Data for Comprehensive analysis of transcriptome and metabolome in Intrahepatic Cholangiocarcinoma and Hepatocellular Carcinoma (Study ST000230)
(Analysis AN000343)Values for each metabolite have been scaled by dividing by the mean across all factors Run Hierarchial cluster analysis on this study | Run Heatmap cluster analysis on this studyMetabolite | F1 | F2 | F3 | F4 |
---|---|---|---|---|
1-Pyrroline-2-carboxylate/ (S)-1-Pyrroline-5-carboxylate/ 3,4-Dihydro-2H-Pyrrole-2-carboxylate/ Glutarimide | 1.3458 | 1.2904 | 0.6952 | 0.6178 |
(1R,2S)-1-Hydroxypropane-1,2,3-tricarboxylate(0.78); 5-Dehydro-4-deoxy-D-glucarate(0.78); 2,5-Didehydro-D-gluconate(0.78); | 0.9117 | 1.2393 | 1.0036 | 0.8151 |
2,3-Diphosphoglyceric acid | 1.3621 | 0.9391 | 0.9816 | 0.6532 |
2,7-Anhydro-alpha-N-acetylneuraminic acid/ 2-Deoxy-2,3-dehydro-N-acetylneuraminic acid/ Sarmentosin epoxide | 0.6405 | 1.5007 | 0.5981 | 1.2607 |
2-Hydroxybutyric acid | 1.0130 | 1.2415 | 0.7772 | 0.9682 |
2-Hydroxyglutaric acid | 1.7573 | 0.8686 | 0.6792 | 0.6414 |
2-Hydroxyvaleric acid | 1.1289 | 0.8641 | 1.3761 | 0.7336 |
2-Phosphinomethylmalate | 1.1113 | 1.0586 | 0.7197 | 1.0544 |
2-Phosphoglyceric acid | 0.3531 | 0.9758 | 1.3029 | 0.9053 |
3-Hydroxybutyric acid | 1.5158 | 1.3220 | 0.4530 | 0.7093 |
3-Phenylpropionic acid | 0.8314 | 0.8333 | 1.3184 | 1.0169 |
3-Phosphoglyceric acid | 0.6327 | 1.3900 | 0.9380 | 0.8358 |
3-Sulfino-L-alanine | 1.4777 | 0.5359 | 1.3805 | 0.4089 |
5-Hydroxypentanoate | 0.2933 | 0.2518 | 1.9074 | 1.0937 |
(5-L-Glutamyl)-L-glutamine/ N-Succinyl-L-citrulline | 0.3826 | 1.7538 | 0.7945 | 1.0692 |
5-Oxoproline | 1.2761 | 1.1698 | 0.7623 | 0.7918 |
6-endo-Hydroxycineole(1.76); (E)-3,7-Dimethylocta-1,6-diene-3,8-diol(1.76); Limonene-1,2-diol(1.76); (+)-Neomatatabiol(1.76); | 0.1309 | 1.5603 | 0.1882 | NA |
6-Phosphogluconic acid | 0.5767 | 1.6783 | 0.6583 | 1.0298 |
9-Oxononanoic acid | NA | 1.0000 | NA | NA |
Acetyl CoA_divalent | 1.3418 | 1.7109 | 0.5800 | 0.4812 |
Adenylosuccinic acid | 1.1319 | 1.8513 | 0.4010 | 0.6158 |
Adipic acid | 0.7640 | 0.6837 | 2.6115 | 0.4905 |
ADP | 1.0751 | 1.6124 | 0.5676 | 0.7449 |
ADP-glucose/GDP-fucose | 1.1548 | 0.9576 | 0.8946 | 0.9931 |
Alatolide/ Arctiopicrin | 0.5018 | 1.6123 | 0.7020 | 0.9423 |
AMP | 0.9726 | 1.3374 | 0.6558 | 1.0341 |
Ascorbate 2-sulfate | 0.7432 | 1.2167 | 0.9464 | 1.0910 |
Ascorbic acid | 0.5774 | 0.7241 | 2.1737 | 0.3006 |
ATP | 1.0357 | 1.5693 | 0.5719 | 0.8230 |
cAMP | 0.8609 | 0.9990 | 0.9445 | 1.1955 |
CDP-choline | 1.3451 | 1.0573 | 0.8803 | 0.7173 |
cis-Aconitic acid | 1.0000 | NA | NA | NA |
Citric acid | 1.4984 | 0.8023 | 1.4551 | 0.2441 |
CMP | 1.6257 | 1.1012 | 0.5311 | 0.7419 |
CoA_divalent | 2.5599 | 1.1311 | 0.3048 | 0.6620 |
D-Alanyl-D-alanine/ N5-Methyl-L-glutamine/ N-gamma-Acetyldiaminobutyrate/ Daminozide | 1.0268 | 0.8919 | 1.0564 | 1.0208 |
