{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000093","ANALYSIS_ID":"AN000149","VERSION":"1","CREATED_ON":"2016-09-17"},

"PROJECT":{"PROJECT_TITLE":"Mitochondrial Dysfunction in Frontal Fibrosing Alopecia","PROJECT_SUMMARY":"The goal of this study was to characterize metabolic drift associated with frontal fibrosing alopecia (FFA), comparing same-patient affected/unaffected tissues as well as control patient tissue.","INSTITUTE":"Case Western Reserve University","DEPARTMENT":"Dermatology","LABORATORY":"Karnik Laboratory","LAST_NAME":"Karnik","FIRST_NAME":"Pratima","ADDRESS":"-","EMAIL":"psk11@case.edu","PHONE":"216-368-0209","FUNDING_SOURCE":"NIAMS grant R01 AR056245 and NIH Common Fund grant (Metabolomics) R01 grants to Pratima Karnik"},

"STUDY":{"STUDY_TITLE":"Metabolomics Analysis of Frontal Fibrosing Alopecia","STUDY_TYPE":"Unaffected and Affected patient scalp biopsies","STUDY_SUMMARY":"Scarring alopecia consists of a collection of disorders characterized by of hair follicles, replacement with fibrous scar tissue, and irreversible hair Alopecia affects men and women worldwide and can be a significant source of stress and depression for affected individuals. The purpose of this study was explore metabolic profiles in scalp tissue samples from normal control subjects and in matched samples obtained from affected (n=12) and unaffected (n=12) of the scalp in patients with lymphocytic Frontal Fibrosing Alopecia (FFA). fibrosing alopecia results from destruction of hair follicles by an lymphocytic infiltrate that is localized around the upper portion of the hair","INSTITUTE":"Case Western Reserve University","DEPARTMENT":"Dermatology","LABORATORY":"Karnik Lab","LAST_NAME":"Karnik","FIRST_NAME":"Pratima","ADDRESS":"-","EMAIL":"psk11@case.edu","PHONE":"216-368-0209","NUM_GROUPS":"3 groups-Paired unaffected and affected (n=12),Normals(n=6)","TOTAL_SUBJECTS":"Patients (N=12), Normals (N=6)","STUDY_COMMENTS":"Affected scalp biopsies were obtained from frontal scalp, Unaffected from scalp. Normal scalp biopsies were obtained from the occipital scalp."},

