{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000203","ANALYSIS_ID":"AN000305","VERSION":"1","CREATED_ON":"2016-09-17"},

"PROJECT":{"PROJECT_TITLE":"Dietary emulsifying agents","PROJECT_SUMMARY":"SCFA and Bile acid composition in conventional and GermFree SW treated with","INSTITUTE":"Georgia State University","DEPARTMENT":"Biology","LABORATORY":"Gewirtz's Lab","LAST_NAME":"Gewirtz","FIRST_NAME":"Andrew","ADDRESS":"14 Marietta Street, NW  Atlanta, GA 30303-2813","EMAIL":"bchassaing@gsu.edu","PHONE":"404-413-3589"},

"STUDY":{"STUDY_TITLE":"Germfree vs Conventional SW Studies","STUDY_TYPE":"SCFA and Bile acid composition in conventional and GermFree SW treated with","STUDY_SUMMARY":"SCFA and Bile acid composition in conventional and GermFree SW treated with","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@umich.edu","PHONE":"-","NUM_GROUPS":"6","TOTAL_SUBJECTS":"66"},

"SUBJECT":{"SUBJECT_TYPE":"-","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10088"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0002961",
"Sample ID":"S00012778",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002962",
"Sample ID":"S00012779",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002963",
"Sample ID":"S00012780",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002964",
"Sample ID":"S00012781",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002961",
"Sample ID":"S00012782",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002962",
"Sample ID":"S00012783",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002963",
"Sample ID":"S00012784",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002964",
"Sample ID":"S00012785",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002961",
"Sample ID":"S00012811",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002962",
"Sample ID":"S00012812",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002963",
"Sample ID":"S00012813",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002964",
"Sample ID":"S00012814",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002961",
"Sample ID":"S00012815",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002962",
"Sample ID":"S00012816",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002963",
"Sample ID":"S00012817",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002964",
"Sample ID":"S00012818",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002947",
"Sample ID":"S00012764",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002948",
"Sample ID":"S00012765",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002949",
"Sample ID":"S00012766",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002950",
"Sample ID":"S00012767",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002947",
"Sample ID":"S00012797",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002948",
"Sample ID":"S00012798",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002949",
"Sample ID":"S00012799",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002950",
"Sample ID":"S00012800",
"Factors":{"treatment":"CMC","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002965",
"Sample ID":"S00012786",
"Factors":{"treatment":"P80","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002966",
"Sample ID":"S00012787",
"Factors":{"treatment":"P80","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002967",
"Sample ID":"S00012788",
"Factors":{"treatment":"P80","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002965",
"Sample ID":"S00012789",
"Factors":{"treatment":"P80","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002966",
"Sample ID":"S00012790",
"Factors":{"treatment":"P80","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002967",
"Sample ID":"S00012791",
"Factors":{"treatment":"P80","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002968",
"Sample ID":"S00012792",
"Factors":{"treatment":"P80","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002965",
"Sample ID":"S00012819",
"Factors":{"treatment":"P80","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002966",
"Sample ID":"S00012820",
"Factors":{"treatment":"P80","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002967",
"Sample ID":"S00012821",
"Factors":{"treatment":"P80","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002965",
"Sample ID":"S00012822",
"Factors":{"treatment":"P80","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002966",
"Sample ID":"S00012823",
"Factors":{"treatment":"P80","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002967",
"Sample ID":"S00012824",
"Factors":{"treatment":"P80","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002968",
"Sample ID":"S00012825",
"Factors":{"treatment":"P80","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002951",
"Sample ID":"S00012768",
"Factors":{"treatment":"P80","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002952",
"Sample ID":"S00012769",
"Factors":{"treatment":"P80","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002953",
"Sample ID":"S00012770",
"Factors":{"treatment":"P80","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002954",
"Sample ID":"S00012771",
"Factors":{"treatment":"P80","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002955",
"Sample ID":"S00012772",
"Factors":{"treatment":"P80","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002951",
"Sample ID":"S00012801",
"Factors":{"treatment":"P80","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002952",
"Sample ID":"S00012802",
"Factors":{"treatment":"P80","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002953",
"Sample ID":"S00012803",
"Factors":{"treatment":"P80","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002954",
"Sample ID":"S00012804",
"Factors":{"treatment":"P80","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002955",
"Sample ID":"S00012805",
"Factors":{"treatment":"P80","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002956",
"Sample ID":"S00012773",
"Factors":{"treatment":"Water","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002957",
"Sample ID":"S00012774",
"Factors":{"treatment":"Water","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002958",
"Sample ID":"S00012775",
"Factors":{"treatment":"Water","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002959",
"Sample ID":"S00012776",
"Factors":{"treatment":"Water","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002960",
"Sample ID":"S00012777",
"Factors":{"treatment":"Water","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002956",
"Sample ID":"S00012806",
"Factors":{"treatment":"Water","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002957",
"Sample ID":"S00012807",
"Factors":{"treatment":"Water","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002958",
"Sample ID":"S00012808",
"Factors":{"treatment":"Water","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002959",
"Sample ID":"S00012809",
"Factors":{"treatment":"Water","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002960",
"Sample ID":"S00012810",
"Factors":{"treatment":"Water","Germfree versus conventional":"Conventionaly raised animal"}
},
{
"Subject ID":"SU0002943",
"Sample ID":"S00012760",
"Factors":{"treatment":"Water","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002944",
"Sample ID":"S00012761",
"Factors":{"treatment":"Water","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002945",
"Sample ID":"S00012762",
"Factors":{"treatment":"Water","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002946",
"Sample ID":"S00012763",
"Factors":{"treatment":"Water","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002943",
"Sample ID":"S00012793",
"Factors":{"treatment":"Water","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002944",
"Sample ID":"S00012794",
"Factors":{"treatment":"Water","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002945",
"Sample ID":"S00012795",
"Factors":{"treatment":"Water","Germfree versus conventional":"Germfree animal"}
},
{
"Subject ID":"SU0002946",
"Sample ID":"S00012796",
"Factors":{"treatment":"Water","Germfree versus conventional":"Germfree animal"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-","SAMPLE_TYPE":"Face"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"SCFA_analysis_protocol-2015-03-10.docx"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"GC","INSTRUMENT_NAME":"-","COLUMN_NAME":"Phenomenex Zebron ZB-WAXplus (30m x 0.25mm, 0.25um)","METHODS_ID":"AQM030","METHODS_FILENAME":"WAXPLUS_100-200C_2_SIM.M.txt"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","LABORATORY_NAME":"MRC2 (University of Michigan)","ACQUISITION_PARAMETERS_FILE":"WAXPLUS_100-200C_2_SIM.M.txt","PROCESSING_PARAMETERS_FILE":"EX00249-SCFA-Quant-methods.m.zip"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 5975C","INSTRUMENT_TYPE":"Single quadrupole","MS_TYPE":"EI","ION_MODE":"POSITIVE"},

