{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST001846","ANALYSIS_ID":"AN002990","VERSION":"1","CREATED_ON":"June 28, 2021, 12:36 pm"},

"PROJECT":{"PROJECT_TITLE":"Proteasome Inhibitor Related Cardiotoxicity","PROJECT_TYPE":"MS Untargeted Metabolomics from Murine Hearts","PROJECT_SUMMARY":"In this study we aimed to examine the acute metabolomic changes following proteasome inhibition with Bortezomib or Carfilzomib in murine heart.","INSTITUTE":"University of Zurich","DEPARTMENT":"Department of Hematology-Oncology. Kantonsspital St. Gallen","LABORATORY":"Experimental Hematolgy-KSSG","LAST_NAME":"Mendez","FIRST_NAME":"Max","ADDRESS":"Rorschacherstrasse 95, 9007, St. Gallen.","EMAIL":"maxmendez@runbox.com","PHONE":"+41 71 494 10 67"},

"STUDY":{"STUDY_TITLE":"Proteasome Inhibitor Related Cardiotoxicity (part I)","STUDY_SUMMARY":"BALB/c mice were injected with CFZ (16 mg/kg, iv), BTZ (1 mg/kg, iv), CFZ/atRA (CFZ: 16 mg/kg iv, atRA: 1 mg/kg iv) or Captisol (Vehicle, iv) (6 mice per cohort). ECGs were recorded under anesthesia at the end of 1h treatment and the mice were sacrificed by cervical dislocation. Hearts were extracted and were frozen and stored at -80°C until analysis","INSTITUTE":"University of Zurich","LAST_NAME":"Mendez","FIRST_NAME":"Max","ADDRESS":"Rorschacherstrasse 95. 9007, St.Gallen","EMAIL":"maxmendez@runbox.com","NUM_GROUPS":"4","TOTAL_SUBJECTS":"24","NUM_FEMALES":"24","PHONE":"+41 71 494 10 67"},

"SUBJECT":{"SUBJECT_TYPE":"Mammal","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090","GENOTYPE_STRAIN":"Balb/c","AGE_OR_AGE_RANGE":"8-12 weeks old","WEIGHT_OR_WEIGHT_RANGE":"20-25 g","GENDER":"Female","ANIMAL_FEED":"ad libitum","ANIMAL_WATER":"ad libitum"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"-",
"Sample ID":"QC_06_NEG",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_06_NEG","order":"1"}
},
{
"Subject ID":"-",
"Sample ID":"QC_07_NEG",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_07_NEG","order":"2"}
},
{
"Subject ID":"-",
"Sample ID":"QC_08_NEG",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_08_NEG","order":"3"}
},
{
"Subject ID":"-",
"Sample ID":"QC_09_NEG",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_09_NEG","order":"4"}
},
{
"Subject ID":"-",
"Sample ID":"QC_10_NEG",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_10_NEG","order":"5"}
},
{
"Subject ID":"-",
"Sample ID":"tCTRL1_NEG",
"Factors":{"class":"control"},
"Additional sample data":{"RAW_FILE_NAME":"tCTRL1_NEG","order":"6"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ1_NEG",
"Factors":{"class":"caseB"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ1_NEG","order":"7"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ.ATRA1_NEG",
"Factors":{"class":"caseC"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ.ATRA1_NEG","order":"8"}
},
{
"Subject ID":"-",
"Sample ID":"tBTZ1_NEG",
"Factors":{"class":"caseD"},
"Additional sample data":{"RAW_FILE_NAME":"tBTZ1_NEG","order":"9"}
},
{
"Subject ID":"-",
"Sample ID":"tCTRL2_NEG",
"Factors":{"class":"control"},
"Additional sample data":{"RAW_FILE_NAME":"tCTRL2_NEG","order":"10"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ2_NEG",
"Factors":{"class":"caseB"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ2_NEG","order":"11"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ.ATRA2_NEG",
"Factors":{"class":"caseC"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ.ATRA2_NEG","order":"12"}
},
{
"Subject ID":"-",
"Sample ID":"tBTZ2_NEG",
"Factors":{"class":"caseD"},
"Additional sample data":{"RAW_FILE_NAME":"tBTZ2_NEG","order":"13"}
},
{