"SUBJECT":{"SUBJECT_TYPE":"Human","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606","AGE_OR_AGE_RANGE":"postmenopausal women","GENDER":"Female","SPECIES_GROUP":"Human"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"Patient_138",
"Sample ID":"Patient_138_FFA_A",
"Factors":{"condition":"FFA affected","location":"frontal scalp"}
},
{
"Subject ID":"Patient_139",
"Sample ID":"Patient_139_FFA_A",
"Factors":{"condition":"FFA affected","location":"frontal scalp"}
},
{
"Subject ID":"Patient_140",
"Sample ID":"Patient_140_FFA_A",
"Factors":{"condition":"FFA affected","location":"frontal scalp"}
},
{
"Subject ID":"Patient_141",
"Sample ID":"Patient_141_FFA_A",
"Factors":{"condition":"FFA affected","location":"frontal scalp"}
},
{
"Subject ID":"Patient_142",
"Sample ID":"Patient_142_FFA_A",
"Factors":{"condition":"FFA affected","location":"frontal scalp"}
},
{
"Subject ID":"Patient_143",
"Sample ID":"Patient_143_FFA_A",
"Factors":{"condition":"FFA affected","location":"frontal scalp"}
},
{
"Subject ID":"Patient_144",
"Sample ID":"Patient_144_FFA_A",
"Factors":{"condition":"FFA affected","location":"frontal scalp"}
},
{
"Subject ID":"Patient_145",
"Sample ID":"Patient_145_FFA_A",
"Factors":{"condition":"FFA affected","location":"frontal scalp"}
},
{
"Subject ID":"Patient_146",
"Sample ID":"Patient_146_FFA_A",
"Factors":{"condition":"FFA affected","location":"frontal scalp"}
},
{
"Subject ID":"Patient_147",
"Sample ID":"Patient_147_FFA_A",
"Factors":{"condition":"FFA affected","location":"frontal scalp"}
},
{
"Subject ID":"Patient_149",
"Sample ID":"Patient_149_FFA_A",
"Factors":{"condition":"FFA affected","location":"frontal scalp"}
},
{
"Subject ID":"Patient_150",
"Sample ID":"Patient_150_FFA_A",
"Factors":{"condition":"FFA affected","location":"frontal scalp"}
},
{
"Subject ID":"Patient_138",
"Sample ID":"Patient_138_FFA_U",
"Factors":{"condition":"FFA unaffected","location":"occipital scalp"}
},
{
"Subject ID":"Patient_139",
"Sample ID":"Patient_139_FFA_U",
"Factors":{"condition":"FFA unaffected","location":"occipital scalp"}
},
{
"Subject ID":"Patient_140",
"Sample ID":"Patient_140_FFA_U",
"Factors":{"condition":"FFA unaffected","location":"occipital scalp"}
},
{
"Subject ID":"Patient_141",
"Sample ID":"Patient_141_FFA_U",
"Factors":{"condition":"FFA unaffected","location":"occipital scalp"}
},
{
"Subject ID":"Patient_142",
"Sample ID":"Patient_142_FFA_U",
"Factors":{"condition":"FFA unaffected","location":"occipital scalp"}
},
{
"Subject ID":"Patient_143",
"Sample ID":"Patient_143_FF_U",
"Factors":{"condition":"FFA unaffected","location":"occipital scalp"}
},
{
"Subject ID":"Patient_144",
"Sample ID":"Patient_144_FFA_U",
"Factors":{"condition":"FFA unaffected","location":"occipital scalp"}
},
{
"Subject ID":"Patient_145",
"Sample ID":"Patient_145_FFA_U",
"Factors":{"condition":"FFA unaffected","location":"occipital scalp"}
},
{
"Subject ID":"Patient_146",
"Sample ID":"Patient_146_FFA_U",
"Factors":{"condition":"FFA unaffected","location":"occipital scalp"}
},
{
"Subject ID":"Patient_147",
"Sample ID":"Patient_147_FFA_U",
"Factors":{"condition":"FFA unaffected","location":"occipital scalp"}
},
{
"Subject ID":"Patient_149",
"Sample ID":"Patient_149_FFA_U",
"Factors":{"condition":"FFA unaffected","location":"occipital scalp"}
},
{
"Subject ID":"Patient_150",
"Sample ID":"Patient_150_FFA_U",
"Factors":{"condition":"FFA unaffected","location":"occipital scalp"}
},
{
"Subject ID":"Patient_DN338",
"Sample ID":"Patient_DN338_Normal",
"Factors":{"condition":"Scalp biopsy normal","location":"NA"}
},
{
"Subject ID":"Patient_GN048",
"Sample ID":"Patient_GN048_Normal",
"Factors":{"condition":"Scalp biopsy normal","location":"NA"}
},
{
"Subject ID":"Patient_KN336",
"Sample ID":"Patient_KN336_Normal",
"Factors":{"condition":"Scalp biopsy normal","location":"NA"}
},
{
"Subject ID":"Patient_LN339",
"Sample ID":"Patient_LN339_Normal",
"Factors":{"condition":"Scalp biopsy normal","location":"NA"}
},
{
"Subject ID":"Patient_PN200",
"Sample ID":"Patient_PN200_Normal",
"Factors":{"condition":"Scalp biopsy normal","location":"NA"}
},
{
"Subject ID":"Patient_TN089",
"Sample ID":"Patient_TN089_Normal",
"Factors":{"condition":"Scalp biopsy normal","location":"NA"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-","SAMPLE_TYPE":"4 mm Scalp biopsies"},

