{ "METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000206","ANALYSIS_ID":"AN000308","VERSION":"1","CREATED_ON":"2016-09-17"}, "PROJECT":{"PROJECT_TITLE":"Mice inoculation with human microbiota (AMY1)","PROJECT_SUMMARY":"Mice were inoculated with human microbiota","INSTITUTE":"Cornell University","DEPARTMENT":"Microbiology","LABORATORY":"Ley Lab","LAST_NAME":"Ley","FIRST_NAME":"Ruth","ADDRESS":"Ithaca, NY","EMAIL":"rel222@cornell.edu","PHONE":"607-255-4954"}, "STUDY":{"STUDY_TITLE":"Mice inoculation with human microbiota (AMY1.1SCFA)","STUDY_SUMMARY":"Hepatic portal plasma was collected from each mouse using lithium heparin as an","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@umich.edu","PHONE":"-","NUM_GROUPS":"19","TOTAL_SUBJECTS":"19"}, "SUBJECT":{"SUBJECT_TYPE":"-","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10088"}, "SUBJECT_SAMPLE_FACTORS":[ { "Subject ID":"SU0005031", "Sample ID":"S00016339", "Factors":{"AMY1group":"high"}, "Additional sample data":{"donor":"hs52"} }, { "Subject ID":"SU0005033", "Sample ID":"S00016341", "Factors":{"AMY1group":"high"}, "Additional sample data":{"donor":"hs55"} }, { "Subject ID":"SU0005035", "Sample ID":"S00016343", "Factors":{"AMY1group":"high"}, "Additional sample data":{"donor":"hs7"} }, { "Subject ID":"SU0005037", "Sample ID":"S00016345", "Factors":{"AMY1group":"high"}, "Additional sample data":{"donor":"hs8"} }, { "Subject ID":"SU0005039", "Sample ID":"S00016347", "Factors":{"AMY1group":"high"}, "Additional sample data":{"donor":"hs39"} }, { "Subject ID":"SU0005041", "Sample ID":"S00016349", "Factors":{"AMY1group":"high"}, "Additional sample data":{"donor":"hs2"} }, { "Subject ID":"SU0005043", "Sample ID":"S00016351", "Factors":{"AMY1group":"high"}, "Additional sample data":{"donor":"hs6"} }, { "Subject ID":"SU0005045", "Sample ID":"S00016353", "Factors":{"AMY1group":"high"}, "Additional sample data":{"donor":"hs64"} }, { "Subject ID":"SU0005047", "Sample ID":"S00016355", "Factors":{"AMY1group":"high"}, "Additional sample data":{"donor":"hs91,T6"} }, { "Subject ID":"SU0005048", "Sample ID":"S00016356", "Factors":{"AMY1group":"high"}, "Additional sample data":{"donor":"hs99"} }, { "Subject ID":"SU0005032", "Sample ID":"S00016340", "Factors":{"AMY1group":"low"}, "Additional sample data":{"donor":"hs36"} }, { "Subject ID":"SU0005034", "Sample ID":"S00016342", "Factors":{"AMY1group":"low"}, "Additional sample data":{"donor":"hs42"} }, { "Subject ID":"SU0005036", "Sample ID":"S00016344", "Factors":{"AMY1group":"low"}, "Additional sample data":{"donor":"hs69"} }, { "Subject ID":"SU0005038", "Sample ID":"S00016346", "Factors":{"AMY1group":"low"}, "Additional sample data":{"donor":"hs80"} }, { "Subject ID":"SU0005040", "Sample ID":"S00016348", "Factors":{"AMY1group":"low"}, "Additional sample data":{"donor":"hs90"} }, { "Subject ID":"SU0005042", "Sample ID":"S00016350", "Factors":{"AMY1group":"low"}, "Additional sample data":{"donor":"hs95"} }, { "Subject ID":"SU0005044", "Sample ID":"S00016352", "Factors":{"AMY1group":"low"}, "Additional sample data":{"donor":"hs97"} }, { "Subject ID":"SU0005046", "Sample ID":"S00016354", "Factors":{"AMY1group":"low"}, "Additional sample data":{"donor":"hs111"} }, { "Subject ID":"SU0005049", "Sample ID":"S00016357", "Factors":{"AMY1group":"low"}, "Additional sample data":{"donor":"hs88"} } ], "COLLECTION":{"COLLECTION_SUMMARY":"-","SAMPLE_TYPE":"Plasma"}, "TREATMENT":{"TREATMENT_SUMMARY":"-"}, "SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"SCFA_analysis_protocol-2015-03-10.docx"}, "CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"GC","INSTRUMENT_NAME":"-","COLUMN_NAME":"Phenomenex Zebron ZB-WAXplus (30m x 0.25mm, 0.25um)","METHODS_ID":"AQM030","METHODS_FILENAME":"WAXPLUS_100-200C_2_SIM.M.txt"}, "ANALYSIS":{"ANALYSIS_TYPE":"MS","LABORATORY_NAME":"MRC2 (University of Michigan)","ACQUISITION_PARAMETERS_FILE":"WAXPLUS_100-200C_2_SIM.M.txt","PROCESSING_PARAMETERS_FILE":"EX00356-SCFA-Quant-methods.m.zip"}, "MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 5975C","INSTRUMENT_TYPE":"Single quadrupole","MS_TYPE":"EI","ION_MODE":"POSITIVE"}, "MS_METABOLITE_DATA":{ "Units":"nmol", "Data":[{"Metabolite":"aceticacid","S00016339":"1334.1627","S00016341":"1060.5377","S00016343":"953.6201","S00016345":"448.5594","S00016347":"763.4184","S00016349":"488.5548","S00016351":"501.5996","S00016353":"372.1248","S00016355":"497.5759","S00016356":"1179.1020","S00016340":"530.7594","S00016342":"1334.1032","S00016344":"598.0370","S00016346":"562.2334","S00016348":"733.9232","S00016350":"627.6235","S00016352":"489.3023","S00016354":"1467.1386","S00016357":"621.1533"},{"Metabolite":"butyricacid","S00016339":"104.8002","S00016341":"25.4594","S00016343":"8.9424","S00016345":"4.1169","S00016347":"4.3667","S00016349":"4.3861","S00016351":"3.2821","S00016353":"6.1018","S00016355":"3.5572","S00016356":"279.9051","S00016340":"4.6243","S00016342":"7.0853","S00016344":"4.6201","S00016346":"5.0490","S00016348":"4.1970","S00016350":"4.5386","S00016352":"4.3695","S00016354":"18.1427","S00016357":"5.0058"},{"Metabolite":"heptanoicacid","S00016339":"2.0480","S00016341":"0.4439","S00016343":"0.6823","S00016345":"0.5254","S00016347":"0.7703","S00016349":"0.3877","S00016351":"0.4869","S00016353":"0.3024","S00016355":"0.3072","S00016356":"0.3740","S00016340":"0.4899","S00016342":"0.9720","S00016344":"0.3940","S00016346":"0.3206","S00016348":"0.6749","S00016350":"0.5090","S00016352":"0.4872","S00016354":"0.8499","S00016357":"0.3953"},{"Metabolite":"hexanoicacid","S00016339":"13.3035","S00016341":"5.6078","S00016343":"5.6496","S00016345":"2.8847","S00016347":"8.2161","S00016349":"4.4287","S00016351":"3.0141","S00016353":"2.4313","S00016355":"4.0931","S00016356":"5.3698","S00016340":"5.2182","S00016342":"5.9480","S00016344":"5.2471","S00016346":"5.2932","S00016348":"3.2538","S00016350":"4.6627","S00016352":"2.9198","S00016354":"7.6925","S00016357":"4.8594"},{"Metabolite":"iso-butyricacid","S00016339":"12.7722","S00016341":"3.0290","S00016343":"3.7187","S00016345":"1.2792","S00016347":"2.5544","S00016349":"1.0419","S00016351":"0.5368","S00016353":"0.9755","S00016355":"1.1007","S00016356":"10.7884","S00016340":"1.4526","S00016342":"3.1959","S00016344":"1.6077","S00016346":"1.6395","S00016348":"2.2441","S00016350":"1.3094","S00016352":"1.1967","S00016354":"3.4865","S00016357":"0.7519"},{"Metabolite":"isovalericacid","S00016339":"4.0184","S00016341":"0.7191","S00016343":"0.7047","S00016345":"0.2218","S00016347":"0.5999","S00016349":"0.5198","S00016351":"0.2231","S00016353":"0.1444","S00016355":"0.1570","S00016356":"4.3320","S00016340":"0.6177","S00016342":"0.4182","S00016344":"0.2682","S00016346":"0.2587","S00016348":"0.2247","S00016350":"0.2213","S00016352":"0.2543","S00016354":"0.9123","S00016357":"0.1983"},{"Metabolite":"propionic acid","S00016339":"328.9816","S00016341":"192.9039","S00016343":"23.5408","S00016345":"6.2853","S00016347":"15.9515","S00016349":"8.4806","S00016351":"10.8947","S00016353":"7.1110","S00016355":"11.7935","S00016356":"170.8520","S00016340":"12.3388","S00016342":"18.0864","S00016344":"13.3414","S00016346":"13.7941","S00016348":"14.7827","S00016350":"17.6133","S00016352":"11.8710","S00016354":"36.9106","S00016357":"18.5610"},{"Metabolite":"valericacid","S00016339":"37.3008","S00016341":"1.9938","S00016343":"2.6095","S00016345":"1.0151","S00016347":"1.3572","S00016349":"0.8491","S00016351":"0.8102","S00016353":"1.1515","S00016355":"0.7514","S00016356":"4.7606","S00016340":"1.5453","S00016342":"2.6685","S00016344":"0.7611","S00016346":"0.6583","S00016348":"1.2481","S00016350":"1.0514","S00016352":"1.1539","S00016354":"2.3146","S00016357":"0.8785"}], "Metabolites":[{"Metabolite":"aceticacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"176","inchi_key":"","kegg_id":"","other_id":"Acetate","other_id_type":"UM_Target_ID"},{"Metabolite":"butyricacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"20975673","inchi_key":"","kegg_id":"","other_id":"Butyrate","other_id_type":"UM_Target_ID"},{"Metabolite":"heptanoicacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"8094","inchi_key":"","kegg_id":"","other_id":"Heptanoate","other_id_type":"UM_Target_ID"},{"Metabolite":"hexanoicacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"8892","inchi_key":"","kegg_id":"","other_id":"Hexanoate","other_id_type":"UM_Target_ID"},{"Metabolite":"iso-butyricacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"6590","inchi_key":"","kegg_id":"","other_id":"iso-butyrate","other_id_type":"UM_Target_ID"},{"Metabolite":"isovalericacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"10430","inchi_key":"","kegg_id":"","other_id":"Isovalerate","other_id_type":"UM_Target_ID"},{"Metabolite":"propionic acid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"1032","inchi_key":"","kegg_id":"","other_id":"Propionate","other_id_type":"UM_Target_ID"},{"Metabolite":"valericacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"7991","inchi_key":"","kegg_id":"","other_id":"Valerate","other_id_type":"UM_Target_ID"}] } }