Metabolomics Workbench : NIH Data Repository

Clustering data with heatmap algorithm for (Study ST003910)

This analysis uses the 'heatmap.2' function of gplots package in the R statistics environment

The rows are scaled to have mean=0 and standard deviation=1

Factors:

F1	Species:Bifidobacterium longum \| Media:CHG \| Replicate:R1 \| Time:0
F2	Species:Bifidobacterium longum \| Media:CHG \| Replicate:R1 \| Time:24
F3	Species:Bifidobacterium longum \| Media:CHG \| Replicate:R1 \| Time:48
F4	Species:Bifidobacterium longum \| Media:CHG \| Replicate:R1 \| Time:6
F5	Species:Bifidobacterium longum \| Media:CHG \| Replicate:R2 \| Time:0
F6	Species:Bifidobacterium longum \| Media:CHG \| Replicate:R2 \| Time:24
F7	Species:Bifidobacterium longum \| Media:CHG \| Replicate:R2 \| Time:48
F8	Species:Bifidobacterium longum \| Media:CHG \| Replicate:R2 \| Time:6
F9	Species:Bifidobacterium longum \| Media:CHG \| Replicate:R3 \| Time:0
F10	Species:Bifidobacterium longum \| Media:CHG \| Replicate:R3 \| Time:24
F11	Species:Bifidobacterium longum \| Media:CHG \| Replicate:R3 \| Time:48
F12	Species:Bifidobacterium longum \| Media:CHG \| Replicate:R3 \| Time:6
F13	Species:Bifidobacterium longum \| Media:Gifu \| Replicate:R1 \| Time:0
F14	Species:Bifidobacterium longum \| Media:Gifu \| Replicate:R1 \| Time:24
F15	Species:Bifidobacterium longum \| Media:Gifu \| Replicate:R1 \| Time:48
F16	Species:Bifidobacterium longum \| Media:Gifu \| Replicate:R1 \| Time:6
F17	Species:Bifidobacterium longum \| Media:Gifu \| Replicate:R2 \| Time:0
F18	Species:Bifidobacterium longum \| Media:Gifu \| Replicate:R2 \| Time:24
F19	Species:Bifidobacterium longum \| Media:Gifu \| Replicate:R2 \| Time:48
F20	Species:Bifidobacterium longum \| Media:Gifu \| Replicate:R2 \| Time:6
F21	Species:Bifidobacterium longum \| Media:Gifu \| Replicate:R3 \| Time:0
F22	Species:Bifidobacterium longum \| Media:Gifu \| Replicate:R3 \| Time:24
F23	Species:Bifidobacterium longum \| Media:Gifu \| Replicate:R3 \| Time:48
F24	Species:Bifidobacterium longum \| Media:Gifu \| Replicate:R3 \| Time:6
F25	Species:Bifidobacterium longum \| Media:Mega \| Replicate:R1 \| Time:0
F26	Species:Bifidobacterium longum \| Media:Mega \| Replicate:R1 \| Time:24
F27	Species:Bifidobacterium longum \| Media:Mega \| Replicate:R1 \| Time:48
F28	Species:Bifidobacterium longum \| Media:Mega \| Replicate:R1 \| Time:6
F29	Species:Bifidobacterium longum \| Media:Mega \| Replicate:R2 \| Time:0
F30	Species:Bifidobacterium longum \| Media:Mega \| Replicate:R2 \| Time:24
F31	Species:Bifidobacterium longum \| Media:Mega \| Replicate:R2 \| Time:48
F32	Species:Bifidobacterium longum \| Media:Mega \| Replicate:R2 \| Time:6
F33	Species:Bifidobacterium longum \| Media:Mega \| Replicate:R3 \| Time:0
F34	Species:Bifidobacterium longum \| Media:Mega \| Replicate:R3 \| Time:24
F35	Species:Bifidobacterium longum \| Media:Mega \| Replicate:R3 \| Time:48
F36	Species:Bifidobacterium longum \| Media:Mega \| Replicate:R3 \| Time:6
F37	Species:Clostridium innocuum \| Media:CHG \| Replicate:R1 \| Time:0
F38	Species:Clostridium innocuum \| Media:CHG \| Replicate:R1 \| Time:24
F39	Species:Clostridium innocuum \| Media:CHG \| Replicate:R1 \| Time:48
F40	Species:Clostridium innocuum \| Media:CHG \| Replicate:R1 \| Time:6
F41	Species:Clostridium innocuum \| Media:CHG \| Replicate:R2 \| Time:0
F42	Species:Clostridium innocuum \| Media:CHG \| Replicate:R2 \| Time:24
