Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST003786)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Sample source:Human stool ex vivo culture \| Stool Donor:288 \| QCRole:Sample \| Replicate:1 \| Time_point:0h \| Treatment:-
F2	Sample source:Human stool ex vivo culture \| Stool Donor:288 \| QCRole:Sample \| Replicate:1 \| Time_point:0h \| Treatment:Maslinic acid
F3	Sample source:Human stool ex vivo culture \| Stool Donor:288 \| QCRole:Sample \| Replicate:1 \| Time_point:48h \| Treatment:-
F4	Sample source:Human stool ex vivo culture \| Stool Donor:288 \| QCRole:Sample \| Replicate:1 \| Time_point:48h \| Treatment:Maslinic acid
F5	Sample source:Human stool ex vivo culture \| Stool Donor:288 \| QCRole:Sample \| Replicate:2 \| Time_point:0h \| Treatment:-
F6	Sample source:Human stool ex vivo culture \| Stool Donor:288 \| QCRole:Sample \| Replicate:2 \| Time_point:0h \| Treatment:Maslinic acid
F7	Sample source:Human stool ex vivo culture \| Stool Donor:288 \| QCRole:Sample \| Replicate:2 \| Time_point:48h \| Treatment:-
F8	Sample source:Human stool ex vivo culture \| Stool Donor:288 \| QCRole:Sample \| Replicate:2 \| Time_point:48h \| Treatment:Maslinic acid
F9	Sample source:Human stool ex vivo culture \| Stool Donor:288 \| QCRole:Sample \| Replicate:3 \| Time_point:0h \| Treatment:-
F10	Sample source:Human stool ex vivo culture \| Stool Donor:288 \| QCRole:Sample \| Replicate:3 \| Time_point:0h \| Treatment:Maslinic acid
F11	Sample source:Human stool ex vivo culture \| Stool Donor:288 \| QCRole:Sample \| Replicate:3 \| Time_point:48h \| Treatment:-
F12	Sample source:Human stool ex vivo culture \| Stool Donor:288 \| QCRole:Sample \| Replicate:3 \| Time_point:48h \| Treatment:Maslinic acid
F13	Sample source:Human stool ex vivo culture \| Stool Donor:489 \| QCRole:Sample \| Replicate:1 \| Time_point:0h \| Treatment:-
F14	Sample source:Human stool ex vivo culture \| Stool Donor:489 \| QCRole:Sample \| Replicate:1 \| Time_point:0h \| Treatment:Maslinic acid
F15	Sample source:Human stool ex vivo culture \| Stool Donor:489 \| QCRole:Sample \| Replicate:1 \| Time_point:48h \| Treatment:-
F16	Sample source:Human stool ex vivo culture \| Stool Donor:489 \| QCRole:Sample \| Replicate:1 \| Time_point:48h \| Treatment:Maslinic acid
F17	Sample source:Human stool ex vivo culture \| Stool Donor:489 \| QCRole:Sample \| Replicate:2 \| Time_point:0h \| Treatment:-
F18	Sample source:Human stool ex vivo culture \| Stool Donor:489 \| QCRole:Sample \| Replicate:2 \| Time_point:0h \| Treatment:Maslinic acid
F19	Sample source:Human stool ex vivo culture \| Stool Donor:489 \| QCRole:Sample \| Replicate:2 \| Time_point:48h \| Treatment:-
F20	Sample source:Human stool ex vivo culture \| Stool Donor:489 \| QCRole:Sample \| Replicate:2 \| Time_point:48h \| Treatment:Maslinic acid
F21	Sample source:Human stool ex vivo culture \| Stool Donor:489 \| QCRole:Sample \| Replicate:3 \| Time_point:0h \| Treatment:-
F22	Sample source:Human stool ex vivo culture \| Stool Donor:489 \| QCRole:Sample \| Replicate:3 \| Time_point:0h \| Treatment:Maslinic acid
F23	Sample source:Human stool ex vivo culture \| Stool Donor:489 \| QCRole:Sample \| Replicate:3 \| Time_point:48h \| Treatment:-
F24	Sample source:Human stool ex vivo culture \| Stool Donor:489 \| QCRole:Sample \| Replicate:3 \| Time_point:48h \| Treatment:Maslinic acid
F25	Sample source:Human stool ex vivo culture \| Stool Donor:619 \| QCRole:Sample \| Replicate:1 \| Time_point:0h \| Treatment:-
