{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000207","ANALYSIS_ID":"AN000309","VERSION":"1","CREATED_ON":"2016-09-17"},

"PROJECT":{"PROJECT_TITLE":"Mice inoculation with human microbiota (AMY1)","PROJECT_SUMMARY":"Mice were inoculated with human microbiota","INSTITUTE":"Cornell University","DEPARTMENT":"Microbiology","LABORATORY":"Ley Lab","LAST_NAME":"Ley","FIRST_NAME":"Ruth","ADDRESS":"Ithaca, NY","EMAIL":"rel222@cornell.edu","PHONE":"607-255-4954"},

"STUDY":{"STUDY_TITLE":"Mice inoculation with human microbiota (MouseAMY1.1SCFA.Cecal)","STUDY_SUMMARY":"Cecal contents were collected and frozen at -80. Aliquots were made on dry ice then aliquots were stored at -80 until shipment on dry ice.","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@umich.edu","PHONE":"-","NUM_GROUPS":"19","TOTAL_SUBJECTS":"19"},

"SUBJECT":{"SUBJECT_TYPE":"-","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10088"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0005050",
"Sample ID":"S00016358",
"Factors":{"AMY1group":"high"},
"Additional sample data":{"donor":"hs52"}
},
{
"Subject ID":"SU0005052",
"Sample ID":"S00016360",
"Factors":{"AMY1group":"high"},
"Additional sample data":{"donor":"hs55"}
},
{
"Subject ID":"SU0005054",
"Sample ID":"S00016362",
"Factors":{"AMY1group":"high"},
"Additional sample data":{"donor":"hs7"}
},
{
"Subject ID":"SU0005056",
"Sample ID":"S00016364",
"Factors":{"AMY1group":"high"},
"Additional sample data":{"donor":"hs8"}
},
{
"Subject ID":"SU0005058",
"Sample ID":"S00016366",
"Factors":{"AMY1group":"high"},
"Additional sample data":{"donor":"hs39"}
},
{
"Subject ID":"SU0005060",
"Sample ID":"S00016368",
"Factors":{"AMY1group":"high"},
"Additional sample data":{"donor":"hs2"}
},
{
"Subject ID":"SU0005062",
"Sample ID":"S00016370",
"Factors":{"AMY1group":"high"},
"Additional sample data":{"donor":"hs6"}
},
{
"Subject ID":"SU0005064",
"Sample ID":"S00016372",
"Factors":{"AMY1group":"high"},
"Additional sample data":{"donor":"hs64"}
},
{
"Subject ID":"SU0005066",
"Sample ID":"S00016374",
"Factors":{"AMY1group":"high"},
"Additional sample data":{"donor":"hs91,T6"}
},
{
"Subject ID":"SU0005067",
"Sample ID":"S00016375",
"Factors":{"AMY1group":"high"},
"Additional sample data":{"donor":"hs99"}
},
{
"Subject ID":"SU0005051",
"Sample ID":"S00016359",
"Factors":{"AMY1group":"low"},
"Additional sample data":{"donor":"hs36"}
},
{
"Subject ID":"SU0005053",
"Sample ID":"S00016361",
"Factors":{"AMY1group":"low"},
"Additional sample data":{"donor":"hs42"}
},
{
"Subject ID":"SU0005055",
"Sample ID":"S00016363",
"Factors":{"AMY1group":"low"},
"Additional sample data":{"donor":"hs69"}
},
{
"Subject ID":"SU0005057",
"Sample ID":"S00016365",
"Factors":{"AMY1group":"low"},
"Additional sample data":{"donor":"hs80"}
},
{
"Subject ID":"SU0005059",
"Sample ID":"S00016367",
"Factors":{"AMY1group":"low"},
"Additional sample data":{"donor":"hs90"}
},
{
"Subject ID":"SU0005061",
"Sample ID":"S00016369",
"Factors":{"AMY1group":"low"},
"Additional sample data":{"donor":"hs95"}
},
{
"Subject ID":"SU0005063",
"Sample ID":"S00016371",
"Factors":{"AMY1group":"low"},
"Additional sample data":{"donor":"hs97"}
},
{
"Subject ID":"SU0005065",
"Sample ID":"S00016373",
"Factors":{"AMY1group":"low"},
"Additional sample data":{"donor":"hs111"}
},
{
"Subject ID":"SU0005068",
"Sample ID":"S00016376",
"Factors":{"AMY1group":"low"},
"Additional sample data":{"donor":"hs88"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-","SAMPLE_TYPE":"Cecum"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"SCFA_analysis_protocol-2015-03-10.docx"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"GC","INSTRUMENT_NAME":"-","COLUMN_NAME":"Phenomenex Zebron ZB-WAXplus (30m x 0.25mm, 0.25um)","METHODS_ID":"AQM030","METHODS_FILENAME":"WAXPLUS_100-200C_2_SIM.M.txt"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","LABORATORY_NAME":"MRC2 (University of Michigan)","ACQUISITION_PARAMETERS_FILE":"WAXPLUS_100-200C_2_SIM.M.txt","PROCESSING_PARAMETERS_FILE":"EX00357-SCFA-Quant-methods.m.zip"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 5975C","INSTRUMENT_TYPE":"Single quadrupole","MS_TYPE":"EI","ION_MODE":"POSITIVE"},

