{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST002048","ANALYSIS_ID":"AN003335","VERSION":"1","CREATED_ON":"01-02-2024"},

"PROJECT":{"PROJECT_TITLE":"Effects of Zika virus infection on the metabolome of pregnant women: a longitudinal study","PROJECT_TYPE":"untargeted NMR analysis","PROJECT_SUMMARY":"Zika virus (ZIKV) is a mosquito-borne +ssRNA virus that can cause abnormal development in human fetal central neuron system and even lead to stillbirth. Despite the popularity of studies in this area recently, there is currently still no sufficient treatment for it. Knowledge on how ZIKV infection impact human metabolisms is still lacking. Untargeted metabolomics can profile the overall change in metabolites after infection, thus provide hypothesis for specific investigations. We here performed a Nuclear Magnetic Resonance spectroscopy (NMR)-based untargeted case-control metabolomics study on urine of ZIKV-infected pregnant women. We collected samples monthly from the first trimester till up to 6 months of ZIKV-infected and non-infected individuals and modelled the longitudinal data. We identified 3-aminoisobutyrate and trigonelline with significantly higher levels in the ZIKV-infected patients, while 11 metabolites (fucose, 2-hydroxyglutarate, N-acetyl-glutamine, dimethylamine, 4-hydroxyphenethyl alcohol, creatinine, lactate, threonine, histidine, pseudouridine, and 1-methylnicotinamide) had significantly lower levels. We also identified 2 metabolites, including glucose and 1-methylnicotinamide, where the trends over time of the intensity levels between the two groups were significantly different. These metabolites suggested further study on tryptophan, NAD+, pyrimidine, and glucose metabolisms. These metabolomic changes may lead us to a better understanding of mechanisms that cause poor fetal outcomes as well as effects of virus infection on human pregnancy.","INSTITUTE":"University of Georgia","LAST_NAME":"Zhang","FIRST_NAME":"Sicong","ADDRESS":"315 Riverbend Road, Complex Carbohydrate Research Center, Athens, Georgia, 30602, USA","EMAIL":"499753121@qq.com","PHONE":"7067151662","DOI":"http://dx.doi.org/10.21228/M8B13G"},

"STUDY":{"STUDY_TITLE":"Effects of Zika virus infection on the metabolome of pregnant women: a longitudinal study","STUDY_TYPE":"untargeted NMR analysis","STUDY_SUMMARY":"Zika virus (ZIKV) is a mosquito-borne +ssRNA virus that can cause abnormal development in human fetal central neuron system and even lead to stillbirth. Despite the popularity of studies in this area recently, there is currently still no sufficient treatment for it. Knowledge on how ZIKV infection impact human metabolisms is still lacking. Untargeted metabolomics can profile the overall change in metabolites after infection, thus provide hypothesis for specific investigations. We here performed a Nuclear Magnetic Resonance spectroscopy (NMR)-based untargeted case-control metabolomics study on urine of ZIKV-infected pregnant women. We collected samples monthly from the first trimester till up to 6 months of ZIKV-infected and non-infected individuals and modelled the longitudinal data. We identified 3-aminoisobutyrate and trigonelline with significantly higher levels in the ZIKV-infected patients, while 11 metabolites (fucose, 2-hydroxyglutarate, N-acetyl-glutamine, dimethylamine, 4-hydroxyphenethyl alcohol, creatinine, lactate, threonine, histidine, pseudouridine, and 1-methylnicotinamide) had significantly lower levels. We also identified 2 metabolites, including glucose and 1-methylnicotinamide, where the trends over time of the intensity levels between the two groups were significantly different. These metabolites suggested further study on tryptophan, NAD+, pyrimidine, and glucose metabolisms. These metabolomic changes may lead us to a better understanding of mechanisms that cause poor fetal outcomes as well as effects of virus infection on human pregnancy.","INSTITUTE":"University of Georgia","DEPARTMENT":"Biochemistry and Molecular Biology and Complex Carbohydrate Research Center","LABORATORY":"Edison Lab","LAST_NAME":"Zhang","FIRST_NAME":"Sicong","ADDRESS":"315 Riverbend Road, Complex Carbohydrate Research Center, Athens, Georgia, 30602, USA","EMAIL":"499753121@qq.com","PHONE":"7067151662","SUBMIT_DATE":"2022-01-03"},

"SUBJECT":{"SUBJECT_TYPE":"Human","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606","AGE_OR_AGE_RANGE":"15-37","GENDER":"Female","HUMAN_INCLUSION_CRITERIA":"pregnant, at the first trimester"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"0800130Y",
"Sample ID":"5003434607",