F43	Species:Clostridium innocuum \| Media:CHG \| Replicate:R2 \| Time:48
F44	Species:Clostridium innocuum \| Media:CHG \| Replicate:R2 \| Time:6
F45	Species:Clostridium innocuum \| Media:CHG \| Replicate:R3 \| Time:0
F46	Species:Clostridium innocuum \| Media:CHG \| Replicate:R3 \| Time:24
F47	Species:Clostridium innocuum \| Media:CHG \| Replicate:R3 \| Time:48
F48	Species:Clostridium innocuum \| Media:CHG \| Replicate:R3 \| Time:6
F49	Species:Clostridium innocuum \| Media:Gifu \| Replicate:R1 \| Time:0
F50	Species:Clostridium innocuum \| Media:Gifu \| Replicate:R1 \| Time:24
F51	Species:Clostridium innocuum \| Media:Gifu \| Replicate:R1 \| Time:48
F52	Species:Clostridium innocuum \| Media:Gifu \| Replicate:R1 \| Time:6
F53	Species:Clostridium innocuum \| Media:Gifu \| Replicate:R2 \| Time:0
F54	Species:Clostridium innocuum \| Media:Gifu \| Replicate:R2 \| Time:24
F55	Species:Clostridium innocuum \| Media:Gifu \| Replicate:R2 \| Time:48
F56	Species:Clostridium innocuum \| Media:Gifu \| Replicate:R2 \| Time:6
F57	Species:Clostridium innocuum \| Media:Gifu \| Replicate:R3 \| Time:0
F58	Species:Clostridium innocuum \| Media:Gifu \| Replicate:R3 \| Time:24
F59	Species:Clostridium innocuum \| Media:Gifu \| Replicate:R3 \| Time:48
F60	Species:Clostridium innocuum \| Media:Gifu \| Replicate:R3 \| Time:6
F61	Species:Clostridium innocuum \| Media:Mega \| Replicate:R1 \| Time:0
F62	Species:Clostridium innocuum \| Media:Mega \| Replicate:R1 \| Time:24
F63	Species:Clostridium innocuum \| Media:Mega \| Replicate:R1 \| Time:48
F64	Species:Clostridium innocuum \| Media:Mega \| Replicate:R1 \| Time:6
F65	Species:Clostridium innocuum \| Media:Mega \| Replicate:R2 \| Time:0
F66	Species:Clostridium innocuum \| Media:Mega \| Replicate:R2 \| Time:24
F67	Species:Clostridium innocuum \| Media:Mega \| Replicate:R2 \| Time:48
F68	Species:Clostridium innocuum \| Media:Mega \| Replicate:R2 \| Time:6
F69	Species:Clostridium innocuum \| Media:Mega \| Replicate:R3 \| Time:0
F70	Species:Clostridium innocuum \| Media:Mega \| Replicate:R3 \| Time:24
F71	Species:Clostridium innocuum \| Media:Mega \| Replicate:R3 \| Time:48
F72	Species:Clostridium innocuum \| Media:Mega \| Replicate:R3 \| Time:6
F73	Species:Clostridium sporogenes \| Media:CHG \| Replicate:R1 \| Time:24
F74	Species:Clostridium sporogenes \| Media:CHG \| Replicate:R2 \| Time:24
F75	Species:Clostridium sporogenes \| Media:CHG \| Replicate:R3 \| Time:24
F76	Species:Escherichia coli BL21(DE3) \| Media:CHG \| Replicate:R1 \| Time:24
F77	Species:Escherichia coli BL21(DE3) \| Media:CHG \| Replicate:R2 \| Time:24
F78	Species:Escherichia coli BL21(DE3) \| Media:CHG \| Replicate:R3 \| Time:24
F79	Species:NA \| Media:Gifu \| Replicate:R1 \| Time:0
F80	Species:NA \| Media:Gifu \| Replicate:R1 \| Time:24
F81	Species:NA \| Media:Gifu \| Replicate:R1 \| Time:48
F82	Species:NA \| Media:Gifu \| Replicate:R1 \| Time:6
F83	Species:NA \| Media:Gifu \| Replicate:R2 \| Time:0
F84	Species:NA \| Media:Gifu \| Replicate:R2 \| Time:24
F85	Species:NA \| Media:Gifu \| Replicate:R2 \| Time:48
F86	Species:NA \| Media:Gifu \| Replicate:R2 \| Time:6
F87	Species:NA \| Media:Gifu \| Replicate:R3 \| Time:0
F88	Species:NA \| Media:Gifu \| Replicate:R3 \| Time:24
F89	Species:NA \| Media:Gifu \| Replicate:R3 \| Time:48
F90	Species:NA \| Media:Gifu \| Replicate:R3 \| Time:6