"Subject ID":"-",
"Sample ID":"QC_11_NEG",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_11_NEG","order":"14"}
},
{
"Subject ID":"-",
"Sample ID":"tCTRL3_NEG",
"Factors":{"class":"control"},
"Additional sample data":{"RAW_FILE_NAME":"tCTRL3_NEG","order":"15"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ3_NEG",
"Factors":{"class":"caseB"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ3_NEG","order":"16"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ.ATRA3_NEG",
"Factors":{"class":"caseC"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ.ATRA3_NEG","order":"17"}
},
{
"Subject ID":"-",
"Sample ID":"tBTZ.3_NEG",
"Factors":{"class":"caseD"},
"Additional sample data":{"RAW_FILE_NAME":"tBTZ.3_NEG","order":"18"}
},
{
"Subject ID":"-",
"Sample ID":"tCTRL4_NEG",
"Factors":{"class":"control"},
"Additional sample data":{"RAW_FILE_NAME":"tCTRL4_NEG","order":"19"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ4_NEG",
"Factors":{"class":"caseB"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ4_NEG","order":"20"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ.ATRA4_NEG",
"Factors":{"class":"caseC"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ.ATRA4_NEG","order":"21"}
},
{
"Subject ID":"-",
"Sample ID":"tBTZ4_NEG",
"Factors":{"class":"caseD"},
"Additional sample data":{"RAW_FILE_NAME":"tBTZ4_NEG","order":"22"}
},
{
"Subject ID":"-",
"Sample ID":"tCTRL5_NEG",
"Factors":{"class":"control"},
"Additional sample data":{"RAW_FILE_NAME":"tCTRL5_NEG","order":"23"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ5_NEG",
"Factors":{"class":"caseB"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ5_NEG","order":"24"}
},
{
"Subject ID":"-",
"Sample ID":"QC_12_NEG",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_12_NEG","order":"25"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ.ATRA5_NEG",
"Factors":{"class":"caseC"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ.ATRA5_NEG","order":"26"}
},
{
"Subject ID":"-",
"Sample ID":"tBTZ5_NEG",
"Factors":{"class":"caseD"},
"Additional sample data":{"RAW_FILE_NAME":"tBTZ5_NEG","order":"27"}
},
{
"Subject ID":"-",
"Sample ID":"tCTRL6_NEG",
"Factors":{"class":"control"},
"Additional sample data":{"RAW_FILE_NAME":"tCTRL6_NEG","order":"28"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ6_NEG",
"Factors":{"class":"caseB"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ6_NEG","order":"29"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ.ATRA6_NEG",
"Factors":{"class":"caseC"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ.ATRA6_NEG","order":"30"}
},
{
"Subject ID":"-",
"Sample ID":"tBTZ6_NEG",
"Factors":{"class":"caseD"},
"Additional sample data":{"RAW_FILE_NAME":"tBTZ6_NEG","order":"31"}
},
{
"Subject ID":"-",
"Sample ID":"QC_13_NEG",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_13_NEG","order":"32"}
},
{
"Subject ID":"-",
"Sample ID":"QC_14_NEG",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_14_NEG","order":"33"}
},
{
"Subject ID":"-",
"Sample ID":"QC_15_NEG",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_15_NEG","order":"34"}
},
{
"Subject ID":"-",
"Sample ID":"QC_06_POS",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_06_POS","order":"1"}
},
{
"Subject ID":"-",
"Sample ID":"QC_07_POS",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_07_POS","order":"2"}
},
{
"Subject ID":"-",
"Sample ID":"QC_08_POS",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_08_POS","order":"3"}
},
{
"Subject ID":"-",
"Sample ID":"QC_09_POS",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_09_POS","order":"4"}
},
{
"Subject ID":"-",