"Factors":{"Group":"after ZIKV+","Urine timepoint":"2"},
"Additional sample data":{"RAW_FILE_NAME":"71","Specimen date":"20160912","Notes":"-","ZIKV IgM":"neg","ZIKV RNA":"neg","momage":"19","momGAw":"5","momGAd":"4","dateentry":"8/25/16","outcome":"stillbirth","term":"preterm","race":"mestizos","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"no","history of other disease":"no","other disease specify":"no","res_result_rubella_igg_entry":"pos","res_result_rubella_igm_entry":"neg","res_result_cyto_igg_entry":"neg","res_result_cyto_igm_entry":"neg","res_result_herpes1_igg_entry":"neg","res_result_herpes1_igm_entry":"neg","res_result_herpes2_igg_entry":"neg","res_result_herpes2_igm_entry":"neg","res_result_toxoplas_igg_entry":"neg","res_result_toxoplas_igm_entry":"pos","res_result_rubella_igg_third timester":"-","res_result_rubella_igm_third timester":"-","res_result_cyto_igg_third timester":"-","res_result_cyto_igm_third timester":"-","res_result_herpes1_igg_third timester":"-","res_result_herpes1_igm_third timester":"-","res_result_herpes2_igg_third timester":"-","res_result_herpes2_igm_third timester":"-","res_result_toxoplas_igg_third timester":"-","res_result_toxoplas_igm_third timester":"-","res_result_rubella_igg_unschedulle visit":"-","res_result_rubella_igm_unschedulle visit":"-","res_result_cyto_igg_unschedulle visit":"-","res_result_cyto_igm_unschedulle visit":"-","res_result_herpes1_igg_unschedulle visit":"-","res_result_herpes1_igm_unschedulle visit":"-","res_result_herpes2_igg_unschedulle visit":"-","res_result_herpes2_igm_unschedulle visit":"-","res_result_toxoplas_igg_unschedulle visit":"-","res_result_toxoplas_igm_unschedulle visit":"-"}
},
{
"Subject ID":"0801120W",
"Sample ID":"5003440740",
"Factors":{"Group":"after ZIKV+","Urine timepoint":"2"},
"Additional sample data":{"RAW_FILE_NAME":"50","Specimen date":"20170403","Notes":"-","ZIKV IgM":"neg","ZIKV RNA":"neg","momage":"16","momGAw":"11","momGAd":"1","dateentry":"3/1/17","outcome":"livebirth","term":"term","race":"hispanic/latino","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"no","history of other disease":"no","other disease specify":"no","res_result_rubella_igg_entry":"pos","res_result_rubella_igm_entry":"neg","res_result_cyto_igg_entry":"pos","res_result_cyto_igm_entry":"neg","res_result_herpes1_igg_entry":"pos","res_result_herpes1_igm_entry":"neg","res_result_herpes2_igg_entry":"neg","res_result_herpes2_igm_entry":"neg","res_result_toxoplas_igg_entry":"neg","res_result_toxoplas_igm_entry":"eqv","res_result_rubella_igg_third timester":"-","res_result_rubella_igm_third timester":"-","res_result_cyto_igg_third timester":"-","res_result_cyto_igm_third timester":"-","res_result_herpes1_igg_third timester":"-","res_result_herpes1_igm_third timester":"-","res_result_herpes2_igg_third timester":"-","res_result_herpes2_igm_third timester":"-","res_result_toxoplas_igg_third timester":"-","res_result_toxoplas_igm_third timester":"-","res_result_rubella_igg_unschedulle visit":"-","res_result_rubella_igm_unschedulle visit":"-","res_result_cyto_igg_unschedulle visit":"-","res_result_cyto_igm_unschedulle visit":"-","res_result_herpes1_igg_unschedulle visit":"-","res_result_herpes1_igm_unschedulle visit":"-","res_result_herpes2_igg_unschedulle visit":"-","res_result_herpes2_igm_unschedulle visit":"-","res_result_toxoplas_igg_unschedulle visit":"-","res_result_toxoplas_igm_unschedulle visit":"-"}
},
{
"Subject ID":"0801150M",
"Sample ID":"5003440777",
"Factors":{"Group":"after ZIKV+","Urine timepoint":"2"},
"Additional sample data":{"RAW_FILE_NAME":"4","Specimen date":"20170313","Notes":"-","ZIKV IgM":"neg","ZIKV RNA":"neg","momage":"25","momGAw":"9","momGAd":"3","dateentry":"2/23/17","outcome":"livebirth","term":"term","race":"hispanic/latino","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"no","history of other disease":"no","other disease specify":"no","res_result_rubella_igg_entry":"pos","res_result_rubella_igm_entry":"neg","res_result_cyto_igg_entry":"neg","res_result_cyto_igm_entry":"neg","res_result_herpes1_igg_entry":"neg","res_result_herpes1_igm_entry":"neg","res_result_herpes2_igg_entry":"pos","res_result_herpes2_igm_entry":"neg","res_result_toxoplas_igg_entry":"neg","res_result_toxoplas_igm_entry":"eqv","res_result_rubella_igg_third timester":"-","res_result_rubella_igm_third timester":"-","res_result_cyto_igg_third timester":"-","res_result_cyto_igm_third timester":"-","res_result_herpes1_igg_third timester":"-","res_result_herpes1_igm_third timester":"-","res_result_herpes2_igg_third timester":"-","res_result_herpes2_igm_third timester":"-","res_result_toxoplas_igg_third timester":"-","res_result_toxoplas_igm_third timester":"-","res_result_rubella_igg_unschedulle visit":"-","res_result_rubella_igm_unschedulle visit":"-","res_result_cyto_igg_unschedulle visit":"-","res_result_cyto_igm_unschedulle visit":"-","res_result_herpes1_igg_unschedulle visit":"-","res_result_herpes1_igm_unschedulle visit":"-","res_result_herpes2_igg_unschedulle visit":"-","res_result_herpes2_igm_unschedulle visit":"-","res_result_toxoplas_igg_unschedulle visit":"-","res_result_toxoplas_igm_unschedulle visit":"-"}
