{ "METABOLOMICS WORKBENCH":{"STUDY_ID":"ST001083","ANALYSIS_ID":"AN001768","VERSION":"1","CREATED_ON":"October 29, 2018, 7:38 pm"}, "PROJECT":{"PROJECT_TITLE":"Preoperative Metabolic Signatures of Prostate Cancer Recurrence Following Radical Prostatectomy","PROJECT_SUMMARY":"Serum of two groups of patients were analyzed using MS and NMR to find predictive markers of recurrence","INSTITUTE":"Georgia Institute of Technology","LAST_NAME":"Fernandez","FIRST_NAME":"Facundo","ADDRESS":"901 Atlantic Dr NE, Atlanta, GA, 30332, USA","EMAIL":"fernandez@gatech.edu","PHONE":"404-385-4432"}, "STUDY":{"STUDY_TITLE":"Combined NMR and MS Analysis of PC patien serum (part-III)","STUDY_SUMMARY":"Serum of two groups of patients were analyzed using MS and NMR to find predictive markers of recurrence. Study Design factor Sample type represents samples with Recurrence (R) or No Recurrence (NR) of Cancer.","INSTITUTE":"Georgia Institute of Technology","LAST_NAME":"Fernandez","FIRST_NAME":"Facundo","ADDRESS":"901 Atlantic Dr NE, Atlanta, GA, 30332, USA","EMAIL":"fernandez@gatech.edu","PHONE":"404-385-4432"}, "SUBJECT":{"SUBJECT_TYPE":"Human","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606","AGE_OR_AGE_RANGE":"44-70","GENDER":"Male"}, "SUBJECT_SAMPLE_FACTORS":[ { "Subject ID":"-", "Sample ID":"S1", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S2", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S3", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S4", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S5", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S9", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S10", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S11", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S12", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S15", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S16", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S17", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S18", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S19", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S20", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S21", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S22", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S24", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S25", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S26", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S27", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S28", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S29", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S30", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S31", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S32", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S33", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S35", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S36", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S37", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S38", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S39", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S41", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S42", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S43", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S44", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S45", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S46", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S47", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S48", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S49", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S50", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S51", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S52", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S54", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S57", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S58", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S59", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S60", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S61", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S62", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S63", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S64", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S65", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S66", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S67", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S68", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S69", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S71", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S72", "Factors":{"Sample type":"No Recurrence"} }, { "Subject ID":"-", "Sample ID":"S73", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S74", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S75", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S76", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S78", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S79", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S80", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S82", "Factors":{"Sample type":"Recurrence"} }, { "Subject ID":"-", "Sample ID":"S83", "Factors":{"Sample type":"Recurrence"} } ], "COLLECTION":{"COLLECTION_SUMMARY":"After Emory Institutional Review Board (IRB) approval, patients were consented and blood collected in SST Serum Separation Tubes: Hemogard (Fisher Scientific). Serum was separated by centrifugation at 1300 rcf for 20 min at 4 °C. Serum aliquots were stored long term in liquid nitrogen until removed for analysis.","SAMPLE_TYPE":"Blood (serum)","STORAGE_CONDITIONS":"Described in summary"}, "TREATMENT":{"TREATMENT_SUMMARY":"N/A"}, "SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"Proteins were precipitated from serum samples using either MeOH (for HILIC LC/MS and NMR) or Isopropanol (for RP LC/MS)."}, "CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"-","INSTRUMENT_NAME":"-","COLUMN_NAME":"-"}, "ANALYSIS":{"ANALYSIS_TYPE":"NMR"}, "NM":{"INSTRUMENT_NAME":"Bruker Avance III HD 600 MHz","INSTRUMENT_TYPE":"FT-NMR","NMR_EXPERIMENT_TYPE":"1D-1H","SPECTROMETER_FREQUENCY":"600 MHz","NMR_SOLVENT":"D2O","NMR_TUBE_SIZE":"5 mm","NMR_RESULTS_FILE":"ST001083_AN001768_Results.txt UNITS:ppm"} }