{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000154","ANALYSIS_ID":"AN000245","VERSION":"1","CREATED_ON":"01-15-2019"},

"PROJECT":{"PROJECT_TITLE":"Metabolic effects of Noxa","PROJECT_SUMMARY":"labeled glutamine metabolomics on Noxa expressing cells","INSTITUTE":"University of Minnesota","DEPARTMENT":"Masonic Cancer Center","LABORATORY":"Kelekar Lab","LAST_NAME":"Kelekar","FIRST_NAME":"Ameeta","ADDRESS":"420 Delaware Street SE,Minneapolis, MN 55455","EMAIL":"ameeta@umn.edu","PHONE":"612-626-2358","DOI":"http://dx.doi.org/10.21228/M85C7W"},

"STUDY":{"STUDY_TITLE":"Use of Aspartate Dehydrogenase by cancer cells","STUDY_SUMMARY":"The human acute lymphoblastic leukemia cell line (Jurkat) was used to isolate a clones based on Noxa expression. JP6 is low Noxa, JP3 is high Noxa. Furthermore, a Noxa expressing plasmid was tranfected and stable clones were selected for a Noxa high model (N5). 10E6 cells were starved of glucose (A) or glutamine (B&C) for 3 hours and then fed 13C 1,2 glucose (A), 15N alpha nitrogen glutamine (B) or 15N amide nitrogen glutamine (C) for 24 hours. Cells were washed 1X in ice cold PBS and resuspended in -20C methanol. Quenched cells were snap frozen and stored at -80. For experiment A we would like to observe the contribution of labeled glucose into the synthesis of amino acids, specifically glycine and serine. For experiment B we are most interested in the nitrogen incorporation into aspartate.  SCB edits: This fluxomics study requires measuring amino acids for M, M+1, M+2, and M+3 prioritizing glycine, serine, aspartate, asparagine, ornithine, citrulline, then as many as possible using a diamond hydride column and LCMS method (see CEvans).","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@umich.edu","PHONE":"-"},

"SUBJECT":{"SUBJECT_TYPE":"Human","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606","SPECIES_GROUP":"Human"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0011617",
"Sample ID":"S00017122",
"Factors":{"Type":"Noxa high clone","Treatment":"13C labeled glucose"}
},
{
"Subject ID":"SU0011617",
"Sample ID":"S00017123",
"Factors":{"Type":"Noxa high clone","Treatment":"13C labeled glucose"}
},
{
"Subject ID":"SU0011617",
"Sample ID":"S00017124",
"Factors":{"Type":"Noxa high clone","Treatment":"13C labeled glucose"}
},
{
"Subject ID":"SU0011617",
"Sample ID":"S00017131",
"Factors":{"Type":"Noxa high clone","Treatment":"15N alpha nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011617",
"Sample ID":"S00017132",
"Factors":{"Type":"Noxa high clone","Treatment":"15N alpha nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011617",
"Sample ID":"S00017133",
"Factors":{"Type":"Noxa high clone","Treatment":"15N alpha nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011617",
"Sample ID":"S00017140",
"Factors":{"Type":"Noxa high clone","Treatment":"15N amide nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011617",
"Sample ID":"S00017141",
"Factors":{"Type":"Noxa high clone","Treatment":"15N amide nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011617",
"Sample ID":"S00017142",
"Factors":{"Type":"Noxa high clone","Treatment":"15N amide nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011619",
"Sample ID":"S00017128",
"Factors":{"Type":"Noxa high plasmid","Treatment":"13C labeled glucose"}
},
{
"Subject ID":"SU0011619",
"Sample ID":"S00017129",
"Factors":{"Type":"Noxa high plasmid","Treatment":"13C labeled glucose"}
},
{
"Subject ID":"SU0011619",
"Sample ID":"S00017130",
"Factors":{"Type":"Noxa high plasmid","Treatment":"13C labeled glucose"}
},
{
"Subject ID":"SU0011619",
"Sample ID":"S00017137",
"Factors":{"Type":"Noxa high plasmid","Treatment":"15N alpha nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011619",
"Sample ID":"S00017138",
"Factors":{"Type":"Noxa high plasmid","Treatment":"15N alpha nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011619",
"Sample ID":"S00017139",
"Factors":{"Type":"Noxa high plasmid","Treatment":"15N alpha nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011619",
"Sample ID":"S00017146",
"Factors":{"Type":"Noxa high plasmid","Treatment":"15N amide nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011619",
"Sample ID":"S00017147",
"Factors":{"Type":"Noxa high plasmid","Treatment":"15N amide nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011619",
"Sample ID":"S00017148",
"Factors":{"Type":"Noxa high plasmid","Treatment":"15N amide nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011618",
"Sample ID":"S00017125",
"Factors":{"Type":"Noxa low clone","Treatment":"13C labeled glucose"}
},
{
"Subject ID":"SU0011618",
"Sample ID":"S00017126",
"Factors":{"Type":"Noxa low clone","Treatment":"13C labeled glucose"}
},
{
"Subject ID":"SU0011618",
"Sample ID":"S00017127",
"Factors":{"Type":"Noxa low clone","Treatment":"13C labeled glucose"}
},
{
"Subject ID":"SU0011618",
"Sample ID":"S00017134",
"Factors":{"Type":"Noxa low clone","Treatment":"15N alpha nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011618",
"Sample ID":"S00017135",
"Factors":{"Type":"Noxa low clone","Treatment":"15N alpha nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011618",
"Sample ID":"S00017136",
"Factors":{"Type":"Noxa low clone","Treatment":"15N alpha nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011618",
"Sample ID":"S00017143",
"Factors":{"Type":"Noxa low clone","Treatment":"15N amide nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011618",
"Sample ID":"S00017144",
"Factors":{"Type":"Noxa low clone","Treatment":"15N amide nitrogen labeled glutamine"}
},
{
"Subject ID":"SU0011618",
"Sample ID":"S00017145",
"Factors":{"Type":"Noxa low clone","Treatment":"15N amide nitrogen labeled glutamine"}
}
],
"COLLECTION":{"SAMPLE_TYPE":"Cell Extracts","COLLECTION_SUMMARY":"-"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_PROTOCOL_FILENAME":"Fluxomics_analysis_protocol-2015-03-11.docx","SAMPLEPREP_SUMMARY":"-"},

"CHROMATOGRAPHY":{"METHODS_ID":"AQM010","METHODS_FILENAME":"QTOF-002-HILIC-35min-1mm-No_Insert.m","INSTRUMENT_NAME":"Agilent 1260","COLUMN_NAME":"Phenomenex Luna NH2 (150 x 1mm, 3um)","CHROMATOGRAPHY_TYPE":"HILIC"},

"ANALYSIS":{"LABORATORY_NAME":"MRC2 (University of Michigan)","ANALYSIS_TYPE":"MS","ACQUISITION_PARAMETERS_FILE":"QTOF-002-HILIC-35min-1mm.m","PROCESSING_PARAMETERS_FILE":"EX00383-MassHunterQuant-DataAnalysis-Method.m"},

"MS":{"INSTRUMENT_NAME":"Agilent 6520 QTOF","INSTRUMENT_TYPE":"QTOF","MS_TYPE":"ESI","ION_MODE":"NEGATIVE","MS_COMMENTS":"LCMS"},

"MS_METABOLITE_DATA":{
"Units":"Area",

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