{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000733","ANALYSIS_ID":"AN001147","VERSION":"1","CREATED_ON":"July 3, 2017, 11:05 am"},

"PROJECT":{"PROJECT_TITLE":"Microbial changes following fecal microbiota transplantation (FMT) in patients with Clostridium difficile","PROJECT_TYPE":"MS analysis","PROJECT_SUMMARY":"Microbial changes following fecal microbiota transplantation in patients with recurrent Clostridium difficile infection","INSTITUTE":"University of Michigan","DEPARTMENT":"Internal Medicine","LABORATORY":"Young Lab","LAST_NAME":"Young","FIRST_NAME":"Vincent","ADDRESS":"Ann Arbor, MI","EMAIL":"youngvi@med.umich.edu","PHONE":"734-764-2237"},

"STUDY":{"STUDY_TITLE":"Microbial changes following fecal microbiota transplantation in patients with recurrent C. difficile infection","STUDY_TYPE":"MS analysis","STUDY_SUMMARY":"Fecal samples were collected from patients with recurrent Clostridium difficile infection before and after treatment with fecal microbiota transplantation. Fecal samples were frozen immediately after collections, and later put into ~50mg aliquots for later analysis (at -80 C).","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@med.umich.edu","PHONE":"(734) 232-8175","NUM_GROUPS":"21","TOTAL_SUBJECTS":"11"},

