Data for Comprehensive analysis of transcriptome and metabolome in Intrahepatic Cholangiocarcinoma and Hepatocellular Carcinoma (Study ST000230)

(Analysis AN000343)

Values for each metabolite have been scaled by dividing by the mean across all factors

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MetaboliteF1F2F3F4
1-Pyrroline-2-carboxylate/ (S)-1-Pyrroline-5-carboxylate/ 3,4-Dihydro-2H-Pyrrole-2-carboxylate/ Glutarimide 1.3458 1.2904 0.6952 0.6178
(1R,2S)-1-Hydroxypropane-1,2,3-tricarboxylate(0.78); 5-Dehydro-4-deoxy-D-glucarate(0.78); 2,5-Didehydro-D-gluconate(0.78); 0.9117 1.2393 1.0036 0.8151
2,3-Diphosphoglyceric acid 1.3621 0.9391 0.9816 0.6532
2,7-Anhydro-alpha-N-acetylneuraminic acid/ 2-Deoxy-2,3-dehydro-N-acetylneuraminic acid/ Sarmentosin epoxide 0.6405 1.5007 0.5981 1.2607
2-Hydroxybutyric acid 1.0130 1.2415 0.7772 0.9682
2-Hydroxyglutaric acid 1.7573 0.8686 0.6792 0.6414
2-Hydroxyvaleric acid 1.1289 0.8641 1.3761 0.7336
2-Phosphinomethylmalate 1.1113 1.0586 0.7197 1.0544
2-Phosphoglyceric acid 0.3531 0.9758 1.3029 0.9053
3-Hydroxybutyric acid 1.5158 1.3220 0.4530 0.7093
3-Phenylpropionic acid 0.8314 0.8333 1.3184 1.0169
3-Phosphoglyceric acid 0.6327 1.3900 0.9380 0.8358
3-Sulfino-L-alanine 1.4777 0.5359 1.3805 0.4089
5-Hydroxypentanoate 0.2933 0.2518 1.9074 1.0937
(5-L-Glutamyl)-L-glutamine/ N-Succinyl-L-citrulline 0.3826 1.7538 0.7945 1.0692
5-Oxoproline 1.2761 1.1698 0.7623 0.7918
6-endo-Hydroxycineole(1.76); (E)-3,7-Dimethylocta-1,6-diene-3,8-diol(1.76); Limonene-1,2-diol(1.76); (+)-Neomatatabiol(1.76); 0.1309 1.5603 0.1882 NA
6-Phosphogluconic acid 0.5767 1.6783 0.6583 1.0298
9-Oxononanoic acid NA 1.0000 NA NA
Acetyl CoA_divalent 1.3418 1.7109 0.5800 0.4812
Adenylosuccinic acid 1.1319 1.8513 0.4010 0.6158
Adipic acid 0.7640 0.6837 2.6115 0.4905
ADP 1.0751 1.6124 0.5676 0.7449
ADP-glucose/GDP-fucose 1.1548 0.9576 0.8946 0.9931
Alatolide/ Arctiopicrin 0.5018 1.6123 0.7020 0.9423
AMP 0.9726 1.3374 0.6558 1.0341
Ascorbate 2-sulfate 0.7432 1.2167 0.9464 1.0910
Ascorbic acid 0.5774 0.7241 2.1737 0.3006
ATP 1.0357 1.5693 0.5719 0.8230
cAMP 0.8609 0.9990 0.9445 1.1955
CDP-choline 1.3451 1.0573 0.8803 0.7173
cis-Aconitic acid 1.0000 NA NA NA
Citric acid 1.4984 0.8023 1.4551 0.2441
CMP 1.6257 1.1012 0.5311 0.7419
CoA_divalent 2.5599 1.1311 0.3048 0.6620
D-Alanyl-D-alanine/ N5-Methyl-L-glutamine/ N-gamma-Acetyldiaminobutyrate/ Daminozide 1.0268 0.8919 1.0564 1.0208
Decanoic acid 0.7980 1.0862 1.3711 0.8684
