{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000282","ANALYSIS_ID":"AN000449","VERSION":"1","CREATED_ON":"01-15-2019"},

"PROJECT":{"PROJECT_TITLE":"13C mass isotopomer analysis","PROJECT_SUMMARY":"Pilot studies before designing future experiments","INSTITUTE":"University of Michigan","DEPARTMENT":"Internal Medicine","LABORATORY":"Merajver Lab","LAST_NAME":"Merajver","FIRST_NAME":"Sophia","ADDRESS":"University Michigan, 2900 Huron Parkway, Ann Arbor, MI 48105","EMAIL":"smerajve@med.umich.edu","PHONE":"(734)936-6884","DOI":"http://dx.doi.org/10.21228/M8K599"},

"STUDY":{"STUDY_TITLE":"Pilot Study 13C flux effects when RhoC or RhoA perturbed (13C BCs)","STUDY_TYPE":"13C mass isotopomer analysis (flux studies)","STUDY_SUMMARY":"Rho-GTPases are small GTP-binding proteins that contribute to the epithelial-to-mesenchymal transition by regulating several cellular processes including organization of the actin cytoskeleton, cell motility, transcription, and cell proliferation. Overexpression of RhoC-GTPases (RhoC) in breast cancer has been implicated in poor disease prognosis due to increased cancer cells invasion, migration, and motility, which warranted its consideration as a therapeutic target for inhibiting breast cancer metastasis. Using silencing RNA (siRNA) molecules to knockdown RhoC expression is a promising approach to inhibit breast cancer metastases.","INSTITUTE":"University of Michigan","DEPARTMENT":"Internal Medicine","LABORATORY":"Merajver Lab","LAST_NAME":"Wynn","FIRST_NAME":"Michelle","ADDRESS":"University Michigan, 2900 Huron Parkway, Ann Arbor, MI 48105","EMAIL":"mlwynn@umich.edu","PHONE":"734-647-3408"},

"SUBJECT":{"SUBJECT_TYPE":"Human","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606","SPECIES_GROUP":"Human"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"-",
"Sample ID":"S00017282",
"Factors":{"Cell line":"MCF10A ","13C Label":"Glutamine","RhoC overexpression":"no","RhoA knockdown":"no","RhoC knockdown":"no","RhoC drug":"no"}
},
{
"Subject ID":"-",
"Sample ID":"S00017283",
"Factors":{"Cell line":"MCF10A ","13C Label":"Glutamine","RhoC overexpression":"yes","RhoA knockdown":"no","RhoC knockdown":"no","RhoC drug":"no"}
},
{
"Subject ID":"-",
"Sample ID":"S00017284",
"Factors":{"Cell line":"MDA-MB-231","13C Label":"Glutamine","RhoC overexpression":"no","RhoA knockdown":"no","RhoC knockdown":"no","RhoC drug":"no"}
},
{
"Subject ID":"-",
"Sample ID":"S00017287",
"Factors":{"Cell line":"MDA-MB-231","13C Label":"Glutamine","RhoC overexpression":"no","RhoA knockdown":"no","RhoC knockdown":"no","RhoC drug":"yes"}
},
{
"Subject ID":"-",
"Sample ID":"S00017286",
"Factors":{"Cell line":"MDA-MB-231","13C Label":"Glutamine","RhoC overexpression":"no","RhoA knockdown":"no","RhoC knockdown":"yes","RhoC drug":"no"}
},
{
"Subject ID":"-",
"Sample ID":"S00017285",
"Factors":{"Cell line":"MDA-MB-231","13C Label":"Glutamine","RhoC overexpression":"no","RhoA knockdown":"yes","RhoC knockdown":"no","RhoC drug":"no"}
},
{
"Subject ID":"-",
"Sample ID":"S00017293",
"Factors":{"Cell line":"SUM149","13C Label":"Glucose","RhoC overexpression":"no","RhoA knockdown":"no","RhoC knockdown":"no","RhoC drug":"no"}
},
{
"Subject ID":"-",
"Sample ID":"S00017295",
"Factors":{"Cell line":"SUM149","13C Label":"Glucose","RhoC overexpression":"no","RhoA knockdown":"no","RhoC knockdown":"no","RhoC drug":"no"}
},
{
"Subject ID":"-",
"Sample ID":"S00017294",
"Factors":{"Cell line":"SUM149","13C Label":"Glucose","RhoC overexpression":"no","RhoA knockdown":"no","RhoC knockdown":"no","RhoC drug":"yes"}
},
{
"Subject ID":"-",
"Sample ID":"S00017288",
"Factors":{"Cell line":"SUM149","13C Label":"Glutamine","RhoC overexpression":"no","RhoA knockdown":"no","RhoC knockdown":"no","RhoC drug":"no"}
},
{
"Subject ID":"-",
"Sample ID":"S00017290",
"Factors":{"Cell line":"SUM149","13C Label":"Glutamine","RhoC overexpression":"no","RhoA knockdown":"no","RhoC knockdown":"no","RhoC drug":"no"}
},
{
"Subject ID":"-",
"Sample ID":"S00017289",
"Factors":{"Cell line":"SUM149","13C Label":"Glutamine","RhoC overexpression":"no","RhoA knockdown":"no","RhoC knockdown":"no","RhoC drug":"yes"}
},
{
"Subject ID":"-",
"Sample ID":"S00017296",
"Factors":{"Cell line":"SUM190","13C Label":"Glucose","RhoC overexpression":"no","RhoA knockdown":"no","RhoC knockdown":"no","RhoC drug":"no"}
},
{
"Subject ID":"-",
"Sample ID":"S00017297",
"Factors":{"Cell line":"SUM190","13C Label":"Glucose","RhoC overexpression":"no","RhoA knockdown":"no","RhoC knockdown":"yes","RhoC drug":"no"}
},
{
"Subject ID":"-",
"Sample ID":"S00017291",
"Factors":{"Cell line":"SUM190","13C Label":"Glutamine","RhoC overexpression":"no","RhoA knockdown":"no","RhoC knockdown":"no","RhoC drug":"no"}
},
{
"Subject ID":"-",
"Sample ID":"S00017292",
"Factors":{"Cell line":"SUM190","13C Label":"Glutamine","RhoC overexpression":"no","RhoA knockdown":"no","RhoC knockdown":"yes","RhoC drug":"no"}
}
],
"COLLECTION":{"SAMPLE_TYPE":"Cell Line","COLLECTION_SUMMARY":"-"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_PROTOCOL_FILENAME":"Fluxomics_analysis_protocol-2015-03-11.docx","SAMPLEPREP_SUMMARY":"-"},

"CHROMATOGRAPHY":{"METHODS_ID":"AQM010","METHODS_FILENAME":"QTOF-002-HILIC-35min-1mm.m.zip","INSTRUMENT_NAME":"Agilent 1260","COLUMN_NAME":"Phenomenex Luna NH2 (150 x 1mm, 3um)","CHROMATOGRAPHY_TYPE":"HILIC"},

"ANALYSIS":{"LABORATORY_NAME":"MRC2 (University of Michigan)","ANALYSIS_TYPE":"MS","ACQUISITION_PARAMETERS_FILE":"QTOF-002-HILIC-35min-1mm.m.zip","PROCESSING_PARAMETERS_FILE":"EX00403-flux-MassHunterQuant-GlyTCA-DataAnalysis-LCMS-Method.m.zip"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 6530 QTOF","INSTRUMENT_TYPE":"QTOF","MS_TYPE":"ESI","ION_MODE":"NEGATIVE"},

"MS_METABOLITE_DATA":{
"Units":"Area",

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