F91	Species:NA \| Media:Mega \| Replicate:R1 \| Time:0
F92	Species:NA \| Media:Mega \| Replicate:R1 \| Time:24
F93	Species:NA \| Media:Mega \| Replicate:R1 \| Time:48
F94	Species:NA \| Media:Mega \| Replicate:R1 \| Time:6
F95	Species:NA \| Media:Mega \| Replicate:R2 \| Time:0
F96	Species:NA \| Media:Mega \| Replicate:R2 \| Time:24
F97	Species:NA \| Media:Mega \| Replicate:R2 \| Time:48
F98	Species:NA \| Media:Mega \| Replicate:R2 \| Time:6
F99	Species:NA \| Media:Mega \| Replicate:R3 \| Time:0
F100	Species:NA \| Media:Mega \| Replicate:R3 \| Time:24
F101	Species:NA \| Media:Mega \| Replicate:R3 \| Time:48
F102	Species:NA \| Media:Mega \| Replicate:R3 \| Time:6
F103	Species:Streptococcus infantis \| Media:CHG \| Replicate:R1 \| Time:0
F104	Species:Streptococcus infantis \| Media:CHG \| Replicate:R1 \| Time:24
F105	Species:Streptococcus infantis \| Media:CHG \| Replicate:R1 \| Time:48
F106	Species:Streptococcus infantis \| Media:CHG \| Replicate:R1 \| Time:6
F107	Species:Streptococcus infantis \| Media:CHG \| Replicate:R2 \| Time:0
F108	Species:Streptococcus infantis \| Media:CHG \| Replicate:R2 \| Time:24
F109	Species:Streptococcus infantis \| Media:CHG \| Replicate:R2 \| Time:48
F110	Species:Streptococcus infantis \| Media:CHG \| Replicate:R2 \| Time:6
F111	Species:Streptococcus infantis \| Media:CHG \| Replicate:R3 \| Time:0
F112	Species:Streptococcus infantis \| Media:CHG \| Replicate:R3 \| Time:24
F113	Species:Streptococcus infantis \| Media:CHG \| Replicate:R3 \| Time:48
F114	Species:Streptococcus infantis \| Media:CHG \| Replicate:R3 \| Time:6
F115	Species:Streptococcus infantis \| Media:Gifu \| Replicate:R1 \| Time:0
F116	Species:Streptococcus infantis \| Media:Gifu \| Replicate:R1 \| Time:24
F117	Species:Streptococcus infantis \| Media:Gifu \| Replicate:R1 \| Time:48
F118	Species:Streptococcus infantis \| Media:Gifu \| Replicate:R1 \| Time:6
F119	Species:Streptococcus infantis \| Media:Gifu \| Replicate:R2 \| Time:0
F120	Species:Streptococcus infantis \| Media:Gifu \| Replicate:R2 \| Time:24
F121	Species:Streptococcus infantis \| Media:Gifu \| Replicate:R2 \| Time:48
F122	Species:Streptococcus infantis \| Media:Gifu \| Replicate:R3 \| Time:0
F123	Species:Streptococcus infantis \| Media:Gifu \| Replicate:R3 \| Time:24
F124	Species:Streptococcus infantis \| Media:Gifu \| Replicate:R3 \| Time:48
F125	Species:Streptococcus infantis \| Media:Gifu \| Replicate:R3 \| Time:6
F126	Species:Streptococcus infantis \| Media:Mega \| Replicate:R1 \| Time:0
F127	Species:Streptococcus infantis \| Media:Mega \| Replicate:R1 \| Time:24
F128	Species:Streptococcus infantis \| Media:Mega \| Replicate:R1 \| Time:48
F129	Species:Streptococcus infantis \| Media:Mega \| Replicate:R1 \| Time:6
F130	Species:Streptococcus infantis \| Media:Mega \| Replicate:R2 \| Time:0
F131	Species:Streptococcus infantis \| Media:Mega \| Replicate:R2 \| Time:24
F132	Species:Streptococcus infantis \| Media:Mega \| Replicate:R2 \| Time:48
F133	Species:Streptococcus infantis \| Media:Mega \| Replicate:R2 \| Time:6
F134	Species:Streptococcus infantis \| Media:Mega \| Replicate:R3 \| Time:0
F135	Species:Streptococcus infantis \| Media:Mega \| Replicate:R3 \| Time:24
F136	Species:Streptococcus infantis \| Media:Mega \| Replicate:R3 \| Time:48
F137	Species:Streptococcus infantis \| Media:Mega \| Replicate:R3 \| Time:6
F138	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R1 \| Time:0
