Metabolite_name RefMet_name CC_566_FF1 CC_567_FF2 CC_568_FF3 CC_569_FF4 CC_560_FR1 CC_561_FR2 CC_562_FR3 CC_563_FR4 CC_FS_1 CC_FS_2 CC_FS_5 CC_FS_7 CC_In1 CC_In3 CC_In4 CC_In6 CC_LD_4 CC_LD_5 CC_LD_6 CC_LD_8 Factors - Organ:Cecum | Treatment:SPF | Diet:Fiber-free Organ:Cecum | Treatment:SPF | Diet:Fiber-free Organ:Cecum | Treatment:SPF | Diet:Fiber-free Organ:Cecum | Treatment:SPF | Diet:Fiber-free Organ:Cecum | Treatment:SPF | Diet:Fiber-rich Organ:Cecum | Treatment:SPF | Diet:Fiber-rich Organ:Cecum | Treatment:SPF | Diet:Fiber-rich Organ:Cecum | Treatment:SPF | Diet:Fiber-rich Organ:Cecum | Treatment:SPF | Diet:Fiber-supplemented Organ:Cecum | Treatment:SPF | Diet:Fiber-supplemented Organ:Cecum | Treatment:SPF | Diet:Fiber-supplemented Organ:Cecum | Treatment:SPF | Diet:Fiber-supplemented Organ:Cecum | Treatment:SPF | Diet:Inulin-supplemented Organ:Cecum | Treatment:SPF | Diet:Inulin-supplemented Organ:Cecum | Treatment:SPF | Diet:Inulin-supplemented Organ:Cecum | Treatment:SPF | Diet:Inulin-supplemented Organ:Cecum | Treatment:SPF | Diet:LabDiet Organ:Cecum | Treatment:SPF | Diet:LabDiet Organ:Cecum | Treatment:SPF | Diet:LabDiet Organ:Cecum | Treatment:SPF | Diet:LabDiet 10-Hydroxydecanoate 10-Hydroxydecanoic acid 1-Aminoethylphosphonate 2^_3^-cCMP 2',3' cyclic CMP 2_3-DPG 2,3-Diphosphoglyceric acid 2_3-Pyridinedicarboxylate Quinolinic acid 37 23 9 8.9000 34 34 40 35 13 8.4000 31 13 22 14 20 22 27 17 21 29 2_4-Dihydroxypyrimidine-5-carboxylate Uracil-5-carboxylic acid 2_5-Dihydroxybenzoate Gentisic acid 36 59 67 93 68 2-Amino-3-phosphonopropionate 2-Aminoethylphosphonate Ciliatine 2-Deoxyglucose 6-phosphate 2-Deoxy-D-glucose 6-phosphate 2-Deoxyribose 1-phosphate Deoxyribose 1-phosphate 2-Furoate 2-Furoic acid 2-Hydroxy-4-methylpentanoate D-Leucic acid 2-Hydroxybutyrate 2-Hydroxybutyric acid 20 35 63 44 78 68 35 37 19 55 2-Hydroxyglutarate 2-Hydroxyglutaric acid 116 72 52 62 83 218 256 246 54 43 89 69 702 430 347 184 476 200 166 469 2-Hydroxyisobutyrate 2-Hydroxyisobutyric acid 2-Hydroxyoctanoate 2-Hydroxyoctanoic acid 2-Hydroxypentanoate 2-Hydroxyvaleric acid 20 15 17 16 32 25 35 27 12 12 10 8.7000 16 36 11 14 21 18 21 19 2-Hydroxyphenylacetate 2-Hydroxyphenylacetic acid 2-Isopropylmalate 2-Isopropylmalic acid 6.5000 5.3000 4.5000 7.9000 9.3000 5.8000 3.2000 1.7000 3.7000 4.1000 3.7000 2-Oxoadipate Oxoadipic acid 2-Oxobutyrate 3-Methyl pyruvic acid 2-Oxoglutarate 2-Oxoglutaric acid 1473 703 877 762 1894 3898 1693 1276 655 656 764 2267 1098 1417 1053 1434 1524 791 3507 2-Oxoisopentanoate Ketoisovaleric acid 532 265 363 409 1162 1601 986 609 377 395 517 963 417 666 605 817 1017 369 1674 2-Oxooctanoate 2PG 2-Phosphoglyceric acid 2-Quinolinecarboxylate Quinaldic acid 2-Thiopheneacetate 2-Thienylacetic