{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000747","ANALYSIS_ID":"AN001171","VERSION":"1","CREATED_ON":"July 3, 2017, 2:38 pm"},

"PROJECT":{"PROJECT_TITLE":"Metabolomics of mice inoculated with human microbiota","PROJECT_TYPE":"MS analysis","PROJECT_SUMMARY":"Metabolomics of mice inoculated with human microbiota","INSTITUTE":"Cornell University","DEPARTMENT":"Microbiology","LABORATORY":"Ley Lab","LAST_NAME":"Ley","FIRST_NAME":"Ruth","ADDRESS":"Ithaca, NY","EMAIL":"rel222@cornell.edu","PHONE":"607-255-4954"},

"STUDY":{"STUDY_TITLE":"Metabolomics of mice inoculated with human stool (part III).","STUDY_TYPE":"MS analysis","STUDY_SUMMARY":"Mice were inoculated with human stool samples from donors in a high gene copy number group or low gene copy number group. After several weeks, cecal contents were collected and frozen at -80. Aliquots were made on dry ice and then stored at -80 until shipment on dry ice. Analysis of short chain fatty acids (SCFA) of cecal content was performed.","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@med.umich.edu","PHONE":"(734) 232-8175","NUM_GROUPS":"56","TOTAL_SUBJECTS":"43"},