},
{
"Subject ID":"0800180H",
"Sample ID":"5003443229",
"Factors":{"Group":"after ZIKV+","Urine timepoint":"2"},
"Additional sample data":{"RAW_FILE_NAME":"76","Specimen date":"20161026","Notes":"-","ZIKV IgM":"neg","ZIKV RNA":"neg","momage":"15","momGAw":"7","momGAd":"6","dateentry":"10/12/16","outcome":"livebirth","term":"preterm","race":"mestizos","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"no","history of other disease":"no","other disease specify":"no","res_result_rubella_igg_entry":"pos","res_result_rubella_igm_entry":"neg","res_result_cyto_igg_entry":"neg","res_result_cyto_igm_entry":"neg","res_result_herpes1_igg_entry":"neg","res_result_herpes1_igm_entry":"pos","res_result_herpes2_igg_entry":"neg","res_result_herpes2_igm_entry":"pos","res_result_toxoplas_igg_entry":"pos","res_result_toxoplas_igm_entry":"pos","res_result_rubella_igg_third timester":"pos","res_result_rubella_igm_third timester":"neg","res_result_cyto_igg_third timester":"-","res_result_cyto_igm_third timester":"neg","res_result_herpes1_igg_third timester":"neg","res_result_herpes1_igm_third timester":"pos","res_result_herpes2_igg_third timester":"neg","res_result_herpes2_igm_third timester":"pos","res_result_toxoplas_igg_third timester":"pos","res_result_toxoplas_igm_third timester":"neg","res_result_rubella_igg_unschedulle visit":"-","res_result_rubella_igm_unschedulle visit":"-","res_result_cyto_igg_unschedulle visit":"-","res_result_cyto_igm_unschedulle visit":"-","res_result_herpes1_igg_unschedulle visit":"-","res_result_herpes1_igm_unschedulle visit":"-","res_result_herpes2_igg_unschedulle visit":"-","res_result_herpes2_igm_unschedulle visit":"-","res_result_toxoplas_igg_unschedulle visit":"-","res_result_toxoplas_igm_unschedulle visit":"-"}
},
{
"Subject ID":"0801120W",
"Sample ID":"5003434815",
"Factors":{"Group":"after ZIKV+","Urine timepoint":"3"},
"Additional sample data":{"RAW_FILE_NAME":"64","Specimen date":"20170531","Notes":"-","ZIKV IgM":"neg","ZIKV RNA":"neg","momage":"16","momGAw":"11","momGAd":"1","dateentry":"3/1/17","outcome":"livebirth","term":"term","race":"hispanic/latino","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"no","history of other disease":"no","other disease specify":"no","res_result_rubella_igg_entry":"pos","res_result_rubella_igm_entry":"neg","res_result_cyto_igg_entry":"pos","res_result_cyto_igm_entry":"neg","res_result_herpes1_igg_entry":"pos","res_result_herpes1_igm_entry":"neg","res_result_herpes2_igg_entry":"neg","res_result_herpes2_igm_entry":"neg","res_result_toxoplas_igg_entry":"neg","res_result_toxoplas_igm_entry":"eqv","res_result_rubella_igg_third timester":"-","res_result_rubella_igm_third timester":"-","res_result_cyto_igg_third timester":"-","res_result_cyto_igm_third timester":"-","res_result_herpes1_igg_third timester":"-","res_result_herpes1_igm_third timester":"-","res_result_herpes2_igg_third timester":"-","res_result_herpes2_igm_third timester":"-","res_result_toxoplas_igg_third timester":"-","res_result_toxoplas_igm_third timester":"-","res_result_rubella_igg_unschedulle visit":"-","res_result_rubella_igm_unschedulle visit":"-","res_result_cyto_igg_unschedulle visit":"-","res_result_cyto_igm_unschedulle visit":"-","res_result_herpes1_igg_unschedulle visit":"-","res_result_herpes1_igm_unschedulle visit":"-","res_result_herpes2_igg_unschedulle visit":"-","res_result_herpes2_igm_unschedulle visit":"-","res_result_toxoplas_igg_unschedulle visit":"-","res_result_toxoplas_igm_unschedulle visit":"-"}
},
{
"Subject ID":"0800190E",
"Sample ID":"5003440039",
"Factors":{"Group":"after ZIKV+","Urine timepoint":"3"},