acid 3-(2-Hydroxyphenyl)propionate 3-(2-Hydroxyphenyl)propanoic acid 3-(4-Hydroxyphenyl)propionate Desaminotyrosine 258 223 146 48 1358 1126 1116 1566 48 147 130 60 259 72 111 108 1475 1722 2135 1934 3^_5^-Cyclic dAMP 3^-AMP 3'-AMP 3-Hydroxy-3-methylglutarate 3-Hydroxymethylglutaric acid 13 302 84 85 209 8.5000 6.7000 26 6.1000 46 50 53 42 3-Hydroxybutyrate 3-Hydroxybutyric acid 105 131 911 394 583 624 99 120 99 87 104 103 108 132 538 540 1029 429 3-Hydroxypropionate Hydroxypropionic acid 130 130 151 177 208 89 106 107 167 222 143 316 3-Indolebutyrate 3-Indolebutyric acid 3-Indoxyl sulfate Indoxyl sulfate 3-Methylbutanoate Isovaleric acid 1923 1223 1374 1287 617 1143 791 550 736 850 1087 1229 555 894 799 1000 1680 1295 775 1866 3PG 3-Phosphoglyceric acid 3-Phenyllactate Phenyllactic acid 6.8000 65 54 72 204 136 51 63 33 22 119 3-Phenylpropionate Hydrocinnamic acid 3-Ureidopropionate Ureidopropionic acid 4-Acetylbutyrate 5-Ketocaproic acid 18 30 36 11 23 16 23 13 21 19 23 14 15 23 22 4-Hydroxy-3-methoxymandelate Vanillylmandelic acid 4-Hydroxymandelate 4-Hydroxymandelic acid 4-Methyl-2-oxopentanoate Ketoleucine 2749 1506 2062 52 2069 5244 7996 5031 2916 1714 1788 2289 4757 2007 3211 2959 4286 4769 2031 9084 4-Methylthio-2-oxobutyrate 2-Oxo-4-methylthiobutanoic acid 368 223 317 356 601 950 580 311 208 179 799 363 534 348 515 575 320 1040 4-Oxohexanoate 4-Oxopentanoate Levulinic acid 4-Pyridoxate 4-Pyridoxic acid 12 15 6.2000 4.1000 3.5000 5.7000 12 5.8000 6-Hydroxyhexanoate 6-Hydroxycaproic acid 57 54 38 35 27 28 30 38 12 6-Phosphogluconate 6-Phosphogluconic acid Acetyl CoA Acetyl-CoA Adenosine 3^_5^-diphosphate Adenosine 3',5'-diphosphate Adenosine 5^-phosphosulfate Adenosine phosphosulfate Adenylosuccinate Adenylsuccinic acid Adipate Adipic acid ADP ADP ADP-glucose ADP-glucose ADP-ribose ADP-ribose Allantoate Allantoic acid AMP AMP 54 ATP ATP Azelate Azelaic acid 44 51 44 22 194 167 252 212 47 36 39 30 25 21 15 26 155 98 67 90 Barbiturate Barbituric acid Benzoate Benzoic acid Benzoylformate Phenylglyoxylic acid Benzylsuccinate (R)-2-Benzylsuccinic acid Biotin Biotin Butyrate Butyric acid 20794 14415 24960 13578 50704 58415 31494 58664 21836 29365 29129 18922 30671 49929 34748 19159 56526 39881 47333 44507 cAMP 3',5' cyclic AMP Carbamoylaspartate Carbamoylaspartate 348 200 115 387 263 318 259 151 68 132 331 476 311 917 375 454 230 617 Carbamoylphosphate Carbamoylphosphate CDP CDP CDP-choline CDP-choline cGMP 3',5' cyclic GMP Cholate Cholic acid 9824 6462 15372 4314 2444 1973 2068 1845 6812 3305 13119 3605 2855 4487 7258 7057 2169 1789 1752 1578 cIMP cis-Aconitate cis-Aconitic acid 8.6000 18 11 9.9000 4.3000 7.8000 4.7000 6.4000 Citraconate Citraconic acid 6.2000 6.2000 3.7000 4.9000 2.2000 6.3000 5.8000 