D-Glucosamine 6-phosphate(-1.15); 1-Amino-1-deoxy-scyllo-inositol 4-phosphate(-1.15); D-Galactosamine 1-phosphate(-1.15); 1.7967 0.9410 0.3871 0.8751
Dihydroxyacetone phosphate 0.5239 1.1923 1.4146 0.9383
D-myo-Inositol 1,2-cyclic phosphate/ 6-Deoxy-5-ketofructose 1-phosphate 0.4989 1.4645 0.6148 1.4218
D-Xylonate/ L-Arabinonate/ D-Arabinonate/ D-Ribonate/ L-Xylonate/ L-Lyxonate/ 7-Methylxanthine(8)/ 3-Methylxanthine(8)/ 1-Methylxanthine(8) 1.0237 1.5376 0.5635 0.8753
D-Xylulose 5-phosphate/alpha-D-Ribose 1-phosphate/D-Arabinose 5-phosphate 0.6691 1.1860 0.4587 1.1599
Ethanolamine phosphate 0.9357 0.7517 1.6061 0.7065
Evoxanthidine 0.3393 2.4212 0.2930 0.7186
FAD_divalent 0.7436 1.5342 0.4401 1.2821
Fructose 1,6-diphosphate 0.3409 0.7158 1.4717 NA
Fructose 6-phosphate 0.3473 1.3965 1.4261 0.8301
Fructoselysine 6-phosphate(-7) 1.2501 1.2568 0.4905 1.0027
Fumaric acid 0.5655 1.4512 0.6426 1.3407
gamma-L-Glutamyl-D-alanine 0.7506 0.9056 1.2219 1.1219
GDP 0.6274 1.3848 1.2307 0.7571
GDP-glucose/GDP-mannose/GDP-galactose 0.7420 1.2434 0.6656 1.3489
Glucaric acid 1.5925 0.7498 0.8125 0.8140
Gluconic acid 1.0959 0.8955 0.6099 1.3987
Glucose 1-phosphate 0.7703 1.1223 1.1779 0.9294
Glucose 6-phosphate 0.4296 1.5194 1.2083 0.8427
Glucuronic acid 0.8492 1.2164 0.7744 1.0472
Glyceric acid 0.9264 1.2143 0.9763 0.8830
Glycerol 3-phosphate 0.6542 1.5898 0.2986 1.4574
Glycocholic acid 1.1153 1.2131 0.5716 1.1000
Glycyl-leucine/ N6-Acetyl-L-lysine/ 6-Acetamido-3-aminohexanoate/ N2-Acetyl-L-lysine 1.1971 0.7702 1.1893 0.8050
GMP 1.4866 1.1087 0.7471 0.6577
GTP 0.6256 1.4117 1.0101 0.8902
Heptanoic acid 0.6991 1.3139 0.9918 1.1182
Hexanoic acid 0.8395 1.6639 0.7502 0.7464
Hippuric acid 1.1075 0.8710 0.5876 1.2964
Homovanillic acid 1.7494 0.9224 0.4809 0.8474
Hyoscyamine methylbromide 0.4649 1.4189 0.4969 1.6193
IMP 0.5616 1.6568 0.5611 1.2206
Inosine/ 2(alpha-D-Mannosyl)-D-glycerate 0.5176 1.4981 0.8415 1.1428
Isethionic acid 1.2434 0.7065 1.2804 0.7096
Isopimpinellin/ Glycerophosphoglycerol/ 2,3^,4,6-Tetrahydroxybenzophenone/ Pimpinellin 2.0986 0.6565 0.6085 0.6364
Isosorbide mononitrate/ O-Oxalylhomoserine/ Nitrilotriacetic acid 1.2157 1.3759 0.4508 0.9576
Lactic acid 1.2784 0.7188 1.1932 0.8096
Lauric acid 0.7953 1.1979 1.2247 0.7834
Malic acid 0.5648 1.3003 0.7887 1.3461
myo-Inositol 1-phosphate/myo-Inositol 3-phosphate 0.7312 1.5610 0.3640 1.3438
N2-(D-1-Carboxyethyl)-L-lysine 0.8066 0.7906 1.1485 1.2193