"MS_METABOLITE_DATA":{
"Units":"pmol/mg sample",

"Data":[{"Metabolite":"aceticacid","S00016358":"38.6111","S00016360":"182.4467","S00016362":"161.5278","S00016364":"124.4721","S00016366":"84.9619","S00016368":"53.6529","S00016370":"58.5291","S00016372":"77.7047","S00016374":"145.0406","S00016375":"122.0978","S00016359":"55.4854","S00016361":"137.8649","S00016363":"136.3328","S00016365":"146.3568","S00016367":"101.4954","S00016369":"222.2087","S00016371":"48.1975","S00016373":"157.6527","S00016376":"132.1501"},{"Metabolite":"butyricacid","S00016358":"3.1621","S00016360":"0.0000","S00016362":"6.0033","S00016364":"6.1113","S00016366":"2.3617","S00016368":"37.8407","S00016370":"0.0000","S00016372":"51.0041","S00016374":"0.0000","S00016375":"80.1870","S00016359":"0.0000","S00016361":"14.6917","S00016363":"0.0000","S00016365":"2.7172","S00016367":"0.0000","S00016369":"2.4146","S00016371":"7.6726","S00016373":"24.5764","S00016376":"2.3227"},{"Metabolite":"heptanoicacid","S00016358":"0.1883","S00016360":"0.2481","S00016362":"0.1906","S00016364":"0.1250","S00016366":"0.1120","S00016368":"0.0935","S00016370":"0.0843","S00016372":"0.0000","S00016374":"0.1371","S00016375":"0.1345","S00016359":"0.1840","S00016361":"0.1178","S00016363":"0.1388","S00016365":"0.1467","S00016367":"0.1200","S00016369":"0.1627","S00016371":"0.2030","S00016373":"0.1073","S00016376":"0.1301"},{"Metabolite":"hexanoicacid","S00016358":"0.0000","S00016360":"0.0000","S00016362":"0.0000","S00016364":"0.0000","S00016366":"0.0000","S00016368":"0.0000","S00016370":"3.1525","S00016372":"4.8525","S00016374":"5.3562","S00016375":"5.3041","S00016359":"0.0000","S00016361":"0.0000","S00016363":"0.0000","S00016365":"0.0000","S00016367":"0.0000","S00016369":"6.1532","S00016371":"0.0000","S00016373":"4.1820","S00016376":"5.2678"},{"Metabolite":"iso-butyricacid","S00016358":"0.8252","S00016360":"0.5060","S00016362":"1.6907","S00016364":"2.2616","S00016366":"2.8569","S00016368":"1.5799","S00016370":"0.5784","S00016372":"1.7938","S00016374":"0.9318","S00016375":"2.3941","S00016359":"2.4363","S00016361":"2.6642","S00016363":"0.3394","S00016365":"1.0633","S00016367":"1.0598","S00016369":"1.7777","S00016371":"1.9996","S00016373":"1.3326","S00016376":"1.0839"},{"Metabolite":"isovalericacid","S00016358":"0.0000","S00016360":"0.0000","S00016362":"0.0000","S00016364":"0.0000","S00016366":"0.0000","S00016368":"0.0000","S00016370":"0.0000","S00016372":"0.0000","S00016374":"0.0000","S00016375":"0.0000","S00016359":"0.0000","S00016361":"0.0000","S00016363":"0.0000","S00016365":"0.0000","S00016367":"0.0000","S00016369":"0.0000","S00016371":"0.0000","S00016373":"0.0000","S00016376":"0.0000"},{"Metabolite":"propionic acid","S00016358":"19.3391","S00016360":"75.8303","S00016362":"32.6141","S00016364":"32.9506","S00016366":"35.7320","S00016368":"30.2458","S00016370":"32.9622","S00016372":"24.1464","S00016374":"61.1532","S00016375":"32.5015","S00016359":"17.1462","S00016361":"36.1480","S00016363":"20.9992","S00016365":"41.6478","S00016367":"70.0322","S00016369":"88.8808","S00016371":"23.5358","S00016373":"25.3238","S00016376":"41.0629"},{"Metabolite":"valericacid","S00016358":"2.4366","S00016360":"0.0000","S00016362":"1.9966","S00016364":"4.2522","S00016366":"0.0000","S00016368":"4.6847","S00016370":"4.7057","S00016372":"3.0494","S00016374":"0.0000","S00016375":"0.0000","S00016359":"0.5377","S00016361":"6.9706","S00016363":"0.0000","S00016365":"0.0000","S00016367":"0.0000","S00016369":"0.0000","S00016371":"4.6901","S00016373":"0.0000","S00016376":"0.0000"}],

"Metabolites":[{"Metabolite":"aceticacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"176","inchi_key":"","kegg_id":"","other_id":"Acetate","other_id_type":"UM_Target_ID"},{"Metabolite":"butyricacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"20975673","inchi_key":"","kegg_id":"","other_id":"Butyrate","other_id_type":"UM_Target_ID"},{"Metabolite":"heptanoicacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"8094","inchi_key":"","kegg_id":"","other_id":"Heptanoate","other_id_type":"UM_Target_ID"},{"Metabolite":"hexanoicacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"8892","inchi_key":"","kegg_id":"","other_id":"Hexanoate","other_id_type":"UM_Target_ID"},{"Metabolite":"iso-butyricacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"6590","inchi_key":"","kegg_id":"","other_id":"iso-butyrate","other_id_type":"UM_Target_ID"},{"Metabolite":"isovalericacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"10430","inchi_key":"","kegg_id":"","other_id":"Isovalerate","other_id_type":"UM_Target_ID"},{"Metabolite":"propionic acid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"1032","inchi_key":"","kegg_id":"","other_id":"Propionate","other_id_type":"UM_Target_ID"},{"Metabolite":"valericacid","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"7991","inchi_key":"","kegg_id":"","other_id":"Valerate","other_id_type":"UM_Target_ID"}]
}

}