{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000701","ANALYSIS_ID":"AN001089","VERSION":"1","CREATED_ON":"July 1, 2017, 5:17 pm"},

"PROJECT":{"PROJECT_TITLE":"Differences in metabolism in mouse embryonic fibroblasts (control vs SCF-beta-TrCP knockout)","PROJECT_TYPE":"MS analysis","PROJECT_SUMMARY":"Metabolic phenotypes of a clock mutant mouse","INSTITUTE":"Florida State University","DEPARTMENT":"Biomedical Sciences","LABORATORY":"Lee Lab","LAST_NAME":"Lee","FIRST_NAME":"Choogon","ADDRESS":"Tallahassee, FL","EMAIL":"choogon.lee@med.fsu.edu","PHONE":"850-645-1478"},

"STUDY":{"STUDY_TITLE":"Differences in metabolism in mouse embryonic fibroblasts (control vs SCF-beta-TrCP knockout)","STUDY_TYPE":"MS analysis","STUDY_SUMMARY":"Mouse embryonic fibroblasts were grown in DMED supplemented with 10%FBS. The same number of cells were plated in eight 6cm dishes. When the cells were ~70% confluent, four dishes received ethanol (carrier) and the other four received tamoxifen (1uM final) to induce knockout. The cells and media were harvested 4 days later. The media harvested from control and knockout dishes will be compared with the starting medium. The cells were washed with cold PBS twice while they are attached to the dishes. The whole dish with cells attached were immediately frozen in dry ice and wrapped with aluminum foil and stored at -80C.","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@med.umich.edu","PHONE":"(734) 232-8175","NUM_GROUPS":"6","TOTAL_SUBJECTS":"3"},

"SUBJECT":{"SUBJECT_TYPE":"Mouse","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0003080",
"Sample ID":"S00013515",
"Factors":{"GENOTYPE":"Control","Sample type":"Fresh media"}
},
{
"Subject ID":"SU0003080",
"Sample ID":"S00013516",
"Factors":{"GENOTYPE":"Control","Sample type":"Spent media"}
},
{
"Subject ID":"SU0003080",
"Sample ID":"S00013517",
"Factors":{"GENOTYPE":"Knockout","Sample type":"Spent media"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013518",
"Factors":{"GENOTYPE":"Control","Sample type":"Fibroblasts"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013519",
"Factors":{"GENOTYPE":"Control","Sample type":"Fibroblasts"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013520",
"Factors":{"GENOTYPE":"Control","Sample type":"Fibroblasts"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013521",
"Factors":{"GENOTYPE":"Control","Sample type":"Fibroblasts"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013522",
"Factors":{"GENOTYPE":"Knockout","Sample type":"Fibroblasts"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013523",
"Factors":{"GENOTYPE":"Knockout","Sample type":"Fibroblasts"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013524",
"Factors":{"GENOTYPE":"Knockout","Sample type":"Fibroblasts"}
},
{
"Subject ID":"SU0003081",
"Sample ID":"S00013525",
"Factors":{"GENOTYPE":"Knockout","Sample type":"Fibroblasts"}
},
{
"Subject ID":"SU9999996",
"Sample ID":"S00020124",
"Factors":{"GENOTYPE":"Pooled","Sample type":"Spent media"}
},
{
"Subject ID":"SU9999996",
"Sample ID":"S00020125",
"Factors":{"GENOTYPE":"Pooled","Sample type":"Fibroblasts"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"A003 - Untargeted Metabolomics.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Agilent","COLUMN_NAME":"Waters Acquity HSS T3 (50 x 2.1mm, 1.8um)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"A003 - Untargeted Metabolomics.pdf"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 6530 QTOF","INSTRUMENT_TYPE":"QTOF","MS_TYPE":"ESI","ION_MODE":"NEGATIVE"},