"MS_METABOLITE_DATA":{
"Units":"nmol/100 mg sample",

"Data":[{"Metabolite":"aceticacid","S00012778":"1346.8223","S00012779":"1022.3871","S00012780":"949.8515","S00012781":"13058.3380","S00012782":"1424.7855","S00012783":"1207.1084","S00012784":"1000.4478","S00012785":"844.5623","S00012764":"39.0354","S00012765":"46.5138","S00012766":"44.6433","S00012767":"50.1977","S00012786":"810.4288","S00012787":"1406.8209","S00012788":"1678.5301","S00012789":"8967.6542","S00012790":"1186.1367","S00012791":"1082.2192","S00012792":"930.9703","S00012768":"117.9421","S00012769":"45.0435","S00012770":"123.3776","S00012771":"106.0528","S00012772":"57.9366","S00012773":"1046.9955","S00012774":"1788.3109","S00012775":"1282.3848","S00012776":"1360.0637","S00012777":"1249.0189","S00012760":"159.9614","S00012761":"104.3115","S00012762":"117.9177","S00012763":"107.1703"},{"Metabolite":"butyricacid","S00012778":"1847.2783","S00012779":"212.7923","S00012780":"300.1077","S00012781":"411.8650","S00012782":"258.4784","S00012783":"341.2332","S00012784":"280.0551","S00012785":"341.2600","S00012764":"1.8814","S00012765":"1.0744","S00012766":"0.7711","S00012767":"0.8174","S00012786":"275.6099","S00012787":"570.4192","S00012788":"201.8696","S00012789":"236.2371","S00012790":"200.7351","S00012791":"285.3536","S00012792":"135.5877","S00012768":"1.2525","S00012769":"1.6810","S00012770":"2.4163","S00012771":"0.6584","S00012772":"1.0528","S00012773":"338.0550","S00012774":"1203.7039","S00012775":"477.9451","S00012776":"637.6386","S00012777":"280.9084","S00012760":"12.9076","S00012761":"4.6693","S00012762":"3.3070","S00012763":"2.2475"},{"Metabolite":"heptanoicacid","S00012778":"0.3803","S00012779":"0.0000","S00012780":"0.0911","S00012781":"0.0000","S00012782":"0.0931","S00012783":"0.1051","S00012784":"0.0821","S00012785":"0.1380","S00012764":"0.3327","S00012765":"0.4112","S00012766":"0.2875","S00012767":"0.1829","S00012786":"0.4674","S00012787":"0.2521","S00012788":"0.3872","S00012789":"0.4813","S00012790":"0.1901","S00012791":"0.1949","S00012792":"0.1474","S00012768":"0.3789","S00012769":"0.1943","S00012770":"0.0000","S00012771":"0.2943","S00012772":"0.0000","S00012773":"0.0000","S00012774":"0.1241","S00012775":"0.1382","S00012776":"0.1729","S00012777":"0.0000","S00012760":"0.5749","S00012761":"0.3354","S00012762":"0.4353","S00012763":"0.4031"},{"Metabolite":"hexanoicacid","S00012778":"4.3676","S00012779":"4.4263","S00012780":"3.3593","S00012781":"0.0000","S00012782":"4.2185","S00012783":"3.0758","S00012784":"3.2846","S00012785":"3.1645","S00012764":"4.0767","S00012765":"3.0896","S00012766":"2.9586","S00012767":"3.1229","S00012786":"6.7650","S00012787":"4.6047","S00012788":"9.6339","S00012789":"3.9225","S00012790":"4.3250","S00012791":"3.7898","S00012792":"3.9906","S00012768":"3.2575","S00012769":"2.6500","S00012770":"5.7169","S00012771":"3.1607","S00012772":"4.1110","S00012773":"3.8477","S00012774":"3.6273","S00012775":"3.7186","S00012776":"3.5318","S00012777":"5.3921","S00012760":"12.0519","S00012761":"3.3274","S00012762":"5.8762","S00012763":"5.8529"},{"Metabolite":"isovalericacid","S00012778":"87.8565","S00012779":"10.6906","S00012780":"18.8707","S00012781":"13.7207","S00012782":"30.6772","S00012783":"24.5380","S00012784":"28.3734","S00012785":