{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000232","ANALYSIS_ID":"AN000347","VERSION":"1","CREATED_ON":"2016-09-17"},
"PROJECT":{"PROJECT_TITLE":"Metabolomic analysis of the small intestinal content of malnourished mice","PROJECT_SUMMARY":"-","INSTITUTE":"University of British Columbia","DEPARTMENT":"Microbiology and Immunology","LABORATORY":"Dr. B. Brett Finlay","LAST_NAME":"Finlay","FIRST_NAME":"Brett","ADDRESS":"2185 East Mall, Vancouver, BC, Canada V6T 1Z4","EMAIL":"bfinlay@msl.ubc.ca","PHONE":"-","FUNDING_SOURCE":"Canadian Institutes for Health Research"},
"STUDY":{"STUDY_TITLE":"Untargeted metabolomic analysis of the small intestinal content of malnourished","STUDY_TYPE":"Metabolomics","STUDY_SUMMARY":"A total of 8 samples from 6 week old, female C57BL/6 mice, treated for 3 weeks a malnourished diet or a control-fed isocaloric diet. Samples were taken from small intestinal fecal content at the terminus of the ileum.","INSTITUTE":"University of Victoria","DEPARTMENT":"The Uvic Proteomics and Metabolomics Innovation Centre","LAST_NAME":"Borchers","FIRST_NAME":"Christoph","ADDRESS":"#3101-4464 Markham St Victoria, BC Canada, V8Z 7X8","EMAIL":"christoph@proteincentre.com","PHONE":"-","NUM_GROUPS":"2","TOTAL_SUBJECTS":"8"},
"SUBJECT":{"SUBJECT_TYPE":"Animal","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090","GENOTYPE_STRAIN":"C57BL/6","AGE_OR_AGE_RANGE":"6 weeks at collection","GENDER":"Female","ANIMAL_ANIMAL_SUPPLIER":"Jackson Labs","ANIMAL_HOUSING":"Conventional","ANIMAL_FEED":"Low Protein, Low Fat Malnourished Diet|Isocaloric Control Diet","SUBJECT_COMMENTS":"2 subjects","CELL_PRIMARY_IMMORTALIZED":"Malnourished|Control"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"Control_SI_1",
"Sample ID":"CON1",
"Factors":{"Diet":"control"}
},
{
"Subject ID":"Control_SI_2",
"Sample ID":"CON2",
"Factors":{"Diet":"control"}
},
{
"Subject ID":"Control_SI_3",
"Sample ID":"CON3",
"Factors":{"Diet":"control"}
},
{
"Subject ID":"Control_SI_4",
"Sample ID":"CON4",
"Factors":{"Diet":"control"}
},
{
"Subject ID":"Malnourished_SI_1",
"Sample ID":"MAL1",
"Factors":{"Diet":"malnourished"}
},
{
"Subject ID":"Malnourished_SI_2",
"Sample ID":"MAL2",
"Factors":{"Diet":"malnourished"}
},
{
"Subject ID":"Malnourished_SI_3",
"Sample ID":"MAL3",
"Factors":{"Diet":"malnourished"}
},
{
"Subject ID":"Malnourished_SI_4",
"Sample ID":"MAL4",
"Factors":{"Diet":"malnourished"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-","SAMPLE_TYPE":"Small intestinal fecal contents","COLLECTION_TIME":"6 weeks of age","STORAGE_CONDITIONS":"-80 degrees","TISSUE_CELL_QUANTITY_TAKEN":"15-40mg"},
"TREATMENT":{"TREATMENT_SUMMARY":"4 mice were given a malnourished diet and 4 mice were untreated, fed a control"},
"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"Metabolite Extraction. Mouse small intestine digesta samples (luminal contents) collected, weighed and homogenized in water followed by addition of for metabolite extraction. After vortex mixing, 30 second sonication, and the clear supernatants were collected and dried under a gentle nitrogen gas The dried metabolite residues were dissolved in 40% acetonitrile containing formic acid, 4 ?L per mg of the raw material. After 15 sec vortex and 30 sec each sample was further diluted 1:2 with water. Twelve-?L aliquots were for untargeted metabolic fingerprinting by ultrahigh-performance liquid ? Fourier transform mass spectrometry (UPLC-FTMS)."},
"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"-","COLUMN_NAME":"C18"},
"ANALYSIS":{"ANALYSIS_TYPE":"MS","DETECTOR_TYPE":"FTMS","DATA_FORMAT":".raw"},
"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Thermo Q Exactive Orbitrap","INSTRUMENT_TYPE":"Orbitrap","MS_TYPE":"ESI","ION_MODE":"POSITIVE"},
"MS_METABOLITE_DATA":{
"Units":"Relative Abundance",
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