{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000771","ANALYSIS_ID":"AN001218","VERSION":"1","CREATED_ON":"July 5, 2017, 1:20 pm"},

"PROJECT":{"PROJECT_TITLE":"Changes in lipid levels with knock out of ACADM (shACADM) Lipidomics","PROJECT_TYPE":"MS analysis","PROJECT_SUMMARY":"Looking for changes in lipid levels with knock out of ACADM","INSTITUTE":"University of Michigan","DEPARTMENT":"Molecular and Integrative Physiology","LABORATORY":"Lyssiotis Lab","LAST_NAME":"Lyssiotis","FIRST_NAME":"Costas","ADDRESS":"Ann Arbor, MI","EMAIL":"clyssiot@umich.edu","PHONE":"734-615-9133"},

"STUDY":{"STUDY_TITLE":"Looking for changes in lipid levels with knock out of ACADM (shACADM)","STUDY_TYPE":"MS analysis","STUDY_SUMMARY":"GSC 8-11 cells (20 million) were transduced with lentivirus coding for shACADM 4, 6, or scr (control). ACADM is an enzyme responsible for the metabolism of medium chain fatty acids (C4-C12). A round of selection was performed using puromycin to ensure only cells that had been transduced survived. Knockdown of ACADM was confirmed via western blot. Pellets were collected by centrifuging cells for 10 min at max speed. The pellets were washed and each sample was split into quadruplicate.","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@med.umich.edu","PHONE":"(734) 232-8175","NUM_GROUPS":"3","TOTAL_SUBJECTS":"3"},

"SUBJECT":{"SUBJECT_TYPE":"Human","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0014234",
"Sample ID":"S00021731",
"Factors":{"Transduced with":"shACADM4"}
},
{
"Subject ID":"SU0014234",
"Sample ID":"S00021732",
"Factors":{"Transduced with":"shACADM4"}
},
{
"Subject ID":"SU0014234",
"Sample ID":"S00021733",
"Factors":{"Transduced with":"shACADM4"}
},
{
"Subject ID":"SU0014234",
"Sample ID":"S00021734",
"Factors":{"Transduced with":"shACADM4"}
},
{
"Subject ID":"SU0014235",
"Sample ID":"S00021735",
"Factors":{"Transduced with":"shACADM6"}
},
{
"Subject ID":"SU0014235",
"Sample ID":"S00021736",
"Factors":{"Transduced with":"shACADM6"}
},
{
"Subject ID":"SU0014235",
"Sample ID":"S00021737",
"Factors":{"Transduced with":"shACADM6"}
},
{
"Subject ID":"SU0014235",
"Sample ID":"S00021738",
"Factors":{"Transduced with":"shACADM6"}
},
{
"Subject ID":"SU0014236",
"Sample ID":"S00021739",
"Factors":{"Transduced with":"shACADMscr"}
},
{
"Subject ID":"SU0014236",
"Sample ID":"S00021740",
"Factors":{"Transduced with":"shACADMscr"}
},
{
"Subject ID":"SU0014236",
"Sample ID":"S00021741",
"Factors":{"Transduced with":"shACADMscr"}
},
{
"Subject ID":"SU0014236",
"Sample ID":"S00021742",
"Factors":{"Transduced with":"shACADMscr"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"A008 - Acyl Carnitines.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Agilent","COLUMN_NAME":"Waters Xbridge BEH C18 (50 x 1mm, 3.5um)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"A008 - Acyl Carnitines.pdf"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 6490A QQQ","INSTRUMENT_TYPE":"Triple quadrupole","MS_TYPE":"ESI","ION_MODE":"POSITIVE"},

"MS_METABOLITE_DATA":{
"Units":"pmol/ug protein",

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}

}