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}, { "Subject ID":"MOUSE_153", "Sample ID":"345323_153", "Factors":{"Genotype":"Mvk"}, "Additional sample data":{"Gender":"M","zygosity":"+/-"} }, { "Subject ID":"MOUSE_154", "Sample ID":"328195_154", "Factors":{"Genotype":"Mvk"}, "Additional sample data":{"Gender":"F","zygosity":"+/-"} }, { "Subject ID":"MOUSE_155", "Sample ID":"328199_155", "Factors":{"Genotype":"Mvk"}, "Additional sample data":{"Gender":"F","zygosity":"+/-"} }, { "Subject ID":"MOUSE_156", "Sample ID":"349944_156", "Factors":{"Genotype":"Mvk"}, "Additional sample data":{"Gender":"F","zygosity":"+/-"} }, { "Subject ID":"MOUSE_157", "Sample ID":"366627_157", "Factors":{"Genotype":"Nek2"}, "Additional sample data":{"Gender":"M","zygosity":"-/-"} }, { "Subject ID":"MOUSE_158", "Sample ID":"349640_158", "Factors":{"Genotype":"Nek2"}, "Additional sample data":{"Gender":"M","zygosity":"-/-"} }, { "Subject ID":"MOUSE_159", "Sample ID":"349643_159", "Factors":{"Genotype":"Nek2"}, "Additional sample 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"Additional sample data":{"Gender":"F","zygosity":"-/-"} }, { "Subject ID":"MOUSE_167", "Sample ID":"496303_167", "Factors":{"Genotype":"Ulk3"}, "Additional sample data":{"Gender":"F","zygosity":"-/-"} }, { "Subject ID":"MOUSE_168", "Sample ID":"496304_168", "Factors":{"Genotype":"Ulk3"}, "Additional sample data":{"Gender":"F","zygosity":"-/-"} }, { "Subject ID":"MOUSE_169", "Sample ID":"237811_169", "Factors":{"Genotype":"Ptpn12"}, "Additional sample data":{"Gender":"M","zygosity":"+/-"} }, { "Subject ID":"MOUSE_170", "Sample ID":"237812_170", "Factors":{"Genotype":"Ptpn12"}, "Additional sample data":{"Gender":"M","zygosity":"+/-"} }, { "Subject ID":"MOUSE_171", "Sample ID":"206458_171", "Factors":{"Genotype":"Ptpn12"}, "Additional sample data":{"Gender":"M","zygosity":"+/-"} }, { "Subject ID":"MOUSE_172", "Sample ID":"248921_172", "Factors":{"Genotype":"Ptpn12"}, "Additional sample data":{"Gender":"F","zygosity":"+/-"} }, { "Subject ID":"MOUSE_173", "Sample ID":"249730_173", "Factors":{"Genotype":"Ptpn12"}, "Additional sample data":{"Gender":"F","zygosity":"+/-"} }, { "Subject ID":"MOUSE_174", "Sample ID":"249731_174", "Factors":{"Genotype":"Ptpn12"}, "Additional sample data":{"Gender":"F","zygosity":"+/-"} }, { "Subject ID":"MOUSE_175", "Sample ID":"69286_175", "Factors":{"Genotype":"Sra1"}, "Additional sample data":{"Gender":"M","zygosity":"-/-"} }, { "Subject ID":"MOUSE_176", "Sample ID":"69290_176", "Factors":{"Genotype":"Sra1"}, "Additional sample data":{"Gender":"M","zygosity":"-/-"} }, { "Subject ID":"MOUSE_177", "Sample ID":"73696_177", "Factors":{"Genotype":"Sra1"}, "Additional sample data":{"Gender":"M","zygosity":"-/-"} }, { "Subject ID":"MOUSE_178", "Sample ID":"55771_178", "Factors":{"Genotype":"Sra1"}, "Additional sample data":{"Gender":"F","zygosity":"-/-"} }, { "Subject ID":"MOUSE_179", "Sample ID":"55774_179", "Factors":{"Genotype":"Sra1"}, "Additional sample data":{"Gender":"F","zygosity":"-/-"} }, { "Subject ID":"MOUSE_180", "Sample 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"Sample ID":"115757_187", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"M","zygosity":"+/+"} }, { "Subject ID":"MOUSE_188", "Sample ID":"115864_188", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} }, { "Subject ID":"MOUSE_189", "Sample ID":"55857_189", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} }, { "Subject ID":"MOUSE_190", "Sample ID":"69499_190", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} }, { "Subject ID":"MOUSE_191", "Sample ID":"144610_191", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"M","zygosity":"+/+"} }, { "Subject ID":"MOUSE_192", "Sample ID":"187595_192", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"M","zygosity":"+/+"} }, { "Subject ID":"MOUSE_193", "Sample ID":"198313_193", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"M","zygosity":"+/+"} }, { "Subject 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}, { "Subject ID":"MOUSE_201", "Sample ID":"281970_201", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"M","zygosity":"+/+"} }, { "Subject ID":"MOUSE_202", "Sample ID":"209241_202", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} }, { "Subject ID":"MOUSE_203", "Sample ID":"220170_203", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} }, { "Subject ID":"MOUSE_204", "Sample ID":"229695_204", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} }, { "Subject ID":"MOUSE_205", "Sample ID":"237716_205", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} }, { "Subject ID":"MOUSE_206", "Sample