"SUBJECT":{"SUBJECT_TYPE":"Mouse","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10088"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0012437",
"Sample ID":"S00018932",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"34.6","Mouse DEXA fat %":"17.5"}
},
{
"Subject ID":"SU0012438",
"Sample ID":"S00018933",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"29.7","Mouse DEXA fat %":"17.7"}
},
{
"Subject ID":"SU0012439",
"Sample ID":"S00018934",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"42.1","Mouse DEXA fat %":"21.1"}
},
{
"Subject ID":"SU0012440",
"Sample ID":"S00018935",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"18.8","Mouse DEXA fat %":"20.7"}
},
{
"Subject ID":"SU0012441",
"Sample ID":"S00018936",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"10.9","Mouse DEXA fat %":"21.4"}
},
{
"Subject ID":"SU0012442",
"Sample ID":"S00018937",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"16.6","Mouse DEXA fat %":"17.7"}
},
{
"Subject ID":"SU0012443",
"Sample ID":"S00018938",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"32.5","Mouse DEXA fat %":"17.1"}
},
{
"Subject ID":"SU0012444",
"Sample ID":"S00018939",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"29.1","Mouse DEXA fat %":"18.6"}
},
{
"Subject ID":"SU0012445",
"Sample ID":"S00018940",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"23.5","Mouse DEXA fat %":"23.1"}
},
{
"Subject ID":"SU0012446",
"Sample ID":"S00018941",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"9.1","Mouse DEXA fat %":"21.7"}
},
{
"Subject ID":"SU0012447",
"Sample ID":"S00018942",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"22.9","Mouse DEXA fat %":"21.4"}
},
{
"Subject ID":"SU0012448",
"Sample ID":"S00018943",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"NA","Mouse DEXA fat %":"21.1"}
},
{
"Subject ID":"SU0012449",
"Sample ID":"S00018944",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"38","Mouse DEXA fat %":"19.9"}
},
{
"Subject ID":"SU0012450",
"Sample ID":"S00018945",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"20.3","Mouse DEXA fat %":"23.1"}
},
{
"Subject ID":"SU0012451",
"Sample ID":"S00018946",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"19.2","Mouse DEXA fat %":"22.2"}
},
{
"Subject ID":"SU0012452",
"Sample ID":"S00018947",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"NA","Mouse DEXA fat %":"22.4"}
},
{
"Subject ID":"SU0012453",
"Sample ID":"S00018948",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"21.6","Mouse DEXA fat %":"23.4"}
},
{
"Subject ID":"SU0012454",
"Sample ID":"S00018949",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"37.1","Mouse DEXA fat %":"18.5"}
},
{
"Subject ID":"SU0012455",
"Sample ID":"S00018950",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"35.6","Mouse DEXA fat %":"19.1"}
},
{
"Subject ID":"SU0012456",
"Sample ID":"S00018951",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"24.2","Mouse DEXA fat %":"20.8"}
},
{
"Subject ID":"SU0012457",
"Sample ID":"S00018952",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.3"},
"Additional sample data":{"Donor DEXA fat %":"16.7","Mouse DEXA fat %":"20.7"}
},
{
"Subject ID":"SU0012458",
"Sample ID":"S00018953",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"34.6","Mouse DEXA fat %":"13.5"}
},
{
"Subject ID":"SU0012459",
"Sample ID":"S00018954",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"29.7","Mouse DEXA fat %":"17.2"}
},
{
"Subject ID":"SU0012460",
"Sample ID":"S00018955",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"42.1","Mouse DEXA fat %":"13.2"}
},
{
"Subject ID":"SU0012461",
"Sample ID":"S00018956",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"18.8","Mouse DEXA fat %":"15.3"}
},
{
"Subject ID":"SU0012462",
"Sample ID":"S00018957",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"10.9","Mouse DEXA fat %":"13.9"}
},
{
"Subject ID":"SU0012463",
"Sample ID":"S00018958",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"16.6","Mouse DEXA fat %":"15.8"}
},
{
"Subject ID":"SU0012464",
"Sample ID":"S00018959",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"32.5","Mouse DEXA fat %":"13.9"}
},
{
"Subject ID":"SU0012465",
"Sample ID":"S00018960",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"29.1","Mouse DEXA fat %":"12.9"}
},
{
"Subject ID":"SU0012466",
"Sample ID":"S00018961",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"23.5","Mouse DEXA fat %":"14.4"}
},
{
"Subject ID":"SU0012467",
"Sample ID":"S00018962",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"9.1","Mouse DEXA fat %":"13.6"}
},
{
"Subject ID":"SU0012468",
"Sample ID":"S00018963",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"22.9","Mouse DEXA fat %":"15"}
},
{
"Subject ID":"SU0012469",
"Sample ID":"S00018964",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"NA","Mouse DEXA fat %":"16.8"}
},
{
"Subject ID":"SU0012470",
"Sample ID":"S00018965",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"38","Mouse DEXA fat %":"15"}
},
{
"Subject ID":"SU0012471",
"Sample ID":"S00018966",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"20.3","Mouse DEXA fat %":"22"}
},
{
"Subject ID":"SU0012472",
"Sample ID":"S00018967",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"24.2","Mouse DEXA fat %":"13.9"}
},
{
"Subject ID":"SU0012473",
"Sample ID":"S00018968",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"19.2","Mouse DEXA fat %":"20.3"}
},
{
"Subject ID":"SU0012474",
"Sample ID":"S00018969",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"NA","Mouse DEXA fat %":"14.6"}
},
{
"Subject ID":"SU0012475",
"Sample ID":"S00018970",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"21.6","Mouse DEXA fat %":"15.4"}
},
{
"Subject ID":"SU0012476",
"Sample ID":"S00018971",
"Factors":{"AMY1 group":"low","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"37.1","Mouse DEXA fat %":"15.8"}
},
{
"Subject ID":"SU0012477",
"Sample ID":"S00018972",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"35.6","Mouse DEXA fat %":"20.2"}
},
{
"Subject ID":"SU0012478",
"Sample ID":"S00018973",
"Factors":{"AMY1 group":"high","EXPERIMENT":"AMY1.4"},
"Additional sample data":{"Donor DEXA fat %":"16.7","Mouse DEXA fat %":"17.3"}
},
{
"Subject ID":"SU9999996",
"Sample ID":"S00020340",
"Factors":{"AMY1 group":"-","EXPERIMENT":"-"},
"Additional sample data":{"Donor DEXA fat %":"-","Mouse DEXA fat %":"-"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"A007 - Short Chain Fatty Acids.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"GC","INSTRUMENT_NAME":"Agilent 7890N","COLUMN_NAME":"Agilent HP5-MS (15m × 0.25mm, 0.25 um)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"A007 - Short Chain Fatty Acids.pdf"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 5975","INSTRUMENT_TYPE":"Single quadrupole","MS_TYPE":"EI","ION_MODE":"POSITIVE"},

"MS_METABOLITE_DATA":{
"Units":"pmol/mg",

"Data":[{"Metabolite":"PROPIONIC 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"Metabolites":[{"Metabolite":"PROPIONIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"1032","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"ISOVALERIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"10430","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"ACETIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"176","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"BUTYRIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"264","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"ISOBUTYRIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"6590","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"VALERIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"7991","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"HEPTANOIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"8094","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"HEXANOIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"8892","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""}]
}

}