3.7000 7.2000 3.6000 4.7000 6.2000 Citramalate Citramalic acid 14 26 17 65 66 5.2000 3.6000 24 35 11 11 87 92 72 141 Citrate Citric acid 25 10 40 272 86 457 378 26 241 11 6 32 26 24 60 214 274 239 380 CMP CMP 3.9000 14 7.4000 34 21 7.4000 13 17 48 CMP-N-acetylneuraminate CMP-N-acetylneuraminic acid 24 13 CoA Coenzyme A Crotonate Crotonic acid CTP CTP Cysteate Cysteic acid 36 43 34 24 33 43 41 42 26 32 101 63 23 19 24 36 72 58 47 69 Cysteine S-sulfate Cysteine-S-sulfate 481 1148 1122 177 279 205 159 158 746 594 4717 2934 264 185 433 641 117 146 142 56 Cysteine sulfinate 3-Sulfino-alanine dADP dADP dAMP dAMP 5.6000 5.5000 7.5000 dATP dATP DCA Deoxycholic acid 3253 3841 2138 2042 578 835 851 546 3798 2492 4397 3841 569 1115 1913 1440 1366 805 554 664 dCDP dCDP dCMP dCMP 39 32 22 18 47 dCTP dCTP Deamido-NAD+ Nicotinic acid adenine dinucleotide Decanoate Capric acid 22 30 54 14 15 66 37 15 10 29 15 15 21 28 15 9.9000 dGTP dGTP DHAP Dihydroxyacetone phosphate Digalacturonate Digalacturonic acid 15 22 18 19 39 61 137 20 17 15 45 36 11 Dihydroorotate 4,5-Dihydroorotic acid 142 119 84 90 165 233 78 286 276 134 270 145 197 219 324 dITP dITP Dodecanedioate Dodecanedioic acid 9.6000 6.9000 7.1000 4.5000 105 99 144 120 6.8000 5.2000 5.2000 4.1000 5.9000 5 5.3000 5.7000 108 108 113 125 Dodecanoate Lauric acid 106 138 205 182 56 86 208 66 102 115 60 64 71 34 dTDP dTDP dTMP dTMP 6.9000 14 11 27 15 21 13 6.5000 51 dTTP dTTP dUDP dUDP dUMP dUMP dUTP dUTP F1_6P Fructose 1,6-bisphosphate F6P Fructose 6-phosphate 14 16 17 27 35 12 13 11 13 15 FAD FAD 11 19 20 25 18 16 16 32 Folate Folic acid Fumarate Fumaric acid 292 83 94 18 400 342 342 272 206 327 79 263 547 353 559 715 627 606 290 371 G1P Glucose 1-phosphate 50 38 73 4.6000 42 25 13 19 17 23 G3P Glyceraldehyde 3-phosphate G6P Glucose 6-phosphate 40 67 121 16 14 168 86 38 58 30 43 35 Galacturonate 1-phosphate GDP GDP GDP-mannose GDP-mannose Gluconate Gluconic acid 292 253 302 1698 Glucosamine 6-phosphate Glucosamine 6-phosphate Glucuronate Glucuronic acid 123 114 236 35 1745 915 1305 1771 269 102 553 297 261 121 261 287 748 830 944 909 Glutarate Glutaric acid 282 348 215 136 528 423 268 344 81 160 404 133 298 231 202 223 379 347 327 454 Glycerate Glyceric acid 840 706 500 552 1627 2009 1918 1425 817 912 735 679 1473 1399 2043 1749 1028 1307 1002 1296 Glycerophosphate sn-Glycero-3-phosphate 65 75 30 84 154 115 26 101 44 29 66 30 55 44 72 Glycocholate Glycocholic acid 35 18 36 10 8.4000 15 26 13 18 42 59 Glycolate Glycolic acid 803 690 686 605 1138 1494 1222 1272 958 967 967 937 951 1117 880 1042 1013 850 902 1208 Glyoxylate Glyoxylic acid GMP GMP 7.1000 15 GTP GTP Heptanoate Heptylic acid 20 19 18 Hexanoate Caproic acid 75 73 69 102 54 67 41 70 135 62 66 50 85 84 73 