"SUBJECT":{"SUBJECT_TYPE":"Human","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0014864",
"Sample ID":"S00022742",
"Factors":{"patient type":"recipient","sample type":"pre"},
"Additional sample data":{"patientID":"R1","sample_n":"1"}
},
{
"Subject ID":"SU0014864",
"Sample ID":"S00022743",
"Factors":{"patient type":"recipient","sample type":"pre"},
"Additional sample data":{"patientID":"R1","sample_n":"2"}
},
{
"Subject ID":"SU0014864",
"Sample ID":"S00022744",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R1","sample_n":"3"}
},
{
"Subject ID":"SU0014864",
"Sample ID":"S00022745",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R1","sample_n":"4"}
},
{
"Subject ID":"SU0014864",
"Sample ID":"S00022746",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R1","sample_n":"5"}
},
{
"Subject ID":"SU0014864",
"Sample ID":"S00022747",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R1","sample_n":"6.0"}
},
{
"Subject ID":"SU0014865",
"Sample ID":"S00022748",
"Factors":{"patient type":"donor","sample type":"donor"},
"Additional sample data":{"patientID":"d1","sample_n":"1"}
},
{
"Subject ID":"SU0014865",
"Sample ID":"S00022749",
"Factors":{"patient type":"donor","sample type":"donor"},
"Additional sample data":{"patientID":"d1","sample_n":"2"}
},
{
"Subject ID":"SU0014866",
"Sample ID":"S00022750",
"Factors":{"patient type":"recipient","sample type":"pre"},
"Additional sample data":{"patientID":"R2","sample_n":"1"}
},
{
"Subject ID":"SU0014866",
"Sample ID":"S00022751",
"Factors":{"patient type":"recipient","sample type":"pre"},
"Additional sample data":{"patientID":"R2","sample_n":"2"}
},
{
"Subject ID":"SU0014866",
"Sample ID":"S00022752",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R2","sample_n":"3"}
},
{
"Subject ID":"SU0014866",
"Sample ID":"S00022753",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R2","sample_n":"4"}
},
{
"Subject ID":"SU0014866",
"Sample ID":"S00022754",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R2","sample_n":"5"}
},
{
"Subject ID":"SU0014866",
"Sample ID":"S00022755",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R2","sample_n":"6.0"}
},
{
"Subject ID":"SU0014867",
"Sample ID":"S00022756",
"Factors":{"patient type":"donor","sample type":"donor"},
"Additional sample data":{"patientID":"d2","sample_n":"1"}
},
{
"Subject ID":"SU0014867",
"Sample ID":"S00022757",
"Factors":{"patient type":"donor","sample type":"donor"},
"Additional sample data":{"patientID":"d2","sample_n":"2"}
},
{
"Subject ID":"SU0014868",
"Sample ID":"S00022758",
"Factors":{"patient type":"recipient","sample type":"pre"},
"Additional sample data":{"patientID":"R3","sample_n":"1"}
},
{
"Subject ID":"SU0014868",
"Sample ID":"S00022759",
"Factors":{"patient type":"recipient","sample type":"pre"},
"Additional sample data":{"patientID":"R3","sample_n":"2"}
},
{
"Subject ID":"SU0014868",
"Sample ID":"S00022760",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R3","sample_n":"4"}
},
{
"Subject ID":"SU0014868",
"Sample ID":"S00022761",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R3","sample_n":"5"}
},
{
"Subject ID":"SU0014868",
"Sample ID":"S00022762",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R3","sample_n":"6.0"}
},
{
"Subject ID":"SU0014869",
"Sample ID":"S00022763",
"Factors":{"patient type":"donor","sample type":"donor"},
"Additional sample data":{"patientID":"d3","sample_n":"1"}
},
{
"Subject ID":"SU0014869",
"Sample ID":"S00022764",
"Factors":{"patient type":"donor","sample type":"donor"},
"Additional sample data":{"patientID":"d3","sample_n":"2"}
},
{
"Subject ID":"SU0014870",
"Sample ID":"S00022765",
"Factors":{"patient type":"recipient","sample type":"pre"},
"Additional sample data":{"patientID":"R4","sample_n":"1"}
},
{
"Subject ID":"SU0014870",
"Sample ID":"S00022766",
"Factors":{"patient type":"recipient","sample type":"pre"},
"Additional sample data":{"patientID":"R4","sample_n":"2"}
},
{
"Subject ID":"SU0014870",
"Sample ID":"S00022767",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R4","sample_n":"3"}
},
{
"Subject ID":"SU0014870",
"Sample ID":"S00022768",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R4","sample_n":"4"}
},
{
"Subject ID":"SU0014870",
"Sample ID":"S00022769",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R4","sample_n":"5"}
},
{
"Subject ID":"SU0014870",
"Sample ID":"S00022770",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R4","sample_n":"6.0"}
},
{
"Subject ID":"SU0014871",
"Sample ID":"S00022771",
"Factors":{"patient type":"donor","sample type":"donor"},
"Additional sample data":{"patientID":"d4","sample_n":"1"}
},
{
"Subject ID":"SU0014871",
"Sample ID":"S00022772",
"Factors":{"patient type":"donor","sample type":"donor"},
"Additional sample data":{"patientID":"d4","sample_n":"2"}
},
{
"Subject ID":"SU0014872",
"Sample ID":"S00022773",
"Factors":{"patient type":"recipient","sample type":"pre"},
"Additional sample data":{"patientID":"R5","sample_n":"2"}
},
{
"Subject ID":"SU0014872",
"Sample ID":"S00022774",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R5","sample_n":"3"}
},
{
"Subject ID":"SU0014872",
"Sample ID":"S00022775",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R5","sample_n":"4"}
},
{
"Subject ID":"SU0014872",
"Sample ID":"S00022776",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R5","sample_n":"5"}
},
{
"Subject ID":"SU0014872",
"Sample ID":"S00022777",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R5","sample_n":"6.0"}
},
{
"Subject ID":"SU0014873",
"Sample ID":"S00022778",
"Factors":{"patient type":"donor","sample type":"donor"},
"Additional sample data":{"patientID":"d5","sample_n":"1"}
},
{
"Subject ID":"SU0014873",
"Sample ID":"S00022779",
"Factors":{"patient type":"donor","sample type":"donor"},
"Additional sample data":{"patientID":"d5","sample_n":"2"}
},
{
"Subject ID":"SU0014874",
"Sample ID":"S00022780",
"Factors":{"patient type":"recipient","sample type":"pre"},
"Additional sample data":{"patientID":"R6","sample_n":"1"}
},
{
"Subject ID":"SU0014874",
"Sample ID":"S00022781",
"Factors":{"patient type":"recipient","sample type":"pre"},
"Additional sample data":{"patientID":"R6","sample_n":"2"}
},
{
"Subject ID":"SU0014874",
"Sample ID":"S00022782",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R6","sample_n":"3"}
},
{
"Subject ID":"SU0014874",
"Sample ID":"S00022783",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R6","sample_n":"4"}
},
{
"Subject ID":"SU0014874",
"Sample ID":"S00022784",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R6","sample_n":"5"}
},
{
"Subject ID":"SU0014874",
"Sample ID":"S00022785",
"Factors":{"patient type":"recipient","sample type":"post"},
"Additional sample data":{"patientID":"R6","sample_n":"6.0"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"A007 - Short Chain Fatty Acids.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"GC","INSTRUMENT_NAME":"Agilent 7890N","COLUMN_NAME":"Phenomenex Zebron ZB-WAXplus (30m x 0.25mm, 0.25um)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"A007 - Short Chain Fatty Acids.pdf"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 5975","INSTRUMENT_TYPE":"Single quadrupole","MS_TYPE":"EI","ION_MODE":"POSITIVE"},

"MS_METABOLITE_DATA":{
"Units":"nmol/mg",

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"Metabolites":[{"Metabolite":"PROPIONIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"1032","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"ISOVALERIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"10430","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"ACETIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"176","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"BUTYRIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"264","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"OCTANOIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"379","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"VALERIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"7991","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"HEPTANOIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"8094","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"HEXANOIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"8892","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""}]
}

}