{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST001971","ANALYSIS_ID":"AN003216","VERSION":"1","CREATED_ON":"November 8, 2021, 9:38 am"},

"PROJECT":{"PROJECT_TITLE":"Lipid Profiling in African-American Men with Prostate Cancer","PROJECT_SUMMARY":"We examined the lipidomes from cancer-benign matched prostate tissues in prostate cancer patients of African-American and European-American men to determine potential alterations in lipid metabolism which might explain the observed disparity in tumor progression.","INSTITUTE":"Baylor College of Medicine","LAST_NAME":"Sreekumar","FIRST_NAME":"Arun","ADDRESS":"one baylor Plaza","EMAIL":"Arun.Sreekumar@bcm.edu","PHONE":"713-798-3144"},

"STUDY":{"STUDY_TITLE":"Lipid Profiling in African-American Men with Prostate Cancer","STUDY_SUMMARY":"we examined the lipidomes from cancer-benign matched prostate tissues in PCa patients of AA and EA men to determine potential alterations in lipid metabolism which might explain the observed disparity in tumor progression.","INSTITUTE":"Baylor College of Medicine","LAST_NAME":"Sreekumar","FIRST_NAME":"Arun","ADDRESS":"One Baylor Plaza","EMAIL":"Arun.Sreekumar@bcm.edu","PHONE":"7137983144"},

"SUBJECT":{"SUBJECT_TYPE":"Human","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"1",
"Sample ID":"3609",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"2",
"Sample ID":"5050",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"4",
"Sample ID":"8678",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"5",
"Sample ID":"9657",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"7",
"Sample ID":"10188",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"8",
"Sample ID":"10222",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"9",
"Sample ID":"10506",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"10",
"Sample ID":"10524",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"14",
"Sample ID":"18476",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"15",
"Sample ID":"19051",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"16",
"Sample ID":"19205",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"17",
"Sample ID":"19338",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"18",
"Sample ID":"21274",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"19",
"Sample ID":"22346",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"21",
"Sample ID":"23979",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"25",
"Sample ID":"32567",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"26",
"Sample ID":"32595",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"29",
"Sample ID":"32871",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"30",
"Sample ID":"36673",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"33",
"Sample ID":"36916",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"34",
"Sample ID":"37654",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"35",
"Sample ID":"37687",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"41",
"Sample ID":"42792",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"42",
"Sample ID":"42957",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"44",
"Sample ID":"46698",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"46",
"Sample ID":"47605",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"55",
"Sample ID":"53983",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"56",
"Sample ID":"54182",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"59",
"Sample ID":"56765",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"69",
"Sample ID":"59701",
"Factors":{"Race":"AA","Diagnosis":"Benign"}
},
{
"Subject ID":"85",
"Sample ID":"14908",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"86",
"Sample ID":"15780",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"89",
"Sample ID":"17637",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"91",
"Sample ID":"18345",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"94",
"Sample ID":"19567",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"97",
"Sample ID":"20480",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"103",
"Sample ID":"23868",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"106",
"Sample ID":"39907",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"108",
"Sample ID":"25923",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"109",
"Sample ID":"25944",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"113",
"Sample ID":"31630",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"114",
"Sample ID":"39117",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"115",
"Sample ID":"36361",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"4858",
"Sample ID":"24783",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"4859",
"Sample ID":"24775",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"4904",
"Sample ID":"25055",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"4927",
"Sample ID":"25248",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"4929",
"Sample ID":"25271",
"Factors":{"Race":"EA","Diagnosis":"Benign"}
},
{
"Subject ID":"1",
"Sample ID":"3608",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"2",
"Sample ID":"5057",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"4",
"Sample ID":"8680",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"5",
"Sample ID":"9660",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"7",
"Sample ID":"10184",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"8",
"Sample ID":"10227",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"9",
"Sample ID":"10512",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"10",
"Sample ID":"10526",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"14",
"Sample ID":"18473",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"15",
"Sample ID":"19053",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"16",
"Sample ID":"19204",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"17",
"Sample ID":"19337",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"18",
"Sample ID":"21275",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"19",
"Sample ID":"22343",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"21",
"Sample ID":"23977",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"25",
"Sample ID":"32564",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"26",
"Sample ID":"32594",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"29",
"Sample ID":"32870",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"30",
"Sample ID":"36668",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"33",
"Sample ID":"36914",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"34",
"Sample ID":"37653",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"35",
"Sample ID":"37689",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"41",
"Sample ID":"42793",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"42",
"Sample ID":"42955",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"44",
"Sample ID":"46702",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"46",
"Sample ID":"47603",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"55",
"Sample ID":"53984",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"56",
"Sample ID":"54184",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"59",
"Sample ID":"56767",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"69",
"Sample ID":"59703",
"Factors":{"Race":"AA","Diagnosis":"Cancer"}
},
{
"Subject ID":"85",
"Sample ID":"14904",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"86",
"Sample ID":"15781",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"89",
"Sample ID":"17643",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"91",
"Sample ID":"18353",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"94",
"Sample ID":"19564",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"97",
"Sample ID":"20482",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"103",
"Sample ID":"23870",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"106",
"Sample ID":"25794",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"108",
"Sample ID":"25945",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"109",
"Sample ID":"26084",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"113",
"Sample ID":"36357",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"114",
"Sample ID":"39116",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"115",
"Sample ID":"39910",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"4858",
"Sample ID":"24786",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"4859",
"Sample ID":"24777",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"4904",
"Sample ID":"25054",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"4927",
"Sample ID":"25255",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
},
{
"Subject ID":"4929",
"Sample ID":"25273",
"Factors":{"Race":"EA","Diagnosis":"Cancer"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"Frozen pathologically-verified prostate tissues (PCa and adjacent benign) for metabolite were obtained from the Baylor College of Medicine Human Tissue Acquisition and Pathology Core of the Dan L. Duncan Cancer Center. All samples were collected during radical prostatectomy with informed consent and Institutional Review Board approval and stored retrospectively in a de-identified manner in the tumor bank. All tissue samples were reviewed for their tumor content by a GU pathologist prior to the metabolomics. Tissue obtained from the cancer samples contained at least 70% tumors, while benign tissues were free of tumors upon pathological examination.","SAMPLE_TYPE":"Adipose tissue"},

