoint:0h \| Sample source:E coli bacteria medium supernatant
F3	Treatment:0MIC CZA - 4MIC TGC \| Timepoint:2h \| Sample source:E coli bacteria cell pellet
F4	Treatment:0MIC CZA - 4MIC TGC \| Timepoint:2h \| Sample source:E coli bacteria medium supernatant
F5	Treatment:0MIC CZA - 4MIC TGC \| Timepoint:4h \| Sample source:E coli bacteria cell pellet
F6	Treatment:0MIC CZA - 4MIC TGC \| Timepoint:4h \| Sample source:E coli bacteria medium supernatant
F7	Treatment:4MIC CZA - 0MIC TGC \| Timepoint:0h \| Sample source:E coli bacteria cell pellet
F8	Treatment:4MIC CZA - 0MIC TGC \| Timepoint:0h \| Sample source:E coli bacteria medium supernatant
F9	Treatment:4MIC CZA - 0MIC TGC \| Timepoint:2h \| Sample source:E coli bacteria cell pellet
F10	Treatment:4MIC CZA - 0MIC TGC \| Timepoint:2h \| Sample source:E coli bacteria medium supernatant
F11	Treatment:4MIC CZA - 0MIC TGC \| Timepoint:4h \| Sample source:E coli bacteria cell pellet
F12	Treatment:4MIC CZA - 0MIC TGC \| Timepoint:4h \| Sample source:E coli bacteria medium supernatant
F13	Treatment:4MIC CZA - 4MIC TGC \| Timepoint:0h \| Sample source:E coli bacteria cell pellet
F14	Treatment:4MIC CZA - 4MIC TGC \| Timepoint:0h \| Sample source:E coli bacteria medium supernatant
F15	Treatment:4MIC CZA - 4MIC TGC \| Timepoint:2h \| Sample source:E coli bacteria cell pellet
F16	Treatment:4MIC CZA - 4MIC TGC \| Timepoint:2h \| Sample source:E coli bacteria medium supernatant
F17	Treatment:4MIC CZA - 4MIC TGC \| Timepoint:4h \| Sample source:E coli bacteria cell pellet
F18	Treatment:4MIC CZA - 4MIC TGC \| Timepoint:4h \| Sample source:E coli bacteria medium supernatant
F19	Treatment:Blank \| Timepoint:Blank \| Sample source:Blank
F20	Treatment:Control \| Timepoint:0h \| Sample source:E coli bacteria cell pellet
F21	Treatment:Control \| Timepoint:0h \| Sample source:E coli bacteria medium supernatant
F22	Treatment:Control \| Timepoint:2h \| Sample source:E coli bacteria cell pellet
F23	Treatment:Control \| Timepoint:2h \| Sample source:E coli bacteria medium supernatant
F24	Treatment:Control \| Timepoint:4h \| Sample source:E coli bacteria cell pellet
F25	Treatment:Control \| Timepoint:4h \| Sample source:E coli bacteria medium supernatant
F26	Treatment:QC \| Timepoint:QC \| Sample source:E coli bacteria cell pellet QC
F27	Treatment:QC \| Timepoint:QC \| Sample source:E coli bacteria medium supernatant QC

Data matrix