"TREATMENT":{"TREATMENT_SUMMARY":"No treatment"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"Metabolon’s standard solvent extraction method. The sample preparation process carried out using the automated MicroLab STAR® system from Hamilton Company. standards were added prior to the first step in the extraction process for QC Sample preparation was conducted using a proprietary series of organic and extractions to remove the protein fraction while allowing maximum recovery of molecules. The resulting extract was divided into two fractions; one for by LC and one for analysis by GC. Samples were placed briefly on a TurboVap® to remove the organic solvent. Each sample was then frozen and dried under Samples were then prepared for the appropriate instrument, either LC/MS or","SAMPLEPREP_PROTOCOL_FILENAME":"Metabolon_Methods_CASE-03-11VW.docx","SAMPLE_DERIVATIZATION":"50?L for GC/MS analysis using equal parts bistrimethyl-silyl-trifluoroacetamide solvent mixture"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_SUMMARY":"GC/MS and LC/MS/MS platforms","CHROMATOGRAPHY_TYPE":"GC","INSTRUMENT_NAME":"- (Thermo Fisher),Thermo-Finnigan Trace DSQ MS","COLUMN_NAME":"GCMS-5% phenyldimethyl silicone column, 2.1 mm 100 mm Waters BEH C18 1.7 um particle columns columns","CHROMATOGRAPHY_COMMENTS":"HPLC-3 ?m particle 2.1 mm 100 mm Aquasil C18 (ThermoFisher) column.LTQ mass (Thermo Fisher Scientific, Inc., Waltham, MA),Thermo-Finnigan Trace DSQ MS Fisher Scientific, Inc.)","COLUMN_TEMPERATURE":"40 C","SOLVENT_A":"HPLC-0.1% formic acid in water","SOLVENT_B":"HPLC-0.1% formic acid in methanol (0% B for 4 min, 0?50% B in 2 min, 50?80% B 5 min, 80?100% B in 1 min, and 100% for 2 min)."},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","LABORATORY_NAME":"Karnik Lab (Case Western Reserve University)"},

"MS":{"INSTRUMENT_NAME":"Thermo LTQ","INSTRUMENT_TYPE":"Single quadrupole","MS_TYPE":"ESI","ION_MODE":"NEGATIVE","MS_COMMENTS":"LC/MS (Negative)","CAPILLARY_TEMPERATURE":"60°C to 340°C"},

"MS_METABOLITE_DATA":{
"Units":"Unspecified",

"Data":[{"Metabolite":"10-heptadecenoate (17:1n7)","Patient_138_FFA_A":"0.2837","Patient_139_FFA_A":"7.4971","Patient_140_FFA_A":"0.5064","Patient_141_FFA_A":"0.6525","Patient_142_FFA_A":"0.2437","Patient_143_FFA_A":"1.6161","Patient_144_FFA_A":"3.3015","Patient_145_FFA_A":"0.2366","Patient_146_FFA_A":"0.2570","Patient_147_FFA_A":"0.5459","Patient_149_FFA_A":"4.6208","Patient_150_FFA_A":"0.7336","Patient_138_FFA_U":"1.4410","Patient_139_FFA_U":"1.0273","Patient_140_FFA_U":"1.3710","Patient_141_FFA_U":"0.9548","Patient_142_FFA_U":"0.9727","Patient_143_FF_U":"2.1100","Patient_144_FFA_U":"3.5315","Patient_145_FFA_U":"1.4115","Patient_146_FFA_U":"0.6769","Patient_147_FFA_U":"1.8805","Patient_149_FFA_U":"1.6527","Patient_150_FFA_U":"1.5784","Patient_DN338_Normal":"4.4161","Patient_GN048_Normal":"1.9121","Patient_KN336_Normal":"0.6496","Patient_LN339_Normal":"0.6263","Patient_PN200_Normal":"0.6637","Patient_TN089_Normal":"0.6257"},{"Metabolite":"10-nonadecenoate (19:1n9)","Patient_138_FFA_A":"0.3705","Patient_139_FFA_A":"9.2398","Patient_140_FFA_A":"0.7932","Patient_141_FFA_A":"0.6464","Patient_142_FFA_A":"0.2554","Patient_143_FFA_A":"0.9538","Patient_144_FFA_A":"2.6122","Patient_145_FFA_A":"0.2391","Patient_146_FFA_A":"0.4542","Patient_147_FFA_A":"0.6252","Patient_149_FFA_A":"3.1492","Patient_150_FFA_A":"1.0462","Patient_138_FFA_U":"0.8528","Patient_139_FFA_U":"1.1972","Patient_140_FFA_U":"1.3361","Patient_141_FFA_U":"0.7200","Patient_142_FFA_U":"0.7685","Patient_143_FF_U":"1.2573","Patient_144_FFA_U":"3.1107","Patient_145_FFA_U":"1.1265","Patient_146_FFA_U":"0.6429","Patient_147_FFA_U":"1.3089","Patient_149_FFA_U":"1.2585","Patient_150_FFA_U":"1.5776","Patient_DN338_Normal":"4.5020","Patient_GN048_Normal":"1.9783","Patient_KN336_Normal":"0.4610","Patient_LN339_Normal":"0.6162","Patient_PN200_Normal":"1.1195","Patient_TN089_Normal":"0.5986"},{"Metabolite":"15-methylpalmitate (isobar with 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}

}