62 55 53 48 65 Hippurate Hippuric acid Homovanillate Homovanillic acid IDP IDP IMP IMP Indolelactate Indolelactic acid Isethionate 2-Hydroxyethanesulfonate 128 196 81 64 283 91 61 120 58 41 131 76 101 52 156 122 42 51 38 34 Isobutyryl CoA Isobutyryl-CoA Isocitrate Isocitric acid 22 7.3000 9.3000 9.5000 9.2000 11 Itaconate Itaconic acid 7 17 15 9.4000 10 13 ITP ITP Lactate Lactic acid 1505 1469 2837 3463 8838 3694 3532 20366 2018 3288 1818 1154 7508 1988 3027 1829 637 2674 1385 4738 Malate Malic acid 709 152 94 43 1646 1341 2049 2062 867 1266 182 562 2997 2875 2566 4221 2747 2961 1350 2066 Malonate Malonic acid 52 26 35 359 161 162 211 82 64 59 36 50 52 37 40 127 127 110 80 Malonyl CoA Malonyl-CoA Methanesulfonate Methanesulfonic acid Methyl sulfate Methyl sulfate 23 18 15 9.8000 22 (Methylthio)acetate (Methylthio)acetic acid m-Hydroxybenzoate 3-Hydroxybenzoic acid Mucate Galactaric acid N-Acetylaspartate N-Acetylaspartic acid 164 153 119 79 92 266 228 357 156 118 60 35 84 52 80 112 126 240 154 231 N-Acetyl-beta-alanine N-Acetyl-beta-alanine N-Acetylglucosamine 1-phosphate N-Acetylglucosamine 1-phosphate 110 9.8000 16 20 14 7.1000 8.1000 N-Acetylglucosamine 6-phosphate N-Acetyl-glucosamine 6-phosphate N-Acetylglutamate N-Acetylglutamic acid 238 123 121 122 144 279 301 236 152 113 128 103 175 188 210 223 241 248 155 278 N-Acetylleucine N-Acetylleucine 7.5000 9.7000 5.4000 12 11 9.4000 3.7000 4.9000 7.7000 5.8000 11 5.9000 14 11 25 20 8.4000 18 N-Acetylmethionine N-Acetylmethionine 23 23 28 5.9000 32 44 48 71 17 36 21 21 49 23 34 84 51 61 50 73 N-Acetylmuramate N-Acetylmuramic acid 197 121 70 9.5000 308 275 701 650 80 105 62 62 966 741 407 365 564 575 607 1266 N-Acetylneuraminate N-Acetylneuraminic acid 332 229 1496 115 2635 2068 969 1289 439 385 891 720 1728 225 949 1004 195 609 282 433 N-Acetylphenylalanine N-Acetylphenylalanine 6.3000 9.3000 6.4000 4.4000 3.9000 6.2000 4.2000 NAD+ NAD NADH NADH NADP+ NADP NADPH NADPH N-Carbamylglutamate Carglumic acid N-Formylaspartate N-Formyl-aspartic acid 13 36 38 24 28 32 34 N-Formylmethionine N-Formylmethionine 57 36 30 65 79 57 44 36 31 40 27 20 21 52 38 109 86 56 82 Nicotinate Nicotinic acid 809 655 507 169 1429 1439 1778 1760 612 557 459 413 1689 1632 1940 1730 1551 1365 1371 1703 o-Coumarate trans-o-Coumaric acid Octanoate Caprylic acid 28 25 21 8.3000 o-Hydroxybenzoate Salicylic acid o-Hydroxyhippurate Salicyluric acid O-Phosphoserine Phosphoserine Orotate Orotic acid 239 213 159 308 155 637 539 166 89 151 489 419 415 419 326 302 355 535 Orotidine 5^-monophosphate Orotidylic acid P1_ P4-Di(adenosine-5^) tetraphosphate Pantothenate Pantothenic acid 273 196 157 15 281 366 534 407 195 175 146 146 368 345 435 382 452 380 362 560 p-Coumarate cis-p-Coumaric acid