"MS_METABOLITE_DATA":{
"Units":"peak area",

"Data":[{"Metabolite":"2-AMINO-4-METHYLPENTANOIC ACID (LEUCINE)","S00013515":"1391276","S00013516":"1110259","S00013517":"837851"},{"Metabolite":"2-OXOBUTANOATE","S00013515":"226672","S00013516":"71474","S00013517":"102198"},{"Metabolite":"3-HYDROXY-3-METHYL-GLUTARIC ACID","S00013515":"829412","S00013516":"954839","S00013517":"797239"},{"Metabolite":"4-ACETAMIDOBUTANOATE","S00013515":"124544","S00013516":"159546","S00013517":"138647"},{"Metabolite":"4-PYRIDOXIC ACID","S00013515":"26483","S00013516":"40237","S00013517":"26589"},{"Metabolite":"5-HYDROXYTRYPTOPHAN","S00013515":"32782","S00013516":"41014","S00013517":"36101"},{"Metabolite":"5-OXOPROLINE","S00013515":"27500000","S00013516":"34500000","S00013517":"54000000"},{"Metabolite":"5-OXOPROLINE - 1.1521429","S00013515":"20000000","S00013516":"34500000","S00013517":"54000000"},{"Metabolite":"ACONITIC ACID","S00013515":"28501","S00013516":"104982","S00013517":"262566"},{"Metabolite":"ALLANTOIN","S00013515":"75200","S00013516":"71515","S00013517":"76195"},{"Metabolite":"ASPARTATE","S00013515":"63662","S00013516":"61443","S00013517":"56896"},{"Metabolite":"AZELAIC ACID","S00013515":"32334","S00013516":"52621","S00013517":"36208"},{"Metabolite":"CITRAMALIC ACID","S00013515":"47960","S00013516":"39806","S00013517":"44563"},{"Metabolite":"CITRIC ACID","S00013515":"524972","S00013516":"1306839","S00013517":"7118927"},{"Metabolite":"CITRIC ACID - 1.1011429","S00013515":"559374","S00013516":"455608","S00013517":"871055"},{"Metabolite":"CORTISONE (M+HCOO)","S00013515":"","S00013516":"63597","S00013517":""},{"Metabolite":"CORTISONE - 13.411","S00013515":"","S00013516":"51006","S00013517":""},{"Metabolite":"CYTIDINE","S00013515":"17189","S00013516":"13120","S00013517":"26270"},{"Metabolite":"ELAIDIC ACID","S00013515":"17782","S00013516":"20668","S00013517":"50740"},{"Metabolite":"FOLIC ACID","S00013515":"926503","S00013516":"1142792","S00013517":"966264"},{"Metabolite":"FRUCTOSE - 0.6068571","S00013515":"546130","S00013516":"443684","S00013517":"369243"},{"Metabolite":"GLUCONIC ACID","S00013515":"","S00013516":"201518","S00013517":""},{"Metabolite":"GLUTAMINE","S00013515":"918666","S00013516":"475939","S00013517":"359480"},{"Metabolite":"GLUTAMINE - 0.6102857","S00013515":"49346","S00013516":"26265","S00013517":"20926"},{"Metabolite":"GLYCERALDEHYDE (-H2O)","S00013515":"159196","S00013516":"148200","S00013517":"81228"},{"Metabolite":"GLYCERALDEHYDE - 0.6068571","S00013515":"159196","S00013516":"148200","S00013517":"81228"},{"Metabolite":"GLYCERALDEHYDE - 0.6637143","S00013515":"1039625","S00013516":"1047592","S00013517":"928093"},{"Metabolite":"GLYCERALDEHYDE - 0.6767143","S00013515":"470857","S00013516":"512118","S00013517":"477674"},{"Metabolite":"GLYCERIC ACID (-H2O)","S00013515":"114799","S00013516":"333369","S00013517":"457552"},{"Metabolite":"GLYCERIC ACID - 0.76766676","S00013515":"","S00013516":"88225","S00013517":"57612"},{"Metabolite":"GLYCERIC ACID - 0.8618571","S00013515":"407632","S00013516":"368875","S00013517":"477665"},{"Metabolite":"HIPPURIC ACID","S00013515":"672120","S00013516":"936991","S00013517":"803579"},{"Metabolite":"HISTAMINE","S00013515":"","S00013516":"","S00013517":"76525"},{"Metabolite":"HYPOXANTHINE","S00013515":"146870","S00013516":"86263","S00013517":"54700"},{"Metabolite":"ISOLEUCINE","S00013515":"1224888","S00013516":"937092","S00013517":"688107"},{"Metabolite":"ITACONIC ACID","S00013515":"92442","S00013516":"297457","S00013517":"593387"},{"Metabolite":"L-HISTIDINE","S00013515":"195399","S00013516":"180819","S00013517":"166181"},{"Metabolite":"LYSINE","S00013515":"53278","S00013516":"54962","S00013517":"53018"},{"Metabolite":"MALATE","S00013515":"127838","S00013516":"304156","S00013517":"474014"},{"Metabolite":"METHIONINE","S00013515":"170298","S00013516":"101591","S00013517":""},{"Metabolite":"N-ACETYL-DL-GLUTAMIC