"TREATMENT":{"TREATMENT_SUMMARY":"None"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"We used 50 mg of tissues for sample preparation. Lipids were extracted using a modified Bligh-Dyer method. The extraction was carried out using 2:2:2 volume ratio of water/methanol/dichloromethane at room temperature after spiking internal standards (17:0LPC, 17:0PC, 17:0PE, 17:0PG, 17:0 ceramide, 17:0SM, 17:0PS, 17:0PA, 17:0TAG, 17:0MAG, DAG 16:0/18:1, CE 17:0, and 17.0-20.4 PI). The organic layer was collected and completely dried under nitrogen. Before MS analysis, the dried extract was resuspended in 100 μL of Buffer B (10:5:85 Acetonitrile/water/Isopropyl alcohol) containing 10mM NH4OAc and subjected to LC/MS. The lipidome was separated using reverse-phase chromatography."},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Shimadzu Nexera X2","COLUMN_NAME":"Waters Acquity BEH HSS T3 (100 x 2.1mm, 1.8um)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS"},

"MS":{"INSTRUMENT_NAME":"ABI Sciex 5600+ TripleTOF","INSTRUMENT_TYPE":"Triple TOF","MS_TYPE":"ESI","ION_MODE":"NEGATIVE","MS_COMMENTS":"single intensity normalized by overall median"},

