{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000728","ANALYSIS_ID":"AN001141","VERSION":"1","CREATED_ON":"July 3, 2017, 10:38 am"},

"PROJECT":{"PROJECT_TITLE":"Antibiotic treatments and Breast Cancer","PROJECT_TYPE":"MS analysis","PROJECT_SUMMARY":"Breast cancer model mouse have gone through bariatric surgery and antibiotics treatments.","INSTITUTE":"University of Michigan","DEPARTMENT":"Surgery","LABORATORY":"Seeley Lab","LAST_NAME":"Seeley","FIRST_NAME":"Randy","ADDRESS":"Ann Arbor, MI","EMAIL":"seeleyrj@umich.edu","PHONE":"734-615-2880"},

"STUDY":{"STUDY_TITLE":"Effects of bariatric and antibiotic treatment surgery on mammary carcinogenesis","STUDY_TYPE":"MS analysis","STUDY_SUMMARY":"The purpose of this study is to understand the effects of bariatric surgery on mammary carcinogenesis in C3 Tag (1) mouse model. My animals have gone through antibiotic treatments in drinking water vs. no abx in their water. Also animals have been though vertical sleeve gasteroctomy (VSG) vs sham surgery vs no surgery group. It is expected that these surgeries will affect the tumor proliferation and growth. One potential explanation can be the changes of SCFAs following the bariatric surgery.","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@med.umich.edu","PHONE":"(734) 232-8175","NUM_GROUPS":"5","TOTAL_SUBJECTS":"36"},

