{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000582","ANALYSIS_ID":"AN000893","VERSION":"1","CREATED_ON":"April 6, 2017, 12:44 pm"},

"PROJECT":{"PROJECT_TITLE":"Phosphotidylcholine Analysis of Aqueous Humor and Trabecular Meshwork of DBA/2J mice","PROJECT_SUMMARY":"Compared phosphatidylcholine(PC) profiles within aqueous humor (AH) and trabecular meshwork (TM) of normotensive and hypertensive DBA/2J mice using direct infusion triple quadrupole mass spectrometry.","INSTITUTE":"University of Miami","LAST_NAME":"Bhattacharya","FIRST_NAME":"Sanjoy","ADDRESS":"McKnight Vision Research Building, Bascom Palmer Eye Institute, University of Miami Miller School of Medicine, 1638 NW 10th Avenue, Room 706A, Miami, Florida 33136","EMAIL":"Sbhattacharya@med.miami.edu","PHONE":"305-482-4103"},

"STUDY":{"STUDY_TITLE":"DBA2J Phospholipid Analysis","STUDY_SUMMARY":"AH and TM samples were obtained from young-normotensive DBA/2J (3 and 7.5 months) and old-hypertensive DBA/2J mice (8-8.5, 10 and 12 month). Lipids were extracted using modified Bligh and Dyer method and subjected to mass spectrometric identification using appropriate class-specific lipid standards and ratiometric quantification. Corresponding aqueous phase (of extraction) protein concentrations were measured using Bradford method.","INSTITUTE":"University of Miami","LAST_NAME":"Bhattacharya","FIRST_NAME":"Sanjoy","ADDRESS":"McKnight Vision Research Building, Bascom Palmer Eye Institute, University of Miami Miller School of Medicine, 1638 NW 10th Avenue, Room 706A, Miami, Florida 33136","EMAIL":"SBhattacharya@med.miami.edu","PHONE":"305-482-4103"},

"SUBJECT":{"SUBJECT_TYPE":"Animal","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090","GENOTYPE_STRAIN":"DBA/2J"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"-",
"Sample ID":"DBA2J 3M FTML4",
"Factors":{"Tissue Location":"TM","Sex":"Female","Phenotype":"Normotensive"},
"Additional sample data":{"Age (months)":"3","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 7.5M FTML3",
"Factors":{"Tissue Location":"TM","Sex":"Female","Phenotype":"Normotensive"},
"Additional sample data":{"Age (months)":"7.5","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 8-8.5M FTML2",
"Factors":{"Tissue Location":"TM","Sex":"Female","Phenotype":"Hypertensive"},
"Additional sample data":{"Age (months)":"8-8.5","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 10M FTML3",
"Factors":{"Tissue Location":"TM","Sex":"Female","Phenotype":"Hypertensive"},
"Additional sample data":{"Age (months)":"10","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 12M FTML1",
"Factors":{"Tissue Location":"TM","Sex":"Female","Phenotype":"Hypertensive"},
"Additional sample data":{"Age (months)":"12","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 7.5M MTM2L1",
"Factors":{"Tissue Location":"TM","Sex":"Male","Phenotype":"Normotensive"},
"Additional sample data":{"Age (months)":"7.5","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 8-8.5M MTM3L3",
"Factors":{"Tissue Location":"TM","Sex":"Male","Phenotype":"Hypertensive"},
"Additional sample data":{"Age (months)":"8-8.5","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 10M MTML3",
"Factors":{"Tissue Location":"TM","Sex":"Male","Phenotype":"Hypertensive"},
"Additional sample data":{"Age (months)":"10","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 12M MTML1",
"Factors":{"Tissue Location":"TM","Sex":"Male","Phenotype":"Hypertensive"},
"Additional sample data":{"Age (months)":"12","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 3M MTML1",
"Factors":{"Tissue Location":"TM","Sex":"Male","Phenotype":"Normotensive"},
"Additional sample data":{"Age (months)":"3","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 3M FAHL1",
"Factors":{"Tissue Location":"AH","Sex":"Female","Phenotype":"Normotensive"},
"Additional sample data":{"Age (months)":"3","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 7.5M FAHL4",
"Factors":{"Tissue Location":"AH","Sex":"Female","Phenotype":"Normotensive"},
"Additional sample data":{"Age (months)":"7.5","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 8-8.5M FAH4L3",
"Factors":{"Tissue Location":"AH","Sex":"Female","Phenotype":"Hypertensive"},
"Additional sample data":{"Age (months)":"8-8.5","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 10M FAHL4",
"Factors":{"Tissue Location":"AH","Sex":"Female","Phenotype":"Hypertensive"},
"Additional sample data":{"Age (months)":"10","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 12M FAHL1",
"Factors":{"Tissue Location":"AH","Sex":"Female","Phenotype":"Hypertensive"},
"Additional sample data":{"Age (months)":"12","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 3M MAHL1",
"Factors":{"Tissue Location":"AH","Sex":"Male","Phenotype":"Normotensive"},
"Additional sample data":{"Age (months)":"3","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 7.5M MAH2L1",
"Factors":{"Tissue Location":"AH","Sex":"Male","Phenotype":"Normotensive"},
"Additional sample data":{"Age (months)":"7.5","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 8-8.5M MAH4L3",
"Factors":{"Tissue Location":"AH","Sex":"Male","Phenotype":"Hypertensive"},
"Additional sample data":{"Age (months)":"8-8.5","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 10 MAHL3",
"Factors":{"Tissue Location":"AH","Sex":"Male","Phenotype":"Hypertensive"},
"Additional sample data":{"Age (months)":"10","Lipid Class":"PC"}
},
{
"Subject ID":"-",
"Sample ID":"DBA2J 12M MAHL1",
"Factors":{"Tissue Location":"AH","Sex":"Male","Phenotype":"Hypertensive"},
"Additional sample data":{"Age (months)":"12","Lipid Class":"PC"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"DBA/2J mice were anesthetized by an intraperitoneal injection of a cocktail of Ketamine and Xylazine. A drop of tetracaine hydrochloride ophthalmic solution (0.5%, Bausch & Lomb, USA) was used to anesthetize the ocular surface prior to AH procurement. Normotensive and hypertensive AH was obtained from the anterior chamber of DBA/2J mice via paracentesis using a syringe (catalog no. 7635-01 Hamilton, Reno, Nevada) with a small 33 gauge removable needle (701RN, catalog no. 7803-05 Hamilton). TM samples were obtained through surgical removal after euthanization with carbon dioxide and adhering to animal procedures approved by the IACUC."},

"TREATMENT":{"TREATMENT_SUMMARY":"No treatment was performed on the mice."},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"A total of ~3 μl of AH and ∼0.5-1 mm3 of TM per mice was used for phospholipid extraction using modified Bligh and Dyer extraction method[13,14]. Phospholipids extracted in the lower organic phase were dried using a Speed-Vac (Model 7810014; Labconco, Kansas City, MO), and then flushed with argon gas for oxidation prevention. Proteins procured from the upper aqueous phase were quantified using a suitable modification of Bradford’s method."},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"TSQ Quantum Access Max","COLUMN_NAME":"None"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Thermo Quantiva Access Max","INSTRUMENT_TYPE":"Triple quadrupole","MS_TYPE":"ESI","ION_MODE":"POSITIVE"},

"MS_METABOLITE_DATA":{
"Units":"pmol/ ug of protein",

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