F139	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R1 \| Time:24
F140	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R1 \| Time:48
F141	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R1 \| Time:6
F142	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R2 \| Time:0
F143	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R2 \| Time:24
F144	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R2 \| Time:48
F145	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R2 \| Time:6
F146	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R3 \| Time:0
F147	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R3 \| Time:24
F148	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R3 \| Time:48
F149	Species:Streptococcus parasanguinis \| Media:CHG \| Replicate:R3 \| Time:6
F150	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R1 \| Time:0
F151	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R1 \| Time:24
F152	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R1 \| Time:48
F153	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R1 \| Time:6
F154	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R2 \| Time:0
F155	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R2 \| Time:24
F156	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R2 \| Time:48
F157	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R2 \| Time:6
F158	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R3 \| Time:0
F159	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R3 \| Time:24
F160	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R3 \| Time:48
F161	Species:Streptococcus parasanguinis \| Media:Gifu \| Replicate:R3 \| Time:6
F162	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R1 \| Time:0
F163	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R1 \| Time:24
F164	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R1 \| Time:48
F165	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R1 \| Time:6
F166	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R2 \| Time:0
F167	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R2 \| Time:24
F168	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R2 \| Time:48
F169	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R2 \| Time:6
F170	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R3 \| Time:0
F171	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R3 \| Time:24
F172	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R3 \| Time:48
F173	Species:Streptococcus parasanguinis \| Media:Mega \| Replicate:R3 \| Time:6
F174	Species:Unspent media \| Media:CHG \| Replicate:R1 \| Time:0
F175	Species:Unspent media \| Media:CHG \| Replicate:R1 \| Time:24
F176	Species:Unspent media \| Media:CHG \| Replicate:R1 \| Time:48
F177	Species:Unspent media \| Media:CHG \| Replicate:R1 \| Time:6
F178	Species:Unspent media \| Media:CHG \| Replicate:R2 \| Time:0
F179	Species:Unspent media \| Media:CHG \| Replicate:R2 \| Time:24
F180	Species:Unspent media \| Media:CHG \| Replicate:R2 \| Time:48
F181	Species:Unspent media \| Media:CHG \| Replicate:R2 \| Time:6
F182	Species:Unspent media \| Media:CHG \| Replicate:R3 \| Time:0
F183	Species:Unspent media \| Media:CHG \| Replicate:R3 \| Time:24
F184	Species:Unspent media \| Media:CHG \| Replicate:R3 \| Time:48
F185	Species:Unspent media \| Media:CHG \| Replicate:R3 \| Time:6

Data matrix