ACID","S00013515":"18082","S00013516":"46452","S00013517":"115553"},{"Metabolite":"N-ACETYL-L-ALANINE","S00013515":"","S00013516":"96091","S00013517":"113711"},{"Metabolite":"N-ACETYL-L-ASPARTIC ACID","S00013515":"49818","S00013516":"","S00013517":""},{"Metabolite":"N-ACETYLGALACTOSAMINE (M+Cl)","S00013515":"133275","S00013516":"175652","S00013517":"163685"},{"Metabolite":"N-ACETYLGLYCINE - 0.90571433","S00013515":"156100","S00013516":"257522","S00013517":"212767"},{"Metabolite":"N-ALPHA-ACETYL-L-ASPARAGINE (2M-H)","S00013515":"17381","S00013516":"25367","S00013517":"35782"},{"Metabolite":"O-ACETYLSERINE","S00013515":"117007","S00013516":"31150","S00013517":"47996"},{"Metabolite":"PANTOTHENIC ACID","S00013515":"5982250","S00013516":"7181470","S00013517":"6310808"},{"Metabolite":"PANTOTHENIC ACID - 3.2937143","S00013515":"5246095","S00013516":"6211673","S00013517":"5527089"},{"Metabolite":"PHENYLACETIC ACID (M+HCOO)","S00013515":"85256","S00013516":"157939","S00013517":"230113"},{"Metabolite":"PYRUVIC ACID","S00013515":"378018","S00013516":"1112285","S00013517":"791446"},{"Metabolite":"PYRUVIC ACID - 0.9791428","S00013515":"107903","S00013516":"94345","S00013517":"70739"},{"Metabolite":"RAFFINOSE (M+Cl)","S00013515":"35752","S00013516":"38104","S00013517":"32557"},{"Metabolite":"RIBOFLAVIN (VITAMIN B2)","S00013515":"124121","S00013516":"117989","S00013517":"111264"},{"Metabolite":"RIBOFLAVIN (VITAMIN B2) - 7.6341434","S00013515":"63024","S00013516":"47115","S00013517":"46087"},{"Metabolite":"STACHYOSE (M+Cl)","S00013515":"23159","S00013516":"25419","S00013517":"21131"},{"Metabolite":"STEARIC ACID","S00013515":"42556","S00013516":"35026","S00013517":"31656"},{"Metabolite":"SUCCINATE","S00013515":"1247004","S00013516":"1328165","S00013517":"1171721"},{"Metabolite":"SUCCINATE - 1.3074285","S00013515":"35533","S00013516":"58240","S00013517":"59230"},{"Metabolite":"THYMIDINE","S00013515":"103803","S00013516":"115856","S00013517":"186444"},{"Metabolite":"TRYPTOPHAN","S00013515":"1828182","S00013516":"2036208","S00013517":"1615432"},{"Metabolite":"TYROSINE","S00013515":"3449796","S00013516":"2909711","S00013517":"2322563"},{"Metabolite":"URIC ACID","S00013515":"903416","S00013516":"1134205","S00013517":"810483"},{"Metabolite":"URIDINE (M-H)","S00013515":"2327152","S00013516":"1957182","S00013517":"2887925"},{"Metabolite":"URIDINE - 1.3322858","S00013515":"2267209","S00013516":"1907790","S00013517":"2815527"},{"Metabolite":"URIDINE - 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"Metabolites":[{"Metabolite":"2-AMINO-4-METHYLPENTANOIC ACID (LEUCINE)","moverz_quant":"131.0948","ri":"1.58","ri_type":"","pubchem_id":"6106","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"2-OXOBUTANOATE","moverz_quant":"102.0318","ri":"0.903","ri_type":"","pubchem_id":"58","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"3-HYDROXY-3-METHYL-GLUTARIC ACID","moverz_quant":"162.0529","ri":"1.623","ri_type":"","pubchem_id":"1662","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"4-ACETAMIDOBUTANOATE","moverz_quant":"145.0735","ri":"1.819","ri_type":"","pubchem_id":"18189","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"4-PYRIDOXIC ACID","moverz_quant":"183.053","ri":"1.879","ri_type":"","pubchem_id":"6723","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"5-HYDROXYTRYPTOPHAN","moverz_quant":"220.0842","ri":"1.784","ri_type":"","pubchem_id":"439280","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"5-OXOPROLINE","moverz_quant":"129.0426","ri":"1.145","ri_type":"","pubchem_id":"7405","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"5-OXOPROLINE - 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}

}