Decanoic acid | 0.7980 | 1.0862 | 1.3711 | 0.8684 |
D-Glucosamine 6-phosphate(-1.15); 1-Amino-1-deoxy-scyllo-inositol 4-phosphate(-1.15); D-Galactosamine 1-phosphate(-1.15); | 1.7967 | 0.9410 | 0.3871 | 0.8751 |
Dihydroxyacetone phosphate | 0.5239 | 1.1923 | 1.4146 | 0.9383 |
D-myo-Inositol 1,2-cyclic phosphate/ 6-Deoxy-5-ketofructose 1-phosphate | 0.4989 | 1.4645 | 0.6148 | 1.4218 |
D-Xylonate/ L-Arabinonate/ D-Arabinonate/ D-Ribonate/ L-Xylonate/ L-Lyxonate/ 7-Methylxanthine(8)/ 3-Methylxanthine(8)/ 1-Methylxanthine(8) | 1.0237 | 1.5376 | 0.5635 | 0.8753 |
D-Xylulose 5-phosphate/alpha-D-Ribose 1-phosphate/D-Arabinose 5-phosphate | 0.6691 | 1.1860 | 0.4587 | 1.1599 |
Ethanolamine phosphate | 0.9357 | 0.7517 | 1.6061 | 0.7065 |
Evoxanthidine | 0.3393 | 2.4212 | 0.2930 | 0.7186 |
FAD_divalent | 0.7436 | 1.5342 | 0.4401 | 1.2821 |
Fructose 1,6-diphosphate | 0.3409 | 0.7158 | 1.4717 | NA |
Fructose 6-phosphate | 0.3473 | 1.3965 | 1.4261 | 0.8301 |
Fructoselysine 6-phosphate(-7) | 1.2501 | 1.2568 | 0.4905 | 1.0027 |
Fumaric acid | 0.5655 | 1.4512 | 0.6426 | 1.3407 |
gamma-L-Glutamyl-D-alanine | 0.7506 | 0.9056 | 1.2219 | 1.1219 |
GDP | 0.6274 | 1.3848 | 1.2307 | 0.7571 |
GDP-glucose/GDP-mannose/GDP-galactose | 0.7420 | 1.2434 | 0.6656 | 1.3489 |
Glucaric acid | 1.5925 | 0.7498 | 0.8125 | 0.8140 |
Gluconic acid | 1.0959 | 0.8955 | 0.6099 | 1.3987 |
Glucose 1-phosphate | 0.7703 | 1.1223 | 1.1779 | 0.9294 |
Glucose 6-phosphate | 0.4296 | 1.5194 | 1.2083 | 0.8427 |
Glucuronic acid | 0.8492 | 1.2164 | 0.7744 | 1.0472 |
Glyceric acid | 0.9264 | 1.2143 | 0.9763 | 0.8830 |
Glycerol 3-phosphate | 0.6542 | 1.5898 | 0.2986 | 1.4574 |
Glycocholic acid | 1.1153 | 1.2131 | 0.5716 | 1.1000 |
Glycyl-leucine/ N6-Acetyl-L-lysine/ 6-Acetamido-3-aminohexanoate/ N2-Acetyl-L-lysine | 1.1971 | 0.7702 | 1.1893 | 0.8050 |
GMP | 1.4866 | 1.1087 | 0.7471 | 0.6577 |
GTP | 0.6256 | 1.4117 | 1.0101 | 0.8902 |
Heptanoic acid | 0.6991 | 1.3139 | 0.9918 | 1.1182 |
Hexanoic acid | 0.8395 | 1.6639 | 0.7502 | 0.7464 |
Hippuric acid | 1.1075 | 0.8710 | 0.5876 | 1.2964 |
Homovanillic acid | 1.7494 | 0.9224 | 0.4809 | 0.8474 |
Hyoscyamine methylbromide | 0.4649 | 1.4189 | 0.4969 | 1.6193 |
IMP | 0.5616 | 1.6568 | 0.5611 | 1.2206 |
Inosine/ 2(alpha-D-Mannosyl)-D-glycerate | 0.5176 | 1.4981 | 0.8415 | 1.1428 |
Isethionic acid | 1.2434 | 0.7065 | 1.2804 | 0.7096 |
Isopimpinellin/ Glycerophosphoglycerol/ 2,3^,4,6-Tetrahydroxybenzophenone/ Pimpinellin | 2.0986 | 0.6565 | 0.6085 | 0.6364 |
Isosorbide mononitrate/ O-Oxalylhomoserine/ Nitrilotriacetic acid | 1.2157 | 1.3759 | 0.4508 | 0.9576 |
Lactic acid | 1.2784 | 0.7188 | 1.1932 | 0.8096 |
Lauric acid | 0.7953 | 1.1979 | 1.2247 | 0.7834 |
Malic acid | 0.5648 | 1.3003 | 0.7887 | 1.3461 |
myo-Inositol 1-phosphate/myo-Inositol 3-phosphate | 0.7312 | 1.5610 | 0.3640 | 1.3438 |