"Sample ID":"QC_10_POS",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_10_POS","order":"5"}
},
{
"Subject ID":"-",
"Sample ID":"tCTRL1_POS",
"Factors":{"class":"control"},
"Additional sample data":{"RAW_FILE_NAME":"tCTRL1_POS","order":"6"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ1_POS",
"Factors":{"class":"caseB"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ1_POS","order":"7"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ.ATRA1_POS",
"Factors":{"class":"caseC"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ.ATRA1_POS","order":"8"}
},
{
"Subject ID":"-",
"Sample ID":"tBTZ1_POS",
"Factors":{"class":"caseD"},
"Additional sample data":{"RAW_FILE_NAME":"tBTZ1_POS","order":"9"}
},
{
"Subject ID":"-",
"Sample ID":"tCTRL2_POS",
"Factors":{"class":"control"},
"Additional sample data":{"RAW_FILE_NAME":"tCTRL2_POS","order":"10"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ2_POS",
"Factors":{"class":"caseB"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ2_POS","order":"11"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ.ATRA2_POS",
"Factors":{"class":"caseC"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ.ATRA2_POS","order":"12"}
},
{
"Subject ID":"-",
"Sample ID":"tBTZ2_POS",
"Factors":{"class":"caseD"},
"Additional sample data":{"RAW_FILE_NAME":"tBTZ2_POS","order":"13"}
},
{
"Subject ID":"-",
"Sample ID":"QC_11_POS",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_11_POS","order":"14"}
},
{
"Subject ID":"-",
"Sample ID":"tCTRL3_POS",
"Factors":{"class":"control"},
"Additional sample data":{"RAW_FILE_NAME":"tCTRL3_POS","order":"15"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ3_POS",
"Factors":{"class":"caseB"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ3_POS","order":"16"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ.ATRA3_POS",
"Factors":{"class":"caseC"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ.ATRA3_POS","order":"17"}
},
{
"Subject ID":"-",
"Sample ID":"tBTZ3_POS",
"Factors":{"class":"caseD"},
"Additional sample data":{"RAW_FILE_NAME":"tBTZ3_POS","order":"18"}
},
{
"Subject ID":"-",
"Sample ID":"tCTRL4_POS",
"Factors":{"class":"control"},
"Additional sample data":{"RAW_FILE_NAME":"tCTRL4_POS","order":"19"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ4_POS",
"Factors":{"class":"caseB"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ4_POS","order":"20"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ.ATRA4_POS",
"Factors":{"class":"caseC"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ.ATRA4_POS","order":"21"}
},
{
"Subject ID":"-",
"Sample ID":"tBTZ4_POS",
"Factors":{"class":"caseD"},
"Additional sample data":{"RAW_FILE_NAME":"tBTZ4_POS","order":"22"}
},
{
"Subject ID":"-",
"Sample ID":"tCTRL5_POS",
"Factors":{"class":"control"},
"Additional sample data":{"RAW_FILE_NAME":"tCTRL5_POS","order":"23"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ5_POS",
"Factors":{"class":"caseB"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ5_POS","order":"24"}
},
{
"Subject ID":"-",
"Sample ID":"QC_12_POS",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_12_POS","order":"25"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ.ATRA5_POS",
"Factors":{"class":"caseC"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ.ATRA5_POS","order":"26"}
},
{
"Subject ID":"-",
"Sample ID":"tBTZ5_POS",
"Factors":{"class":"caseD"},
"Additional sample data":{"RAW_FILE_NAME":"tBTZ5_POS","order":"27"}
},
{
"Subject ID":"-",
"Sample ID":"tCTRL6_POS",
"Factors":{"class":"control"},
"Additional sample data":{"RAW_FILE_NAME":"tCTRL6_POS","order":"28"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ6_POS",