"Additional sample data":{"RAW_FILE_NAME":"43","Specimen date":"20170113","Notes":"-","ZIKV IgM":"neg","ZIKV RNA":"neg","momage":"22","momGAw":"10","momGAd":"5","dateentry":"12/5/16","outcome":"withdrawal","term":"N/A","race":"mestizos","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"no","history of other disease":"no","other disease specify":"no","res_result_rubella_igg_entry":"pos","res_result_rubella_igm_entry":"-","res_result_cyto_igg_entry":"pos","res_result_cyto_igm_entry":"-","res_result_herpes1_igg_entry":"pos","res_result_herpes1_igm_entry":"-","res_result_herpes2_igg_entry":"neg","res_result_herpes2_igm_entry":"-","res_result_toxoplas_igg_entry":"neg","res_result_toxoplas_igm_entry":"-","res_result_rubella_igg_third timester":"-","res_result_rubella_igm_third timester":"-","res_result_cyto_igg_third timester":"-","res_result_cyto_igm_third timester":"-","res_result_herpes1_igg_third timester":"-","res_result_herpes1_igm_third timester":"-","res_result_herpes2_igg_third timester":"-","res_result_herpes2_igm_third timester":"-","res_result_toxoplas_igg_third timester":"-","res_result_toxoplas_igm_third timester":"-","res_result_rubella_igg_unschedulle visit":"-","res_result_rubella_igm_unschedulle visit":"-","res_result_cyto_igg_unschedulle visit":"-","res_result_cyto_igm_unschedulle visit":"-","res_result_herpes1_igg_unschedulle visit":"-","res_result_herpes1_igm_unschedulle visit":"-","res_result_herpes2_igg_unschedulle visit":"-","res_result_herpes2_igm_unschedulle visit":"-","res_result_toxoplas_igg_unschedulle visit":"-","res_result_toxoplas_igm_unschedulle visit":"-"}
},
{
"Subject ID":"0800180H",
"Sample ID":"5003449126",
"Factors":{"Group":"after ZIKV+","Urine timepoint":"3"},
"Additional sample data":{"RAW_FILE_NAME":"34","Specimen date":"20161110","Notes":"-","ZIKV IgM":"neg","ZIKV RNA":"neg","momage":"15","momGAw":"7","momGAd":"6","dateentry":"10/12/16","outcome":"livebirth","term":"preterm","race":"mestizos","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"no","history of other disease":"no","other disease specify":"no","res_result_rubella_igg_entry":"pos","res_result_rubella_igm_entry":"neg","res_result_cyto_igg_entry":"neg","res_result_cyto_igm_entry":"neg","res_result_herpes1_igg_entry":"neg","res_result_herpes1_igm_entry":"pos","res_result_herpes2_igg_entry":"neg","res_result_herpes2_igm_entry":"pos","res_result_toxoplas_igg_entry":"pos","res_result_toxoplas_igm_entry":"pos","res_result_rubella_igg_third timester":"pos","res_result_rubella_igm_third timester":"neg","res_result_cyto_igg_third timester":"-","res_result_cyto_igm_third timester":"neg","res_result_herpes1_igg_third timester":"neg","res_result_herpes1_igm_third timester":"pos","res_result_herpes2_igg_third timester":"neg","res_result_herpes2_igm_third timester":"pos","res_result_toxoplas_igg_third timester":"pos","res_result_toxoplas_igm_third timester":"neg","res_result_rubella_igg_unschedulle visit":"-","res_result_rubella_igm_unschedulle visit":"-","res_result_cyto_igg_unschedulle visit":"-","res_result_cyto_igm_unschedulle visit":"-","res_result_herpes1_igg_unschedulle visit":"-","res_result_herpes1_igm_unschedulle visit":"-","res_result_herpes2_igg_unschedulle visit":"-","res_result_herpes2_igm_unschedulle visit":"-","res_result_toxoplas_igg_unschedulle visit":"-","res_result_toxoplas_igm_unschedulle visit":"-"}
},
{
"Subject ID":"0800270G",
"Sample ID":"5003449159",
"Factors":{"Group":"after ZIKV+","Urine timepoint":"3"},
"Additional sample data":{"RAW_FILE_NAME":"25","Specimen date":"20170324","Notes":"-","ZIKV IgM":"neg","ZIKV RNA":"neg","momage":"31","momGAw":"8","momGAd":"4","dateentry":"1/12/17","outcome":"livebirth","term":"term","race":"mestizos","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"no","history of other disease":"no","other disease specify":"no","res_result_rubella_igg_entry":"pos","res_result_rubella_igm_entry":"-","res_result_cyto_igg_entry":"pos","res_result_cyto_igm_entry":"-","res_result_herpes1_igg_entry":"pos","res_result_herpes1_igm_entry":"-","res_result_herpes2_igg_entry":"neg","res_result_herpes2_igm_entry":"-","res_result_toxoplas_igg_entry":"pos","res_result_toxoplas_igm_entry":"-","res_result_rubella_igg_third timester":"pos","res_result_rubella_igm_third timester":"neg","res_result_cyto_igg_third timester":"pos","res_result_cyto_igm_third timester":"neg","res_result_herpes1_igg_third timester":"pos","res_result_herpes1_igm_third timester":"neg","res_result_herpes2_igg_third timester":"neg","res_result_herpes2_igm_third timester":"neg","res_result_toxoplas_igg_third timester":"pos","res_result_toxoplas_igm_third timester":"neg","res_result_rubella_igg_unschedulle visit":"-","res_result_rubella_igm_unschedulle visit":"-","res_result_cyto_igg_unschedulle visit":"-","res_result_cyto_igm_unschedulle visit":"-","res_result_herpes1_igg_unschedulle visit":"-","res_result_herpes1_igm_unschedulle visit":"-","res_result_herpes2_igg_unschedulle visit":"-","res_result_herpes2_igm_unschedulle visit":"-","res_result_toxoplas_igg_unschedulle visit":"-","res_result_toxoplas_igm_unschedulle visit":"-"}
