{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000827","ANALYSIS_ID":"AN001315","VERSION":"1","CREATED_ON":"August 7, 2017, 3:27 pm"},

"PROJECT":{"PROJECT_TITLE":"Metabolic regulation by PARP-1 in myofibroblast differentiation and fibrosis","PROJECT_TYPE":"MS analysis","PROJECT_SUMMARY":"Analysis of wild type lung tissue after saline or bleomycin treatment","INSTITUTE":"University of Michigan","DEPARTMENT":"Deaprtment of Pathology","LABORATORY":"Sem H. Phan","LAST_NAME":"Hu","FIRST_NAME":"Biao","ADDRESS":"Ann Arbor, MI","EMAIL":"biaohu@med.umich.edu","PHONE":"734-7635731"},

"STUDY":{"STUDY_TITLE":"Metabolic analysis of Normal Mouse Lung Fiboblasts with/without TGFbeta treatment","STUDY_TYPE":"MS analysis","STUDY_SUMMARY":"Glycolysis/TCA/Nucleotide analysis (especially interested in alpha-ketoglutarate) and NAD+ and related metabolite analysis for parp1 ko and parp1 wild type lung tissue after saline or bleomycin treatment","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@med.umich.edu","PHONE":"(734) 232-8175","NUM_GROUPS":"2","TOTAL_SUBJECTS":"30"},

"SUBJECT":{"SUBJECT_TYPE":"MOUSE","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0003980",
"Sample ID":"S00014554",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0003981",
"Sample ID":"S00014555",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0003982",
"Sample ID":"S00014556",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0003983",
"Sample ID":"S00014557",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0003984",
"Sample ID":"S00014558",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0003985",
"Sample ID":"S00014559",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0003986",
"Sample ID":"S00014560",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
},
{
"Subject ID":"SU0003987",
"Sample ID":"S00014561",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
},
{
"Subject ID":"SU0003988",
"Sample ID":"S00014562",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
},
{
"Subject ID":"SU0003989",
"Sample ID":"S00014563",
"Factors":{"Bleomycin":"yes","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"no"}
},
{
"Subject ID":"SU0003990",
"Sample ID":"S00014564",
"Factors":{"Bleomycin":"yes","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"no"}
},
{
"Subject ID":"SU0003991",
"Sample ID":"S00014565",
"Factors":{"Bleomycin":"yes","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"no"}
},
{
"Subject ID":"SU0003992",
"Sample ID":"S00014566",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0003993",
"Sample ID":"S00014567",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0003994",
"Sample ID":"S00014568",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0003995",
"Sample ID":"S00014569",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0003996",
"Sample ID":"S00014570",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
},
{
"Subject ID":"SU0003997",
"Sample ID":"S00014571",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
},
{
"Subject ID":"SU0003998",
"Sample ID":"S00014572",
"Factors":{"Bleomycin":"yes","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"no"}
},
{
"Subject ID":"SU0003999",
"Sample ID":"S00014573",
"Factors":{"Bleomycin":"yes","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"no"}
},
{
"Subject ID":"SU0004000",
"Sample ID":"S00014574",
"Factors":{"Bleomycin":"yes","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"no"}
},
{
"Subject ID":"SU0004001",
"Sample ID":"S00014575",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0004002",
"Sample ID":"S00014576",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0004003",
"Sample ID":"S00014577",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0004004",
"Sample ID":"S00014578",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0004005",
"Sample ID":"S00014579",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0004006",
"Sample ID":"S00014580",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0004007",
"Sample ID":"S00014581",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
},
{
"Subject ID":"SU0004008",
"Sample ID":"S00014582",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
},
{
"Subject ID":"SU0004009",
"Sample ID":"S00014583",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"A010 - Ceramides.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Phenyl","INSTRUMENT_NAME":"Agilent","COLUMN_NAME":"Pinnacle DB Biphenyl, 140A, 1.9mkm, 2.1mm X 50mm (Restek)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"A010 - Ceramides.pdf"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 6490A QQQ","INSTRUMENT_TYPE":"Triple quadrupole","MS_TYPE":"ESI","ION_MODE":"POSITIVE"},

"MS_METABOLITE_DATA":{
"Units":"counts",

"Data":[{"Metabolite":"N-ICOSANOYLSPHINGOSINE","S00014554":"187726.2082","S00014555":"257996.5179","S00014556":"181075.134","S00014557":"119582.4733","S00014558":"133817.6561","S00014559":"81470.29751","S00014560":"181036.3685","S00014561":"209456.6369","S00014562":"320488.7738","S00014563":"132285.6415","S00014564":"131067.9974","S00014565":"164374.0507","S00014566":"222628.9276","S00014567":"310990.8647","S00014568":"197506.5612","S00014569":"103793.5756","S00014570":"506075.8974","S00014571":"367551.85","S00014572":"110971.7491","S00014573":"86491.02575","S00014574":"125452.0005","S00014575":"288947.7398","S00014576":"453491.4602","S00014577":"373769.5684","S00014578":"142085.6713","S00014579":"177898.5123","S00014580":"194922.2093","S00014581":"311762.3714","S00014582":"380515.7367","S00014583":"247455.1244"},{"Metabolite":"C22 CER","S00014554":"483038.069","S00014555":"583350.2541","S00014556":"355268.2794","S00014557":"230914.8352","S00014558":"306199.0198","S00014559":"224112.6849","S00014560":"657930.2302","S00014561":"504988.3198","S00014562":"887236.8942","S00014563":"220528.6348","S00014564":"230607.6113","S00014565":"290510.7538","S00014566":"456306.0274","S00014567":"908580.9516","S00014568":"448792.0912","S00014569":"303831.9649","S00014570":"1031293.125","S00014571":"884207.5029","S00014572":"264235.3273","S00014573":"175261.8318","S00014574":"252599.7688","S00014575":"663291.0877","S00014576":"866876.9734","S00014577":"714586.1185","S00014578":"331863.4573","S00014579":"251959.1613","S00014580":"334203.8306","S00014581":"711555.3195","S00014582":"644009.2631","S00014583":"687307.0188"},{"Metabolite":"C24:1 CER","S00014554":"1115337.067","S00014555":"1293227.6","S00014556":"803000.8996","S00014557":"1069697.973","S00014558":"983074.3611","S00014559":"724963.4276","S00014560":"1150454.036","S00014561":"1011958.89","S00014562":"1650140.043","S00014563":"831289.1932","S00014564":"871493.1217","S00014565":"1011155.527","S00014566":"890437.2805","S00014567":"1556087.736","S00014568":"1478464.951","S00014569":"1292919.823","S00014570":"2178300.24","S00014571":"1908131.013","S00014572":"979856.0874","S00014573":"794109.8388","S00014574":"895446.4592","S00014575":"1403065.76","S00014576":"1808533.639","S00014577":"1647473.141","S00014578":"1301576.557","S00014579":"1316577.435","S00014580":"1191452.575","S00014581":"1447581.604","S00014582":"1368437.153","S00014583":"1318523.472"}],

"Metabolites":[{"Metabolite":"N-ICOSANOYLSPHINGOSINE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5283566","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"C22 CER","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5283567","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"C24:1 CER","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5283568","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""}]
}

}