"Factors":{"class":"caseB"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ6_POS","order":"29"}
},
{
"Subject ID":"-",
"Sample ID":"tCFZ.ATRA6_POS",
"Factors":{"class":"caseC"},
"Additional sample data":{"RAW_FILE_NAME":"tCFZ.ATRA6_POS","order":"30"}
},
{
"Subject ID":"-",
"Sample ID":"tBTZ6_POS",
"Factors":{"class":"caseD"},
"Additional sample data":{"RAW_FILE_NAME":"tBTZ6_POS","order":"31"}
},
{
"Subject ID":"-",
"Sample ID":"QC_13_POS",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_13_POS","order":"32"}
},
{
"Subject ID":"-",
"Sample ID":"QC_14_POS",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_14_POS","order":"33"}
},
{
"Subject ID":"-",
"Sample ID":"QC_15_POS",
"Factors":{"class":"QC"},
"Additional sample data":{"RAW_FILE_NAME":"QC_15_POS","order":"34"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"Anesthesia was induced with Ketamine 80 mg/kg intramuscular and maintained with Isoflurane 0.5%. Hearts were extracted immediately after cervical dislocation under anesthesia, snap frozen in dry ice and kept at -80°C until analysis.","SAMPLE_TYPE":"Cardiac tissue","STORAGE_CONDITIONS":"Described in summary"},

"TREATMENT":{"TREATMENT_SUMMARY":"Injections with CFZ (16 mg/kg, iv), BTZ (1 mg/kg, iv), CFZ+atRA (CFZ: 16 mg/kg iv, atRA: 1 mg/kg iv) or Captisol (Vehicle, iv)","TREATMENT_ROUTE":"i.v","TREATMENT_DOSE":"As described in treatment summary","TREATMENT_VEHICLE":"Captisol","ANIMAL_ANESTHESIA":"Induction with Ketamine 80 mg/kg intramuscular and maintained with Isoflurane 0.5%","ANIMAL_ENDP_EUTHANASIA":"1h","ANIMAL_ENDP_TISSUE_COLL_LIST":"1h","TREATMENT_COMPOUND":"Bortezomib (PS-34, Selleck Chemicals, S1013); Carfilzomib (PR-171, Selleck Chemicals, S2853); all-trans-Retinoic-Acid (Sigma-Aldrich, R2625); Captisol (Ligand Pharmaceuticals"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"1 Take 100 μL of each sample (including QC) into the corresponding 96-well plate; 2 Add 400 μL of precipitant (methanol: acetonitrile = 2:1, V/V) to the sample, seal the membrane with a film sealer, and shake for 1 min; 3 Place the sample in ice water for ultrasonication for 10 min; 4 Place the sonicated sample at -20°C for 2h; 5 Centrifuge the sample in a centrifuge (4,000 rpm * 4°C, 30 min), each sample taken 300 μL to the new 96-well plate; 6 Put the 96-well plate into a freeze dryer and drain it; 7 On the drained plate, add 300 μL of 10% methanol, mix with a Multi-Tube vorterer (parameter setting 2,500HZ, 3 min), and place in ice water for 10 min; 8 Centrifuge for 20 min (4,000 rpm * 4°C), take 250 μL of the supernatant on a new plate; 9 For each sample (excluding preparation QC), take 50 μL of each sample and mix into a QC sample, and the prepared supernatant is ready to be used.","SAMPLEPREP_PROTOCOL_FILENAME":"MetaboExtract_en.txt"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Waters Acquity","COLUMN_NAME":"Waters Acquity BEH HSS T3 (100 x 2.1mm, 1.8um)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","LABORATORY_NAME":"bgitechsolutions"},

"MS":{"INSTRUMENT_NAME":"Waters Xevo G2 XS QTOF","INSTRUMENT_TYPE":"QTOF","MS_TYPE":"ESI","ION_MODE":"NEGATIVE","MS_COMMENTS":"Capillary and sampling cone voltages were set at 2.0kV and 40.0V respectively. The mass spectrometry data were acquired in Centroid MSE mode. The TOF mass range was from 50-1200Da and the scan time was 0.2s. Peak Extraction and identification was performed with Progenesis QI (version2.2)","MS_RESULTS_FILE":"ST001846_AN002990_Results.txt UNITS:Peak Area Has m/z:Yes Has RT:Yes RT units:Minutes"}

}