},
{
"Subject ID":"0800150S",
"Sample ID":"5003444020",
"Factors":{"Group":"after ZIKV+","Urine timepoint":"5"},
"Additional sample data":{"RAW_FILE_NAME":"26","Specimen date":"20161201","Notes":"-","ZIKV IgM":"neg","ZIKV RNA":"neg","momage":"20","momGAw":"6","momGAd":"5","dateentry":"8/31/16","outcome":"livebirth","term":"term","race":"mestizos","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"no","history of other disease":"no","other disease specify":"no","res_result_rubella_igg_entry":"-","res_result_rubella_igm_entry":"-","res_result_cyto_igg_entry":"-","res_result_cyto_igm_entry":"-","res_result_herpes1_igg_entry":"-","res_result_herpes1_igm_entry":"-","res_result_herpes2_igg_entry":"-","res_result_herpes2_igm_entry":"-","res_result_toxoplas_igg_entry":"-","res_result_toxoplas_igm_entry":"-","res_result_rubella_igg_third timester":"eqv","res_result_rubella_igm_third timester":"neg","res_result_cyto_igg_third timester":"pos","res_result_cyto_igm_third timester":"neg","res_result_herpes1_igg_third timester":"pos","res_result_herpes1_igm_third timester":"pos","res_result_herpes2_igg_third timester":"neg","res_result_herpes2_igm_third timester":"pos","res_result_toxoplas_igg_third timester":"pos","res_result_toxoplas_igm_third timester":"neg","res_result_rubella_igg_unschedulle visit":"-","res_result_rubella_igm_unschedulle visit":"-","res_result_cyto_igg_unschedulle visit":"-","res_result_cyto_igm_unschedulle visit":"-","res_result_herpes1_igg_unschedulle visit":"-","res_result_herpes1_igm_unschedulle visit":"-","res_result_herpes2_igg_unschedulle visit":"-","res_result_herpes2_igm_unschedulle visit":"-","res_result_toxoplas_igg_unschedulle visit":"-","res_result_toxoplas_igm_unschedulle visit":"-"}
},
{
"Subject ID":"0800050W",
"Sample ID":"5003448852",
"Factors":{"Group":"after ZIKV+","Urine timepoint":"5"},
"Additional sample data":{"RAW_FILE_NAME":"92","Specimen date":"20170111","Notes":"-","ZIKV IgM":"neg","ZIKV RNA":"neg","momage":"21","momGAw":"7","momGAd":"6","dateentry":"8/25/16","outcome":"livebirth","term":"term","race":"mestizos","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"no","history of other disease":"no","other disease specify":"no","res_result_rubella_igg_entry":"-","res_result_rubella_igm_entry":"-","res_result_cyto_igg_entry":"-","res_result_cyto_igm_entry":"-","res_result_herpes1_igg_entry":"-","res_result_herpes1_igm_entry":"-","res_result_herpes2_igg_entry":"-","res_result_herpes2_igm_entry":"-","res_result_toxoplas_igg_entry":"-","res_result_toxoplas_igm_entry":"-","res_result_rubella_igg_third timester":"neg","res_result_rubella_igm_third timester":"neg","res_result_cyto_igg_third timester":"neg","res_result_cyto_igm_third timester":"neg","res_result_herpes1_igg_third timester":"neg","res_result_herpes1_igm_third timester":"neg","res_result_herpes2_igg_third timester":"neg","res_result_herpes2_igm_third timester":"eqv","res_result_toxoplas_igg_third timester":"neg","res_result_toxoplas_igm_third timester":"neg","res_result_rubella_igg_unschedulle visit":"neg","res_result_rubella_igm_unschedulle visit":"-","res_result_cyto_igg_unschedulle visit":"neg","res_result_cyto_igm_unschedulle visit":"-","res_result_herpes1_igg_unschedulle visit":"neg","res_result_herpes1_igm_unschedulle visit":"-","res_result_herpes2_igg_unschedulle visit":"neg","res_result_herpes2_igm_unschedulle visit":"-","res_result_toxoplas_igg_unschedulle visit":"neg","res_result_toxoplas_igm_unschedulle visit":"-"}
},
{
"Subject ID":"0800270G",
"Sample ID":"5003450182",
"Factors":{"Group":"after ZIKV+","Urine timepoint":"5"},
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"Sample ID":"5003438940",
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"Additional sample data":{"RAW_FILE_NAME":"1122","Specimen date":"20170113","Notes":"-","ZIKV IgM":"neg","ZIKV RNA":"neg","momage":"23","momGAw":"11","momGAd":"3","dateentry":"11/7/16","outcome":"livebirth","term":"term","race":"white","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"no","history of other disease":"no","other disease specify":"no","res_result_rubella_igg_entry":"pos","res_result_rubella_igm_entry":"neg","res_result_cyto_igg_entry":"pos","res_result_cyto_igm_entry":"neg","res_result_herpes1_igg_entry":"pos","res_result_herpes1_igm_entry":"neg","res_result_herpes2_igg_entry":"neg","res_result_herpes2_igm_entry":"neg","res_result_toxoplas_igg_entry":"neg","res_result_toxoplas_igm_entry":"neg","res_result_rubella_igg_third