ID":"257643_206", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} }, { "Subject ID":"MOUSE_207", "Sample ID":"307710_207", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"M","zygosity":"+/+"} }, { "Subject ID":"MOUSE_208", "Sample ID":"348926_208", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"M","zygosity":"+/+"} }, { "Subject ID":"MOUSE_209", "Sample ID":"365959_209", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"M","zygosity":"+/+"} }, { "Subject ID":"MOUSE_210", "Sample ID":"296904_210", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} }, { "Subject ID":"MOUSE_211", "Sample ID":"319741_211", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} }, { "Subject ID":"MOUSE_212", "Sample ID":"349029_212", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} }, { "Subject ID":"MOUSE_213", "Sample ID":"410683_213", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"M","zygosity":"+/+"} }, { "Subject ID":"MOUSE_214", "Sample ID":"441144_214", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"M","zygosity":"+/+"} }, { "Subject ID":"MOUSE_215", "Sample ID":"483044_215", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"M","zygosity":"+/+"} }, { "Subject ID":"MOUSE_216", "Sample ID":"417795_216", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} }, { "Subject ID":"MOUSE_217", "Sample ID":"432639_217", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} }, { "Subject ID":"MOUSE_218", "Sample ID":"448374_218", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} }, { "Subject ID":"MOUSE_219", "Sample ID":"510073_219", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"M","zygosity":"+/+"} }, { "Subject ID":"MOUSE_220", "Sample ID":"496096_220", "Factors":{"Genotype":"Null"}, "Additional sample data":{"Gender":"F","zygosity":"+/+"} } ], "COLLECTION":{"COLLECTION_SUMMARY":"Blood specimens were collected using the IMPC protocol https://www.mousephenotype.org/impress/","SAMPLE_TYPE":"Blood (plasma)"}, "TREATMENT":{"TREATMENT_SUMMARY":"30 genotypes and one group of wildtype mouse"}, "SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"Metabolites were extracted using standard protocols for GCMS and LCMS assays by the West Coast Metabolomics Center."}, "CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Waters Acquity I-Class","COLUMN_NAME":"Waters Acquity BEH C18 (100 x 2mm, 1.7um)"}, "ANALYSIS":{"ANALYSIS_TYPE":"MS"}, "MS":{"INSTRUMENT_NAME":"ABI Sciex 6500 QTrap","INSTRUMENT_TYPE":"Ion trap","MS_TYPE":"ESI","ION_MODE":"NEGATIVE","MS_COMMENTS":"For oxylipins, LC separation was conducted on the same column but mobile phase A was water with 0.1% acetic acid and B was acetonitrile:isopropanol 90:10 (v/v) with 0.1% acetic acid. Column is maintained at 45 °C at the flow rate of 250 µL/min. The 16 min gradient is: 0–1 min 25-40% B, 1–2.5 min 40-42% B, 2.5–4.5 min 42-50% B, 4.5–10.5 min 50-65% B, 10.5–12.5 min 65-75% B, 12.5–14 min 75-85% B, 14–14.5 min 85-95% B, 14.5–15 min 95-25% B, 15–16 min 25% B. Extracts were analyzed by liquid chromatography (Waters ACQUITY UPLC I-Class system) coupled to a Sciex 6500+ QTRAP hybrid, triple quadrupole linear ion trap mass spectrometer. 5 µL of each extract was injected. Scheduled multiple reaction monitoring (MRM) was performed with optimized collision energies, de-clustering potentials, and collision cell exit potentials for individual analyte. A LC-MRM targeted method was used to analyze both bile acids and steroids with positive and negative polarity switching. Oxylipins were analyzed in another LC-MRM method in negative ionization mode. All analytes were quantified against 6-point calibration curves using internal standards. Turbo Spray Ion Source parameters are: curtain gas (CUR) 25 psi, nebulizer gas (GS1) 50 psi, turbo-gas (GS2) 50 psi, electrospray voltage −4.5 kV/+3 kV, and source temperature 525 °C. Nitrogen was used as the collision gas. 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[M-H]- m/z":"395.310504","ESI mode":"(-) ESI","MRM":"395.3 / 395.3","retention times":"12.65","DP":"-125","CE":"-25","EP Entrance Potential":"-10","CXP Collision Cell Exil Potential":"-9","LOD (nM)":"int Std","LOQ (nM)":"int Std"},{"Metabolite":"Lithocholic acid-d5","InChIKey":"","Human Metabolome DB":"","KEGG ID":"","LipidMAPS":"","PubChem ID":"","short key":"LCA-d5","acc.mass (neutral)":"381.3291","formula":"C24H36D4O3","acc mass [M+H]+ resp. [M-H]- m/z":"380.321824","ESI mode":"(-) ESI","MRM":"380.3 / 380.3","retention times":"13.15","DP":"-135","CE":"-30","EP Entrance Potential":"-10","CXP Collision Cell Exil Potential":"-10","LOD (nM)":"int Std","LOQ (nM)":"int Std"}] } }