"26.1540","S00012764":"0.5225","S00012765":"2.7920","S00012766":"2.3190","S00012767":"2.6704","S00012786":"9.9650","S00012787":"14.6708","S00012788":"18.6528","S00012789":"7.9391","S00012790":"6.7815","S00012791":"22.1060","S00012792":"25.0508","S00012768":"4.1340","S00012769":"0.3722","S00012770":"0.2996","S00012771":"2.9406","S00012772":"0.1386","S00012773":"20.6122","S00012774":"72.9744","S00012775":"29.3245","S00012776":"20.9310","S00012777":"6.6119","S00012760":"6.1937","S00012761":"1.9135","S00012762":"1.6758","S00012763":"0.4069"},{"Metabolite":"propionic acid","S00012778":"438.1590","S00012779":"249.5163","S00012780":"193.1218","S00012781":"867.9102","S00012782":"301.4272","S00012783":"351.5120","S00012784":"367.5920","S00012785":"386.5089","S00012764":"10.3097","S00012765":"6.0704","S00012766":"9.2675","S00012767":"7.5240","S00012786":"273.4653","S00012787":"331.6082","S00012788":"252.1256","S00012789":"473.2676","S00012790":"178.7126","S00012791":"225.0120","S00012792":"148.5658","S00012768":"9.2211","S00012769":"8.5329","S00012770":"17.8264","S00012771":"3.8545","S00012772":"10.1921","S00012773":"225.3408","S00012774":"670.6879","S00012775":"273.9458","S00012776":"364.0502","S00012777":"247.0180","S00012760":"33.8483","S00012761":"6.5752","S00012762":"14.9280","S00012763":"16.1517"},{"Metabolite":"valericacid","S00012778":"293.4189","S00012779":"22.7200","S00012780":"29.1926","S00012781":"21.7923","S00012782":"64.3145","S00012783":"102.1568","S00012784":"102.2539","S00012785":"112.8748","S00012764":"1.0890","S00012765":"0.5684","S00012766":"0.5541","S00012767":"0.3353","S00012786":"84.6017","S00012787":"62.0514","S00012788":"16.5688","S00012789":"12.3493","S00012790":"44.7362","S00012791":"77.3513","S00012792":"36.0238","S00012768":"1.1885","S00012769":"0.8587","S00012770":"1.0217","S00012771":"1.0762","S00012772":"0.4193","S00012773":"59.0515","S00012774":"364.3893","S00012775":"68.7853","S00012776":"95.1317","S00012777":"19.1401","S00012760":"6.7189","S00012761":"2.5674","S00012762":"2.1254","S00012763":"0.5669"}],

"Metabolites":[{"Metabolite":"aceticacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"176","inchi_key":"","kegg_id":"","other_id":"Acetate","other_id_type":"UM_Target_ID"},{"Metabolite":"butyricacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"20975673","inchi_key":"","kegg_id":"","other_id":"Butyrate","other_id_type":"UM_Target_ID"},{"Metabolite":"heptanoicacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"8094","inchi_key":"","kegg_id":"","other_id":"Heptanoate","other_id_type":"UM_Target_ID"},{"Metabolite":"hexanoicacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"8892","inchi_key":"","kegg_id":"","other_id":"Hexanoate","other_id_type":"UM_Target_ID"},{"Metabolite":"isovalericacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"10430","inchi_key":"","kegg_id":"","other_id":"Isovalerate","other_id_type":"UM_Target_ID"},{"Metabolite":"propionic acid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"1032","inchi_key":"","kegg_id":"","other_id":"Propionate","other_id_type":"UM_Target_ID"},{"Metabolite":"valericacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"7991","inchi_key":"","kegg_id":"","other_id":"Valerate","other_id_type":"UM_Target_ID"}]
}

}