N2-(D-1-Carboxyethyl)-L-lysine | 0.8066 | 0.7906 | 1.1485 | 1.2193 |
N-(6-Aminohexanoyl)-6-aminohexanoate/ Leucyl-leucine | 0.5654 | 0.6686 | 1.3085 | 1.4574 |
N-Acetylaspartic acid | 0.8702 | 0.4799 | 2.1411 | 0.5088 |
N-Acetylglucosamine 1-phosphate | 1.1424 | 0.8811 | 1.0991 | 0.8774 |
N-Acetylglucosamine 6-phosphate | 1.0891 | 0.9696 | 1.0467 | 0.8946 |
N-Acetylglutamic acid | 2.0283 | 0.8230 | 0.2319 | 0.9168 |
N-Acetyl-L-citrulline | 0.9142 | 1.0062 | 0.8454 | 1.2342 |
N-Acetylneuraminic acid | 0.9469 | 1.0514 | 0.9097 | 1.0921 |
NAD+ | 0.9521 | 1.4768 | 0.3012 | 1.2699 |
NADP+ | 1.1257 | 1.2880 | 0.2890 | 1.1788 |
Octanoic acid | 0.6627 | 1.1464 | 1.2702 | 0.9207 |
Orthophosphate/ Potassium acetate | 0.9079 | 1.1531 | 0.9440 | 0.9950 |
Pantothenic acid | 0.8925 | 1.0776 | 0.9125 | 1.1174 |
Pelargonic acid | 0.6769 | 1.1289 | 1.0766 | 1.1175 |
Phosphocreatine | 0.5714 | 1.6318 | 0.4842 | 1.3125 |
Phosphoenolpyruvic acid | 0.3862 | 1.1803 | 1.3546 | 0.8611 |
Phthalic acid | 0.3005 | 0.6498 | 0.3168 | 2.9954 |
Prostaglandin E2 | NA | NA | 1.0000 | NA |
Psorospermin(0)/ S-[2-(N7-Guanyl)ethyl]-N-acetyl-L-cysteine/ Methylophiopogonone A(0) | 0.6914 | 0.7242 | 0.7965 | 1.6347 |
Pterin/ 3-Hydroxy-L-glutamate/ 4-Hydroxy-L-glutamate/ L-erythro-4-Hydroxyglutamate | 0.2190 | NA | 1.7810 | NA |
Pyruvic acid | 0.9963 | 1.1026 | 1.0157 | 0.6839 |
Ribose 5-phosphate | 0.3034 | 1.2606 | 0.9366 | 1.4888 |
Ribulose 5-phosphate | 0.4714 | 1.5975 | 0.7576 | 1.1735 |
Sedoheptulose 7-phosphate | 0.6174 | 1.9931 | 0.3592 | 1.0303 |
S-Glutathionyl-L-cysteine | 1.6983 | 0.8650 | 0.6083 | 0.8285 |
(S)-N-Methylcanadine | 0.5170 | 0.7614 | 0.7084 | 2.0132 |
Succinic acid | 0.8807 | 1.3496 | 0.3892 | 1.3805 |
Taurocholic acid | 2.3035 | 0.8881 | 0.3245 | 0.4839 |
Taurodeoxycholate/ Taurochenodeoxycholate/ Tauroursodeoxycholic acid | 2.1548 | 0.9287 | 0.3708 | 0.4409 |
Thiomorpholine 3-carboxylate | 1.0837 | 1.0793 | 0.3908 | 1.6545 |
Threonic acid | 1.4472 | 0.9000 | 0.9897 | 0.6630 |
Trovafloxacin/ Daidzin/ Chrysophanol 8-O-beta-D-glucoside/ Frangulin A/ Puerarin/ Flavonol 7-O-beta-D-glucoside/ Tenitramine | 0.4955 | 1.2008 | 0.7736 | 1.5301 |
UDP | 0.3231 | 1.5809 | 0.7605 | 0.9572 |
UDP-glucose/UDP-galactose | 0.8074 | 1.6933 | 0.3477 | 1.1516 |
UDP-glucuronic acid | 1.0717 | 1.0606 | 1.2295 | 0.6382 |
UDP-N-acetylglucosamine | 1.4710 | 1.0392 | 0.7881 | 0.7017 |
UMP | 0.6816 | 1.8137 | 0.3733 | 1.1314 |
Uric acid | 0.7085 | 1.2955 | 0.6646 | 1.3314 |
UTP | 0.2635 | 1.9681 | 0.5254 | 1.1202 |
Valeric acid | 0.9396 | 1.0112 | 1.1286 | NA |
Xanthine | 0.8624 | 1.2301 | 0.8231 | 1.0844 |
Xanthosine | 0.3706 | 1.2737 | 0.9840 | 1.3717 |
Factors:
F1 | Tissue Type:HCC (Hepatocellular carcinoma) |
F2 | Tissue Type:HCC-NT (surrounded non tumor of HCC) |
F3 | Tissue Type:ICC (Intrahepatic cholangiocarcinoma) |
F4 | Tissue Type:ICC-NT (surrounded non tumor of ICC) |