timester":"pos","res_result_rubella_igm_third timester":"neg","res_result_cyto_igg_third timester":"pos","res_result_cyto_igm_third timester":"neg","res_result_herpes1_igg_third timester":"pos","res_result_herpes1_igm_third timester":"neg","res_result_herpes2_igg_third timester":"neg","res_result_herpes2_igm_third timester":"neg","res_result_toxoplas_igg_third timester":"neg","res_result_toxoplas_igm_third timester":"pos","res_result_rubella_igg_unschedulle visit":"-","res_result_rubella_igm_unschedulle visit":"-","res_result_cyto_igg_unschedulle visit":"-","res_result_cyto_igm_unschedulle visit":"-","res_result_herpes1_igg_unschedulle visit":"-","res_result_herpes1_igm_unschedulle visit":"-","res_result_herpes2_igg_unschedulle visit":"-","res_result_herpes2_igm_unschedulle visit":"-","res_result_toxoplas_igg_unschedulle visit":"-","res_result_toxoplas_igm_unschedulle visit":"-"}
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"Factors":{"Group":"External Control","Urine timepoint":"-"},
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"Sample ID":"5003436137",
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"Sample ID":"5003443754",
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"Sample ID":"5003444543",
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{
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"Sample ID":"5003437343",
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{
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"Sample ID":"5003437978",
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"Sample ID":"5003438082",
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"Sample ID":"5003440438",
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"Sample ID":"5003443548",
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"Sample ID":"5003445178",
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"Sample ID":"5003445191",
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{
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"Sample ID":"5003446147",
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{
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"Sample ID":"5003449264",
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"Sample ID":"5003437938",
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},
{
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"Sample ID":"5003448610",
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"Sample ID":"5003449100",
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"Sample ID":"5003449124",
"Factors":{"Group":"ZIKV-","Urine timepoint":"-3"},
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"Sample ID":"5003437690",
"Factors":{"Group":"ZIKV+","Urine timepoint":"3"},
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"Sample ID":"5003437998",
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"Sample ID":"5003450379",
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{
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"Sample ID":"5003434416",
"Factors":{"Group":"ZIKV-","Urine timepoint":"-4"},
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{
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"Sample ID":"5003440026",
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"Sample ID":"5003443073",
"Factors":{"Group":"ZIKV-","Urine timepoint":"-4"},
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"Sample ID":"5003445524",
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"Sample ID":"5003445758",
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"Sample ID":"5003445859",
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"Sample ID":"5003448928",
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"Sample ID":"5003449902",
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"Sample ID":"5003436209",
"Factors":{"Group":"ZIKV+","Urine timepoint":"4"},