F26	Sample source:Human stool ex vivo culture \| Stool Donor:619 \| QCRole:Sample \| Replicate:1 \| Time_point:0h \| Treatment:Maslinic acid
F27	Sample source:Human stool ex vivo culture \| Stool Donor:619 \| QCRole:Sample \| Replicate:1 \| Time_point:48h \| Treatment:-
F28	Sample source:Human stool ex vivo culture \| Stool Donor:619 \| QCRole:Sample \| Replicate:1 \| Time_point:48h \| Treatment:Maslinic acid
F29	Sample source:Human stool ex vivo culture \| Stool Donor:619 \| QCRole:Sample \| Replicate:2 \| Time_point:0h \| Treatment:-
F30	Sample source:Human stool ex vivo culture \| Stool Donor:619 \| QCRole:Sample \| Replicate:2 \| Time_point:0h \| Treatment:Maslinic acid
F31	Sample source:Human stool ex vivo culture \| Stool Donor:619 \| QCRole:Sample \| Replicate:2 \| Time_point:48h \| Treatment:-
F32	Sample source:Human stool ex vivo culture \| Stool Donor:619 \| QCRole:Sample \| Replicate:2 \| Time_point:48h \| Treatment:Maslinic acid
F33	Sample source:Human stool ex vivo culture \| Stool Donor:619 \| QCRole:Sample \| Replicate:3 \| Time_point:0h \| Treatment:-
F34	Sample source:Human stool ex vivo culture \| Stool Donor:619 \| QCRole:Sample \| Replicate:3 \| Time_point:0h \| Treatment:Maslinic acid
F35	Sample source:Human stool ex vivo culture \| Stool Donor:619 \| QCRole:Sample \| Replicate:3 \| Time_point:48h \| Treatment:-
F36	Sample source:Human stool ex vivo culture \| Stool Donor:619 \| QCRole:Sample \| Replicate:3 \| Time_point:48h \| Treatment:Maslinic acid
F37	Sample source:Human stool ex vivo culture \| Stool Donor:745 \| QCRole:Sample \| Replicate:1 \| Time_point:0h \| Treatment:-
F38	Sample source:Human stool ex vivo culture \| Stool Donor:745 \| QCRole:Sample \| Replicate:1 \| Time_point:0h \| Treatment:Maslinic acid
F39	Sample source:Human stool ex vivo culture \| Stool Donor:745 \| QCRole:Sample \| Replicate:1 \| Time_point:48h \| Treatment:-
F40	Sample source:Human stool ex vivo culture \| Stool Donor:745 \| QCRole:Sample \| Replicate:1 \| Time_point:48h \| Treatment:Maslinic acid
F41	Sample source:Human stool ex vivo culture \| Stool Donor:745 \| QCRole:Sample \| Replicate:2 \| Time_point:0h \| Treatment:-
F42	Sample source:Human stool ex vivo culture \| Stool Donor:745 \| QCRole:Sample \| Replicate:2 \| Time_point:0h \| Treatment:Maslinic acid
F43	Sample source:Human stool ex vivo culture \| Stool Donor:745 \| QCRole:Sample \| Replicate:2 \| Time_point:48h \| Treatment:-
F44	Sample source:Human stool ex vivo culture \| Stool Donor:745 \| QCRole:Sample \| Replicate:2 \| Time_point:48h \| Treatment:Maslinic acid
F45	Sample source:Human stool ex vivo culture \| Stool Donor:745 \| QCRole:Sample \| Replicate:3 \| Time_point:0h \| Treatment:-
F46	Sample source:Human stool ex vivo culture \| Stool Donor:745 \| QCRole:Sample \| Replicate:3 \| Time_point:0h \| Treatment:Maslinic acid
F47	Sample source:Human stool ex vivo culture \| Stool Donor:745 \| QCRole:Sample \| Replicate:3 \| Time_point:48h \| Treatment:-
F48	Sample source:Human stool ex vivo culture \| Stool Donor:745 \| QCRole:Sample \| Replicate:3 \| Time_point:48h \| Treatment:Maslinic acid
F49	Sample source:Media used for stool cultures \| Stool Donor:None \| QCRole:Sample \| Replicate:1 \| Time_point:0h \| Treatment:-
F50	Sample source:Media used for stool cultures \| Stool Donor:None \| QCRole:Sample \| Replicate:1 \| Time_point:0h \| Treatment:Maslinic acid