"MS_METABOLITE_DATA":{
"Units":"single intensity normalized",

"Data":[{"Metabolite":"Unknown 72:6; [M-2H](2-)@9.28","3609":"-0.252013772","5050":"-0.381981465","8678":"-1.241238178","9657":"-0.005148328","10188":"-0.486388663","10222":"-0.092035197","10506":"-0.466912165","10524":"-1.018920137","18476":"0.609738093","19051":"0.702007275","19205":"-0.370649853","19338":"0.058685914","21274":"-0.444263814","22346":"0.331225918","23979":"0.091189606","32567":"-0.18718737","32595":"-1.631964395","32871":"0.041144265","36673":"0.108943826","36916":"0.7869096","37654":"-0.071694115","37687":"-0.017321186","42792":"0.381229235","42957":"-0.811665527","46698":"-0.479824417","47605":"-0.26125804","53983":"-1.725197844","54182":"0.350932389","56765":"0.120203928","59701":"-0.18912745","14908":"-0.16461093","15780":"-0.772433059","17637":"0.3610246","18345":"-0.315399119","19567":"-0.025972817","20480":"-0.284386174","23868":"-0.701152154","39907":"-0.259133927","25923":"-0.494653495","25944":"0.08097481","31630":"-1.644722313","39117":"-0.711653251","36361":"-0.301457222","24783":"-0.180257439","24775":"-0.329126681","25055":"-0.128019618","25248":"0.35460631","25271":"-0.028747524","3608":"-0.300980987","5057":"-0.337132534","8680":"-1.110902547","9660":"-0.599144092","10184":"-0.580769671","10227":"-0.371285712","10512":"-0.293183909","10526":"-0.563442495","18473":"0.911559241","19053":"0.727113821","19204":"0.921758526","19337":"0.053582078","21275":"-0.12072829","22343":"0.617475503","23977":"-0.518400305","32564":"0.005926957","32594":"-1.05471318","32870":"-0.354482815","36668":"-0.646394629","36914":"-1.442575271","37653":"-0.383014291","37689":"0.644149593","42793":"-0.013765831","42955":"0.669378316","46702":"0.310131381","47603":"-0.43305035","53984":"-0.346328342","54184":"0.275445412","56767":"-0.833811003","59703":"0.202307986","14904":"-1.31772453","15781":"-1.437517163","17643":"0.154055165","18353":"-0.463721266","19564":"-0.933265415","20482":"0.363781323","23870":"-0.785150181","25794":"-2.544098155","25945":"-0.260791508","26084":"-0.170130714","36357":"-0.061905259","39116":"-0.036003041","39910":"-0.800907798","24786":"-0.02278839","24777":"-0.123292256","25054":"-0.58086847","25255":"0.201119824","25273":"-0.408416213"},{"Metabolite":"Unknown 72:7; 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[M-H]-@7.94"},{"metabolite_name":"PE 42:6; [M-H]-@7.46"},{"metabolite_name":"PE 42:7; [M-H]-@6.96"},{"metabolite_name":"PE 42:8; [M-H]-@6.52"},{"metabolite_name":"PE 42:9; [M-H]-@6.13"},{"metabolite_name":"PE 44:4; [M-H]-@8.53"},{"metabolite_name":"PE 44:5; [M-H]-@8.09"},{"metabolite_name":"PG 34:0; [M-H]-@6.295"},{"metabolite_name":"PG 34:1; [M-H]-@5.82"},{"metabolite_name":"PG 34:2; [M-H]-@5.47"},{"metabolite_name":"PG 36:1; [M-H]-@6.45"},{"metabolite_name":"PG 36:2; [M-H]-@5.85"},{"metabolite_name":"PG 36:3; [M-H]-@5.37"},{"metabolite_name":"PG 36:4; [M-H]-@4.97"},{"metabolite_name":"PG 38:2; [M-H]-@6.46"},{"metabolite_name":"PG 38:3; [M-H]-@5.81"},{"metabolite_name":"PG 38:4; [M-H]-@5.44"},{"metabolite_name":"PG 38:4; [M-H]-@6.09"},{"metabolite_name":"PG 38:5; [M-H]-@5.15"},{"metabolite_name":"PG 38:6; [M-H]-@4.78"},{"metabolite_name":"PG 40:4; [M-H]-@6.12"},{"metabolite_name":"PG 40:5; [M-H]-@5.66"},{"metabolite_name":"PG 40:6; [M-H]-@5.37"},{"metabolite_name":"PG 40:7; [M-H]-@4.97"},{"metabolite_name":"PG 40:8; [M-H]-@4.65"},{"metabolite_name":"PG 42:10; [M-H]-@4.64"},{"metabolite_name":"PG 42:6; [M-H]-@6.07"},{"metabolite_name":"PG 42:7; [M-H]-@5.70"},{"metabolite_name":"PG 42:8; [M-H]-@5.22"},{"metabolite_name":"PG 42:9; [M-H]-@4.96"},{"metabolite_name":"PG 44:10; [M-H]-@5.13"},{"metabolite_name":"PG 44:11; [M-H]-@4.86"},{"metabolite_name":"PG 44:12; [M-H]-@4.53"},{"metabolite_name":"PG 44:8; [M-H]-@5.68"},{"metabolite_name":"PG 44:9; [M-H]-@5.47"},{"metabolite_name":"PI 36:2; [M-H]-@5.90"},{"metabolite_name":"PI 36:4; [M-H]-@5.25"},{"metabolite_name":"PI 38:3; [M-H]-@6.13"},{"metabolite_name":"PI 38:4; [M-H]-@5.91"},{"metabolite_name":"PI 39:4; [M-H]-@6.23"},{"metabolite_name":"PI 40:4; [M-H]-@6.50"},{"metabolite_name":"plasmenyl-PE 36:4; [M-H]-@6.67"},{"metabolite_name":"plasmenyl-PE 36:5; [M-H]-@6.35"},{"metabolite_name":"plasmenyl-PE 38:5; [M-H]-@6.76"},{"metabolite_name":"plasmenyl-PE 38:6; [M-H]-@6.60"},{"metabolite_name":"plasmenyl-PE 40:5; [M-H]-@7.47"},{"metabolite_name":"plasmenyl-PE 42:4; 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}

}