"SUBJECT":{"SUBJECT_TYPE":"Mouse","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0015748",
"Sample ID":"S00024574",
"Factors":{"Antibiotic":"yes","Surgery":"SHAM"}
},
{
"Subject ID":"SU0015749",
"Sample ID":"S00024575",
"Factors":{"Antibiotic":"yes","Surgery":"SHAM"}
},
{
"Subject ID":"SU0015750",
"Sample ID":"S00024576",
"Factors":{"Antibiotic":"yes","Surgery":"SHAM"}
},
{
"Subject ID":"SU0015751",
"Sample ID":"S00024577",
"Factors":{"Antibiotic":"yes","Surgery":"SHAM"}
},
{
"Subject ID":"SU0015752",
"Sample ID":"S00024578",
"Factors":{"Antibiotic":"yes","Surgery":"SHAM"}
},
{
"Subject ID":"SU0015753",
"Sample ID":"S00024579",
"Factors":{"Antibiotic":"yes","Surgery":"SHAM"}
},
{
"Subject ID":"SU0015754",
"Sample ID":"S00024580",
"Factors":{"Antibiotic":"yes","Surgery":"VSG"}
},
{
"Subject ID":"SU0015755",
"Sample ID":"S00024581",
"Factors":{"Antibiotic":"yes","Surgery":"VSG"}
},
{
"Subject ID":"SU0015756",
"Sample ID":"S00024582",
"Factors":{"Antibiotic":"yes","Surgery":"VSG"}
},
{
"Subject ID":"SU0015757",
"Sample ID":"S00024583",
"Factors":{"Antibiotic":"yes","Surgery":"VSG"}
},
{
"Subject ID":"SU0015758",
"Sample ID":"S00024584",
"Factors":{"Antibiotic":"yes","Surgery":"VSG"}
},
{
"Subject ID":"SU0015759",
"Sample ID":"S00024585",
"Factors":{"Antibiotic":"yes","Surgery":"VSG"}
},
{
"Subject ID":"SU0015760",
"Sample ID":"S00024586",
"Factors":{"Antibiotic":"yes","Surgery":"VSG"}
},
{
"Subject ID":"SU0015761",
"Sample ID":"S00024587",
"Factors":{"Antibiotic":"yes","Surgery":"NONE"}
},
{
"Subject ID":"SU0015762",
"Sample ID":"S00024588",
"Factors":{"Antibiotic":"yes","Surgery":"NONE"}
},
{
"Subject ID":"SU0015763",
"Sample ID":"S00024589",
"Factors":{"Antibiotic":"yes","Surgery":"NONE"}
},
{
"Subject ID":"SU0015764",
"Sample ID":"S00024590",
"Factors":{"Antibiotic":"yes","Surgery":"NONE"}
},
{
"Subject ID":"SU0015765",
"Sample ID":"S00024591",
"Factors":{"Antibiotic":"yes","Surgery":"NONE"}
},
{
"Subject ID":"SU0015766",
"Sample ID":"S00024592",
"Factors":{"Antibiotic":"yes","Surgery":"NONE"}
},
{
"Subject ID":"SU0015767",
"Sample ID":"S00024593",
"Factors":{"Antibiotic":"no","Surgery":"SHAM"}
},
{
"Subject ID":"SU0015768",
"Sample ID":"S00024594",
"Factors":{"Antibiotic":"no","Surgery":"SHAM"}
},
{
"Subject ID":"SU0015769",
"Sample ID":"S00024595",
"Factors":{"Antibiotic":"no","Surgery":"SHAM"}
},
{
"Subject ID":"SU0015770",
"Sample ID":"S00024596",
"Factors":{"Antibiotic":"no","Surgery":"SHAM"}
},
{
"Subject ID":"SU0015771",
"Sample ID":"S00024597",
"Factors":{"Antibiotic":"no","Surgery":"SHAM"}
},
{
"Subject ID":"SU0015772",
"Sample ID":"S00024598",
"Factors":{"Antibiotic":"no","Surgery":"VSG"}
},
{
"Subject ID":"SU0015773",
"Sample ID":"S00024599",
"Factors":{"Antibiotic":"no","Surgery":"VSG"}
},
{
"Subject ID":"SU0015774",
"Sample ID":"S00024600",
"Factors":{"Antibiotic":"no","Surgery":"VSG"}
},
{
"Subject ID":"SU0015775",
"Sample ID":"S00024601",
"Factors":{"Antibiotic":"no","Surgery":"VSG"}
},
{
"Subject ID":"SU0015776",
"Sample ID":"S00024602",
"Factors":{"Antibiotic":"no","Surgery":"VSG"}
},
{
"Subject ID":"SU0015777",
"Sample ID":"S00024603",
"Factors":{"Antibiotic":"no","Surgery":"VSG"}
},
{
"Subject ID":"SU0015778",
"Sample ID":"S00024604",
"Factors":{"Antibiotic":"no","Surgery":"VSG"}
},
{
"Subject ID":"SU0015779",
"Sample ID":"S00024605",
"Factors":{"Antibiotic":"no","Surgery":"NONE"}
},
{
"Subject ID":"SU0015780",
"Sample ID":"S00024606",
"Factors":{"Antibiotic":"no","Surgery":"NONE"}
},
{
"Subject ID":"SU0015781",
"Sample ID":"S00024607",
"Factors":{"Antibiotic":"no","Surgery":"NONE"}
},
{
"Subject ID":"SU0015782",
"Sample ID":"S00024608",
"Factors":{"Antibiotic":"no","Surgery":"NONE"}
},
{
"Subject ID":"SU0015783",
"Sample ID":"S00024609",
"Factors":{"Antibiotic":"no","Surgery":"NONE"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"A007 - Short Chain Fatty Acids.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"GC","INSTRUMENT_NAME":"Agilent 7890N","COLUMN_NAME":"Phenomenex Zebron ZB-WAXplus (30m x 0.25mm, 0.25um)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"A007 - Short Chain Fatty Acids.pdf"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 5975","INSTRUMENT_TYPE":"Single quadrupole","MS_TYPE":"EI","ION_MODE":"POSITIVE"},