N-(6-Aminohexanoyl)-6-aminohexanoate/ Leucyl-leucine 0.5654 0.6686 1.3085 1.4574
N-Acetylaspartic acid 0.8702 0.4799 2.1411 0.5088
N-Acetylglucosamine 1-phosphate 1.1424 0.8811 1.0991 0.8774
N-Acetylglucosamine 6-phosphate 1.0891 0.9696 1.0467 0.8946
N-Acetylglutamic acid 2.0283 0.8230 0.2319 0.9168
N-Acetyl-L-citrulline 0.9142 1.0062 0.8454 1.2342
N-Acetylneuraminic acid 0.9469 1.0514 0.9097 1.0921
NAD+ 0.9521 1.4768 0.3012 1.2699
NADP+ 1.1257 1.2880 0.2890 1.1788
Octanoic acid 0.6627 1.1464 1.2702 0.9207
Orthophosphate/ Potassium acetate 0.9079 1.1531 0.9440 0.9950
Pantothenic acid 0.8925 1.0776 0.9125 1.1174
Pelargonic acid 0.6769 1.1289 1.0766 1.1175
Phosphocreatine 0.5714 1.6318 0.4842 1.3125
Phosphoenolpyruvic acid 0.3862 1.1803 1.3546 0.8611
Phthalic acid 0.3005 0.6498 0.3168 2.9954
Prostaglandin E2 NA NA 1.0000 NA
Psorospermin(0)/ S-[2-(N7-Guanyl)ethyl]-N-acetyl-L-cysteine/ Methylophiopogonone A(0) 0.6914 0.7242 0.7965 1.6347
Pterin/ 3-Hydroxy-L-glutamate/ 4-Hydroxy-L-glutamate/ L-erythro-4-Hydroxyglutamate 0.2190 NA 1.7810 NA
Pyruvic acid 0.9963 1.1026 1.0157 0.6839
Ribose 5-phosphate 0.3034 1.2606 0.9366 1.4888
Ribulose 5-phosphate 0.4714 1.5975 0.7576 1.1735
Sedoheptulose 7-phosphate 0.6174 1.9931 0.3592 1.0303
S-Glutathionyl-L-cysteine 1.6983 0.8650 0.6083 0.8285
(S)-N-Methylcanadine 0.5170 0.7614 0.7084 2.0132
Succinic acid 0.8807 1.3496 0.3892 1.3805
Taurocholic acid 2.3035 0.8881 0.3245 0.4839
Taurodeoxycholate/ Taurochenodeoxycholate/ Tauroursodeoxycholic acid 2.1548 0.9287 0.3708 0.4409
Thiomorpholine 3-carboxylate 1.0837 1.0793 0.3908 1.6545
Threonic acid 1.4472 0.9000 0.9897 0.6630
Trovafloxacin/ Daidzin/ Chrysophanol 8-O-beta-D-glucoside/ Frangulin A/ Puerarin/ Flavonol 7-O-beta-D-glucoside/ Tenitramine 0.4955 1.2008 0.7736 1.5301
UDP 0.3231 1.5809 0.7605 0.9572
UDP-glucose/UDP-galactose 0.8074 1.6933 0.3477 1.1516
UDP-glucuronic acid 1.0717 1.0606 1.2295 0.6382
UDP-N-acetylglucosamine 1.4710 1.0392 0.7881 0.7017
UMP 0.6816 1.8137 0.3733 1.1314
Uric acid 0.7085 1.2955 0.6646 1.3314
UTP 0.2635 1.9681 0.5254 1.1202
Valeric acid 0.9396 1.0112 1.1286 NA
Xanthine 0.8624 1.2301 0.8231 1.0844
Xanthosine 0.3706 1.2737 0.9840 1.3717
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Factors:

F1Tissue Type:HCC (Hepatocellular carcinoma)
F2Tissue Type:HCC-NT (surrounded non tumor of HCC)
F3Tissue Type:ICC (Intrahepatic cholangiocarcinoma)
F4Tissue Type:ICC-NT (surrounded non tumor of ICC)
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