F51	Sample source:Media used for stool cultures \| Stool Donor:None \| QCRole:Sample \| Replicate:1 \| Time_point:48h \| Treatment:-
F52	Sample source:Media used for stool cultures \| Stool Donor:None \| QCRole:Sample \| Replicate:1 \| Time_point:48h \| Treatment:Maslinic acid
F53	Sample source:Media used for stool cultures \| Stool Donor:None \| QCRole:Sample \| Replicate:2 \| Time_point:0h \| Treatment:-
F54	Sample source:Media used for stool cultures \| Stool Donor:None \| QCRole:Sample \| Replicate:2 \| Time_point:0h \| Treatment:Maslinic acid
F55	Sample source:Media used for stool cultures \| Stool Donor:None \| QCRole:Sample \| Replicate:2 \| Time_point:48h \| Treatment:-
F56	Sample source:Media used for stool cultures \| Stool Donor:None \| QCRole:Sample \| Replicate:2 \| Time_point:48h \| Treatment:Maslinic acid
F57	Sample source:Media used for stool cultures \| Stool Donor:None \| QCRole:Sample \| Replicate:3 \| Time_point:0h \| Treatment:-
F58	Sample source:Media used for stool cultures \| Stool Donor:None \| QCRole:Sample \| Replicate:3 \| Time_point:0h \| Treatment:Maslinic acid
F59	Sample source:Media used for stool cultures \| Stool Donor:None \| QCRole:Sample \| Replicate:3 \| Time_point:48h \| Treatment:-
F60	Sample source:Media used for stool cultures \| Stool Donor:None \| QCRole:Sample \| Replicate:3 \| Time_point:48h \| Treatment:Maslinic acid
F61	Sample source:Quality control pool \| Stool Donor:- \| QCRole:QC-drift_correction \| Replicate:PREFA01 \| Time_point:PREFA01 \| Treatment:-
F62	Sample source:Quality control pool \| Stool Donor:- \| QCRole:QC-drift_correction \| Replicate:PREFA02 \| Time_point:PREFA02 \| Treatment:-
F63	Sample source:Quality control pool \| Stool Donor:- \| QCRole:QC-drift_correction \| Replicate:PREFA03 \| Time_point:PREFA03 \| Treatment:-
F64	Sample source:Quality control pool \| Stool Donor:- \| QCRole:QC-drift_correction \| Replicate:PREFA04 \| Time_point:PREFA04 \| Treatment:-
F65	Sample source:Quality control pool \| Stool Donor:- \| QCRole:QC-pooled_ref \| Replicate:PREFB01 \| Time_point:PREFB01 \| Treatment:-
F66	Sample source:Quality control pool \| Stool Donor:- \| QCRole:QC-pooled_ref \| Replicate:PREFB02 \| Time_point:PREFB02 \| Treatment:-
F67	Sample source:Quality control pool \| Stool Donor:- \| QCRole:QC-pooled_ref \| Replicate:PREFB03 \| Time_point:PREFB03 \| Treatment:-
F68	Sample source:Quality control pool \| Stool Donor:- \| QCRole:QC-pooled_ref \| Replicate:PREFB04 \| Time_point:PREFB04 \| Treatment:-
F69	Sample source:Titration of Quality control pool \| Stool Donor:- \| QCRole:Titration \| Replicate:Titration-100 \| Time_point:Titration-100 \| Treatment:-
F70	Sample source:Titration of Quality control pool \| Stool Donor:- \| QCRole:Titration \| Replicate:Titration-10 \| Time_point:Titration-10 \| Treatment:-
F71	Sample source:Titration of Quality control pool \| Stool Donor:- \| QCRole:Titration \| Replicate:Titration-20 \| Time_point:Titration-20 \| Treatment:-
F72	Sample source:Titration of Quality control pool \| Stool Donor:- \| QCRole:Titration \| Replicate:Titration-40 \| Time_point:Titration-40 \| Treatment:-
F73	Sample source:Titration of Quality control pool \| Stool Donor:- \| QCRole:Titration \| Replicate:Titration-60 \| Time_point:Titration-60 \| Treatment:-
F74	Sample source:Titration of Quality control pool \| Stool Donor:- \| QCRole:Titration \| Replicate:Titration-80 \| Time_point:Titration-80 \| Treatment:-

Data matrix