"Additional sample data":{"RAW_FILE_NAME":"111","Specimen date":"20170113","Notes":"-","ZIKV IgM":"pos","ZIKV RNA":"neg","momage":"30","momGAw":"13","momGAd":"-","dateentry":"11/21/16","outcome":"livebirth","term":"term","race":"hispanic/latino","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"no","history of other disease":"no","other disease specify":"no","res_result_rubella_igg_entry":"pos","res_result_rubella_igm_entry":"-","res_result_cyto_igg_entry":"pos","res_result_cyto_igm_entry":"-","res_result_herpes1_igg_entry":"pos","res_result_herpes1_igm_entry":"-","res_result_herpes2_igg_entry":"neg","res_result_herpes2_igm_entry":"-","res_result_toxoplas_igg_entry":"pos","res_result_toxoplas_igm_entry":"-","res_result_rubella_igg_third timester":"pos","res_result_rubella_igm_third timester":"neg","res_result_cyto_igg_third timester":"pos","res_result_cyto_igm_third timester":"neg","res_result_herpes1_igg_third timester":"pos","res_result_herpes1_igm_third timester":"pos","res_result_herpes2_igg_third timester":"neg","res_result_herpes2_igm_third timester":"pos","res_result_toxoplas_igg_third timester":"pos","res_result_toxoplas_igm_third timester":"neg","res_result_rubella_igg_unschedulle visit":"-","res_result_rubella_igm_unschedulle visit":"-","res_result_cyto_igg_unschedulle visit":"-","res_result_cyto_igm_unschedulle visit":"-","res_result_herpes1_igg_unschedulle visit":"-","res_result_herpes1_igm_unschedulle visit":"-","res_result_herpes2_igg_unschedulle visit":"-","res_result_herpes2_igm_unschedulle visit":"-","res_result_toxoplas_igg_unschedulle visit":"-","res_result_toxoplas_igm_unschedulle visit":"-"}
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"Sample ID":"5003445650",
"Factors":{"Group":"ZIKV+","Urine timepoint":"4"},
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{
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"Sample ID":"5003448998",
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{
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"Sample ID":"5003448903",
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"Sample ID":"5003452628",
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{
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"Sample ID":"5003443709",
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{
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"Sample ID":"5003447129",
"Factors":{"Group":"ZIKV-","Urine timepoint":"-6"},
"Additional sample data":{"RAW_FILE_NAME":"46","Specimen date":"20161219","Notes":"-","ZIKV IgM":"neg","ZIKV RNA":"neg","momage":"20","momGAw":"12","momGAd":"5","dateentry":"8/16/16","outcome":"livebirth","term":"term","race":"mestizos","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"no","history of other disease":"no","other disease specify":"-","res_result_rubella_igg_entry":"pos","res_result_rubella_igm_entry":"neg","res_result_cyto_igg_entry":"neg","res_result_cyto_igm_entry":"neg","res_result_herpes1_igg_entry":"neg","res_result_herpes1_igm_entry":"eqv","res_result_herpes2_igg_entry":"neg","res_result_herpes2_igm_entry":"eqv","res_result_toxoplas_igg_entry":"pos","res_result_toxoplas_igm_entry":"pos","res_result_rubella_igg_third timester":"pos","res_result_rubella_igm_third timester":"neg","res_result_cyto_igg_third timester":"neg","res_result_cyto_igm_third timester":"neg","res_result_herpes1_igg_third timester":"neg","res_result_herpes1_igm_third timester":"pos","res_result_herpes2_igg_third timester":"neg","res_result_herpes2_igm_third timester":"pos","res_result_toxoplas_igg_third timester":"pos","res_result_toxoplas_igm_third timester":"neg","res_result_rubella_igg_unschedulle visit":"pos","res_result_rubella_igm_unschedulle visit":"neg","res_result_cyto_igg_unschedulle visit":"neg","res_result_cyto_igm_unschedulle visit":"neg","res_result_herpes1_igg_unschedulle visit":"neg","res_result_herpes1_igm_unschedulle visit":"neg","res_result_herpes2_igg_unschedulle visit":"neg","res_result_herpes2_igm_unschedulle visit":"neg","res_result_toxoplas_igg_unschedulle visit":"pos","res_result_toxoplas_igm_unschedulle visit":"neg"}
},
{
"Subject ID":"0800440H",
"Sample ID":"5003450978",
"Factors":{"Group":"ZIKV-","Urine timepoint":"-6"},
"Additional sample data":{"RAW_FILE_NAME":"52","Specimen date":"20170403","Notes":"0800870F_20170310 not found","Replaced","ZIKV IgM":"neg","ZIKV RNA":"neg","momage":"21","momGAw":"11","momGAd":"-","dateentry":"11/4/16","outcome":"livebirth","term":"term","race":"hispanic/latino","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"yes","history of other disease":"yes","other disease specify":"Asma","res_result_rubella_igg_entry":"pos","res_result_rubella_igm_entry":"neg","res_result_cyto_igg_entry":"neg","res_result_cyto_igm_entry":"neg","res_result_herpes1_igg_entry":"neg","res_result_herpes1_igm_entry":"neg","res_result_herpes2_igg_entry":"neg","res_result_herpes2_igm_entry":"neg","res_result_toxoplas_igg_entry":"neg","res_result_toxoplas_igm_entry":"neg","res_result_rubella_igg_third timester":"pos","res_result_rubella_igm_third timester":"neg","res_result_cyto_igg_third timester":"neg","res_result_cyto_igm_third timester":"neg","res_result_herpes1_igg_third timester":"neg","res_result_herpes1_igm_third