Pelargonate Pelargonic acid 68 88 106 65 46 51 24 62 47 45 40 38 43 32 34 24 Pentanoate Valeric acid 4632 3605 4328 3722 1392 2258 1201 1205 2193 3760 3298 2997 2179 2543 2669 2414 4001 2926 2422 4014 PEP Phosphoenolpyruvic acid Phenaceturate Phenylacetylglycine Phenyl phosphate Phenyl phosphate Phenylpyruvate Phenylpyruvic acid 162 89 131 126 200 386 268 116 71 54 66 320 134 189 159 188 204 123 465 Phosphonoacetate Phosphonoacetate Phthalate Phthalic acid 13 2.8000 17 13 14 13 2.1000 3 2 2.4000 3.2000 2.4000 4 3.7000 3.8000 3.9000 p-Hydroxybenzoate 4-Hydroxybenzoic acid 74 107 51 160 176 63 98 44 51 88 39 84 50 45 65 113 87 p-Hydroxyphenylacetate 4-Hydroxyphenylacetic acid 572 Pimelate Pimelic acid 13 27 15 29 17 16 8.7000 15 Porphobilinogen Porphobilinogen Propionate Propionic acid 14950 9953 13243 8773 23360 23405 16796 14542 12169 22700 14260 13070 40443 36738 30704 31150 28917 24539 17884 26735 Prostaglandin E2 PGE2 Prostaglandin F2alpha PGF2alpha PRPP Phosphoribosyl pyrophosphate Pyrrole-2-carboxylate Pyrrole-2-carboxylic acid 16 7.4000 16 Pyruvate Pyruvic acid 1087 615 1244 1491 911 518 660 783 1856 459 842 1002 1085 1126 433 1873 Quinate Quinic acid 99 60 57 30 60 39 31 39 88 55 147 46 46 59 62 43 26 20 R5P Ribose 5-phosphate Ribulose 1_5-diphosphate Ribulose 1,5-bisphosphate Ru5P Ribulose 5-phosphate 31 25 S7P Sedoheptulose 7-phosphate Saccharate Glucaric acid Sebacate Sebacic acid 12 7.2000 6.1000 4.5000 52 42 67 52 5.9000 6.9000 4.4000 3.4000 4.9000 4.5000 3.4000 4.6000 33 22 23 30 Serine O-sulfate Serine-O-sulfate Shikimate Shikimic acid Sinapate Sinapic acid Sorbitol 6-phosphate Pseudouridine Succinate Succinic acid 1522 573 1462 447 3172 1149 1594 1480 1016 840 1675 1204 6373 2012 2747 839 1241 1020 635 2745 Succinyl CoA Succinyl-CoA Syringate Syringic acid 237 106 Tartrate Tartaric acid 39 29 15 16 20 Taurocholate Taurocholic acid 102 72 482 637 74 76 48 59 92 42 166 35 35 48 78 106 83 52 85 78 TDP-glucose dTDP-glucose Terephthalate Terephthalic acid 7.6000 7.2000 15 11 12 6 16 7.4000 7.1000 14 12 Threonate Threonic acid Tiglate Tiglic acid trans-4-Hydroxy-3-methoxycinnamate trans-Ferulic acid 172 161 142 5064 2131 4148 3950 173 136 295 145 236 190 215 186 1626 2081 1810 1419 trans-Aconitate trans-Aconitic acid trans-Cinnamate trans-Cinnamic acid Trehalose 6-phosphate Trehalose 6-phosphate UDP UDP UDP-glucose UDP-glucose UDP-glucuronate UDP-glucuronic acid UDP-N-acetylglucosamine UDP-N-acetylglucosamine 31 UMP UMP 10 52 13 21 29 13 17 23 19 41 16 Undecanoate Undecylic acid 8 5.4000 11 13 6.7000 10 12 16 8.6000 Urate Uric acid 189 210 155 47 327 1048 366 224 316 724 395 274 312 229 470 892 403 759 156 116 UTP UTP Xanthurenate Xanthurenic acid 13 8.5000 XMP XMP XTP Xanthosine 5-triphosphate