"MS_METABOLITE_DATA":{
"Units":"uM",

"Data":[{"Metabolite":"PROPIONIC ACID","S00024574":"5.432434303","S00024575":"6.893039505","S00024576":"7.590830619","S00024577":"4.702076013","S00024578":"9.704052375","S00024579":"5.462059007","S00024580":"3.957806637","S00024581":"5.030557957","S00024582":"5.91935985","S00024583":"5.23677784","S00024584":"5.302708869","S00024585":"4.63880698","S00024586":"7.097182117","S00024587":"4.479132694","S00024588":"4.857185384","S00024589":"7.415286369","S00024590":"6.19264653","S00024591":"11.61134852","S00024592":"8.039707325","S00024593":"12.23371219","S00024594":"18.0792507","S00024595":"4.783430233","S00024596":"5.242082265","S00024597":"6.827853394","S00024598":"6.684902026","S00024599":"8.093633347","S00024600":"5.25178575","S00024601":"15.24506922","S00024602":"10.444978","S00024603":"15.17946284","S00024604":"15.32362011","S00024605":"12.24180263","S00024606":"15.24543709","S00024607":"3.832142186","S00024608":"5.400510554","S00024609":"8.384563377"},{"Metabolite":"ACETIC ACID","S00024574":"177.9322891","S00024575":"191.9792453","S00024576":"264.4409766","S00024577":"116.1258286","S00024578":"147.5231537","S00024579":"150.2370198","S00024580":"71.37946709","S00024581":"155.8702225","S00024582":"126.5503101","S00024583":"128.6646369","S00024584":"154.1427294","S00024585":"270.0898231","S00024586":"203.9769987","S00024587":"103.6850849","S00024588":"150.9190642","S00024589":"150.0703722","S00024590":"172.481167","S00024591":"211.6133321","S00024592":"180.4650813","S00024593":"286.7994087","S00024594":"335.8978138","S00024595":"206.0276394","S00024596":"172.5134581","S00024597":"173.5795451","S00024598":"160.5979074","S00024599":"207.0516275","S00024600":"145.086147","S00024601":"264.85096","S00024602":"279.844235","S00024603":"302.2752123","S00024604":"301.580251","S00024605":"268.9112359","S00024606":"362.6800722","S00024607":"127.6190479","S00024608":"89.94958208","S00024609":"231.0220242"},{"Metabolite":"BUTYRIC ACID","S00024574":"4.936472965","S00024575":"5.461949054","S00024576":"5.378846764","S00024577":"3.27265639","S00024578":"6.693285899","S00024579":"6.280350863","S00024580":"3.52689921","S00024581":"7.376379868","S00024582":"8.070454282","S00024583":"3.204406993","S00024584":"7.225977156","S00024585":"5.044628701","S00024586":"6.460205541","S00024587":"2.958998606","S00024588":"6.524558901","S00024589":"5.989369631","S00024590":"4.41382927","S00024591":"8.156647509","S00024592":"6.394012697","S00024593":"11.80395236","S00024594":"17.67590449","S00024595":"4.473255063","S00024596":"5.04268686","S00024597":"6.8090649","S00024598":"9.958230291","S00024599":"7.836214183","S00024600":"6.12899432","S00024601":"9.377111429","S00024602":"11.51271683","S00024603":"15.8898689","S00024604":"16.94950627","S00024605":"14.24845137","S00024606":"16.13281423","S00024607":"3.631686341","S00024608":"5.214119081","S00024609":"12.00199577"},{"Metabolite":"HEXANOIC ACID","S00024574":"0","S00024575":"0","S00024576":"0","S00024577":"0","S00024578":"0","S00024579":"0","S00024580":"0","S00024581":"0","S00024582":"0","S00024583":"0","S00024584":"0","S00024585":"0","S00024586":"0","S00024587":"0","S00024588":"0","S00024589":"0","S00024590":"0","S00024591":"0","S00024592":"0","S00024593":"1.159901947","S00024594":"0","S00024595":"0","S00024596":"0","S00024597":"0","S00024598":"0","S00024599":"0","S00024600":"0","S00024601":"0","S00024602":"0","S00024603":"5.072759522","S00024604":"2.076515345","S00024605":"1.33027762","S00024606":"0","S00024607":"0","S00024608":"0","S00024609":"0"}],

"Metabolites":[{"Metabolite":"PROPIONIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"1032","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"ACETIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"176","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"BUTYRIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"264","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"HEXANOIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"8892","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""}]
}

}