{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000310","ANALYSIS_ID":"AN000493","VERSION":"1","CREATED_ON":"January 14, 2016, 11:57 am"},

"PROJECT":{"PROJECT_TITLE":"Lupus lipidomics","PROJECT_SUMMARY":"The purpose of this study was to compare the metabolic and lipidomic profile of plasma from 3 month old lupus-prone (TC) and control (B6) mice.","INSTITUTE":"University of Florida","DEPARTMENT":"Pathology, Immunology & Laboratory Medicine","LABORATORY":"Laurence M. Morel Laboratory","LAST_NAME":"Morel","FIRST_NAME":"Laurence","ADDRESS":"College of Medicine 1395 Center Drive, D6-18 Gainesville, FL 32610-0275","EMAIL":"morel@ufl.edu","PHONE":"352-392-3790"},

"STUDY":{"STUDY_TITLE":"TC and B6 untreated plasma in lupus-prone mice lipidomics (part-II)","STUDY_TYPE":"untreated","STUDY_SUMMARY":"compare plasma samples from 3 month old lupus-prone (TC) and control (B6) mice","INSTITUTE":"University of Florida","DEPARTMENT":"SECIM","LABORATORY":"Laurence M. Morel Laboratory","LAST_NAME":"Morel","FIRST_NAME":"Laurence","ADDRESS":"College of Medicine 1395 Center Drive, D6-18 Gainesville, FL 32610-0275","EMAIL":"morel@ufl.edu","PHONE":"352-392-3790","NUM_GROUPS":"2","TOTAL_SUBJECTS":"17"},

"SUBJECT":{"SUBJECT_TYPE":"Animal","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090","GENOTYPE_STRAIN":"[C57BL-6J (B6)]/[B6.Sle1.Sle2.Sle3 (TC)]","AGE_OR_AGE_RANGE":"99 days/93-99 days","GENDER":"female","ANIMAL_ANIMAL_SUPPLIER":"in house/in house","ANIMAL_HOUSING":"SPF/SPF","ANIMAL_LIGHT_CYCLE":"standard|standard","ANIMAL_FEED":"standard|standard","ANIMAL_WATER":"standard|standard"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"-",
"Sample ID":"B6_F1",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F1_2",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F2",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F3",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F3_2",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F4",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F4_2",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F5",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"B6_F5_2",
"Factors":{"Strain":"C57BL/6J","Treatment":"control"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3646",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3646_2",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3649",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3649_2",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3651",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3651_2",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3668",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
},
{
"Subject ID":"-",
"Sample ID":"TC_f3668_2",
"Factors":{"Strain":"B6.Sle1.Sle2.Sle3 (TC)","Treatment":"lupus prone"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"None","COLLECTION_PROTOCOL_ID":"IACUC 201308189","SAMPLE_TYPE":"blood","COLLECTION_METHOD":"heart puncture","COLLECTION_TIME":"terminal","STORAGE_CONDITIONS":"-20C","COLLECTION_VIALS":"heparinized tubes","BLOOD_SERUM_OR_PLASMA":"plasma"},

"TREATMENT":{"TREATMENT_SUMMARY":"no treatement (controls for KD diet study)"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"None","SAMPLEPREP_PROTOCOL_FILENAME":"Lipidomics_LCMSProtocol.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_SUMMARY":"None","CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Thermo Dionex Ultimate 3000","COLUMN_NAME":"ACE Excel 2 C18-PFP (100 x 2.1mm, 2um)","METHODS_FILENAME":"Lipidomics_LCMSProtocol.pdf"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"Metabolomics_LCMSProtocol_plasma.pdf"},

"MS":{"INSTRUMENT_NAME":"Thermo Q Exactive Orbitrap","INSTRUMENT_TYPE":"Orbitrap","MS_TYPE":"ESI","ION_MODE":"NEGATIVE","MS_COMMENTS":"HESI Negative Peak Height"},

"MS_METABOLITE_DATA":{
"Units":"Peak height",

"Data":[{"Metabolite":"(+)-Blennin D","TC_f3646":"48300.00","TC_f3646_2":"44400.00","TC_f3649":"51700.00","TC_f3649_2":"924000.00","TC_f3651":"37600.00","TC_f3651_2":"36900.00","TC_f3668":"45100.00","TC_f3668_2":"52800.00","B6_F1":"1500000.00","B6_F1_2":"79700.00","B6_F2":"1040000.00","B6_F3":"31500.00","B6_F3_2":"69400.00","B6_F4":"129000.00","B6_F4_2":"738000.00","B6_F5":"39900.00"},{"Metabolite":"(25R)-3alpha,7alpha-dihydroxy-5beta-cholestan-27-oyl 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}