timester":"neg","res_result_herpes2_igg_third timester":"neg","res_result_herpes2_igm_third timester":"neg","res_result_toxoplas_igg_third timester":"neg","res_result_toxoplas_igm_third timester":"pos","res_result_rubella_igg_unschedulle visit":"-","res_result_rubella_igm_unschedulle visit":"-","res_result_cyto_igg_unschedulle visit":"-","res_result_cyto_igm_unschedulle visit":"-","res_result_herpes1_igg_unschedulle visit":"-","res_result_herpes1_igm_unschedulle visit":"-","res_result_herpes2_igg_unschedulle visit":"-","res_result_herpes2_igm_unschedulle visit":"-","res_result_toxoplas_igg_unschedulle visit":"-","res_result_toxoplas_igm_unschedulle visit":"-"}
},
{
"Subject ID":"0800050W",
"Sample ID":"5003437763",
"Factors":{"Group":"ZIKV+","Urine timepoint":"99 (02)"},
"Additional sample data":{"RAW_FILE_NAME":"75","Specimen date":"20161011","Notes":"-","ZIKV IgM":"neg","ZIKV RNA":"pos","momage":"21","momGAw":"7","momGAd":"6","dateentry":"8/25/16","outcome":"livebirth","term":"term","race":"mestizos","history of malaria":"no","history of anemia":"no","history of tuberculosis":"no","history of cancer":"no","history of diabetes":"no","history of parasites":"no","history  of cardiovascular disease":"no","history of respiratory disease":"no","history of other disease":"no","other disease specify":"no","res_result_rubella_igg_entry":"-","res_result_rubella_igm_entry":"-","res_result_cyto_igg_entry":"-","res_result_cyto_igm_entry":"-","res_result_herpes1_igg_entry":"-","res_result_herpes1_igm_entry":"-","res_result_herpes2_igg_entry":"-","res_result_herpes2_igm_entry":"-","res_result_toxoplas_igg_entry":"-","res_result_toxoplas_igm_entry":"-","res_result_rubella_igg_third timester":"neg","res_result_rubella_igm_third timester":"neg","res_result_cyto_igg_third timester":"neg","res_result_cyto_igm_third timester":"neg","res_result_herpes1_igg_third timester":"neg","res_result_herpes1_igm_third timester":"neg","res_result_herpes2_igg_third timester":"neg","res_result_herpes2_igm_third timester":"eqv","res_result_toxoplas_igg_third timester":"neg","res_result_toxoplas_igm_third timester":"neg","res_result_rubella_igg_unschedulle visit":"neg","res_result_rubella_igm_unschedulle visit":"-","res_result_cyto_igg_unschedulle visit":"neg","res_result_cyto_igm_unschedulle visit":"-","res_result_herpes1_igg_unschedulle visit":"neg","res_result_herpes1_igm_unschedulle visit":"-","res_result_herpes2_igg_unschedulle visit":"neg","res_result_herpes2_igm_unschedulle visit":"-","res_result_toxoplas_igg_unschedulle visit":"neg","res_result_toxoplas_igm_unschedulle visit":"-"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"At each visit, women were given a physical examination and blood, urine, saliva, and vaginal fluid samples were collected as per ZIP study protocols (see attachment). In between monthly visits, women would also collect a urine sample at home to be brought to the next monthly visit or collected at a biweekly visit to the clinic.","COLLECTION_PROTOCOL_FILENAME":"Lebov_Study_protocol.pdf","SAMPLE_TYPE":"Urine","STORAGE_CONDITIONS":"-80℃"},

"TREATMENT":{"TREATMENT_SUMMARY":"No treatment"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"In brief, each sample was centrifuged at 3500g and then 540µl of supernatant was added by 60µl NMR buffer (1.5M KH2PO4 in D2O with a final concentration of 0.33 mM DSS, pH = 7.4). After this, we centrifuged the sample again at 4000g and transferred 590 µl supernatant to the 5mm NMR tubes in racks of 96 tubes (Bruker Biospin, USA).","SAMPLEPREP_PROTOCOL_FILENAME":"zika_01_sz_urine_extraction.pdf"},

"CHROMATOGRAPHY":[],

"ANALYSIS":{"LABORATORY_NAME":"Edison Lab","ANALYSIS_TYPE":"NMR"},

"NM":{"INSTRUMENT_NAME":"Bruker 600MHz","INSTRUMENT_TYPE":"FT-NMR","NMR_EXPERIMENT_TYPE":"1D-1H","FIELD_FREQUENCY_LOCK":"D2O","STANDARD_CONCENTRATION":"0.33 mM","SPECTROMETER_FREQUENCY":"600 MHz","NMR_PROBE":"CryoProbe","NMR_SOLVENT":"1.5M KH2PO4 in D2O with a final concentration of 0.33 mM DSS, pH = 7.4","NMR_TUBE_SIZE":"5 mm","SHIMMING_METHOD":"topshim","PULSE_SEQUENCE":"noesypr1d","WATER_SUPPRESSION":"presat","PULSE_WIDTH":"18.06","POWER_LEVEL":"-7.45 dB","RECEIVER_GAIN":"90.5","OFFSET_FREQUENCY":"2820.68","PRESATURATION_POWER_LEVEL":"41.4 dB","CHEMICAL_SHIFT_REF_CPD":"DSS","TEMPERATURE":"27","NUMBER_OF_SCANS":"128","DUMMY_SCANS":"4","ACQUISITION_TIME":"2.72 s","RELAXATION_DELAY":"4","SPECTRAL_WIDTH":"20.0276 ppm","NUM_DATA_POINTS_ACQUIRED":"65382","REAL_DATA_POINTS":"65536","LINE_BROADENING":"0.3","CHEMICAL_SHIFT_REF_STD":"DSS","BINNED_INCREMENT":"Manual"}

}