{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000827","ANALYSIS_ID":"AN001316","VERSION":"1","CREATED_ON":"August 7, 2017, 3:27 pm"},

"PROJECT":{"PROJECT_TITLE":"Metabolic regulation by PARP-1 in myofibroblast differentiation and fibrosis","PROJECT_TYPE":"MS analysis","PROJECT_SUMMARY":"Analysis of wild type lung tissue after saline or bleomycin treatment","INSTITUTE":"University of Michigan","DEPARTMENT":"Deaprtment of Pathology","LABORATORY":"Sem H. Phan","LAST_NAME":"Hu","FIRST_NAME":"Biao","ADDRESS":"Ann Arbor, MI","EMAIL":"biaohu@med.umich.edu","PHONE":"734-7635731"},

"STUDY":{"STUDY_TITLE":"Metabolic analysis of Normal Mouse Lung Fiboblasts with/without TGFbeta treatment","STUDY_TYPE":"MS analysis","STUDY_SUMMARY":"Glycolysis/TCA/Nucleotide analysis (especially interested in alpha-ketoglutarate) and NAD+ and related metabolite analysis for parp1 ko and parp1 wild type lung tissue after saline or bleomycin treatment","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@med.umich.edu","PHONE":"(734) 232-8175","NUM_GROUPS":"2","TOTAL_SUBJECTS":"30"},

"SUBJECT":{"SUBJECT_TYPE":"MOUSE","SUBJECT_SPECIES":"Mus musculus","TAXONOMY_ID":"10090"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0003980",
"Sample ID":"S00014554",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0003981",
"Sample ID":"S00014555",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0003982",
"Sample ID":"S00014556",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0003983",
"Sample ID":"S00014557",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0003984",
"Sample ID":"S00014558",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0003985",
"Sample ID":"S00014559",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0003986",
"Sample ID":"S00014560",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
},
{
"Subject ID":"SU0003987",
"Sample ID":"S00014561",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
},
{
"Subject ID":"SU0003988",
"Sample ID":"S00014562",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
},
{
"Subject ID":"SU0003989",
"Sample ID":"S00014563",
"Factors":{"Bleomycin":"yes","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"no"}
},
{
"Subject ID":"SU0003990",
"Sample ID":"S00014564",
"Factors":{"Bleomycin":"yes","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"no"}
},
{
"Subject ID":"SU0003991",
"Sample ID":"S00014565",
"Factors":{"Bleomycin":"yes","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"no"}
},
{
"Subject ID":"SU0003992",
"Sample ID":"S00014566",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0003993",
"Sample ID":"S00014567",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0003994",
"Sample ID":"S00014568",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0003995",
"Sample ID":"S00014569",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0003996",
"Sample ID":"S00014570",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
},
{
"Subject ID":"SU0003997",
"Sample ID":"S00014571",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
},
{
"Subject ID":"SU0003998",
"Sample ID":"S00014572",
"Factors":{"Bleomycin":"yes","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"no"}
},
{
"Subject ID":"SU0003999",
"Sample ID":"S00014573",
"Factors":{"Bleomycin":"yes","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"no"}
},
{
"Subject ID":"SU0004000",
"Sample ID":"S00014574",
"Factors":{"Bleomycin":"yes","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"no"}
},
{
"Subject ID":"SU0004001",
"Sample ID":"S00014575",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0004002",
"Sample ID":"S00014576",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0004003",
"Sample ID":"S00014577",
"Factors":{"Bleomycin":"no","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"yes"}
},
{
"Subject ID":"SU0004004",
"Sample ID":"S00014578",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0004005",
"Sample ID":"S00014579",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0004006",
"Sample ID":"S00014580",
"Factors":{"Bleomycin":"yes","Parp1 KO":"yes","Parp1 WT (129S Background)":"no","Saline":"no"}
},
{
"Subject ID":"SU0004007",
"Sample ID":"S00014581",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
},
{
"Subject ID":"SU0004008",
"Sample ID":"S00014582",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
},
{
"Subject ID":"SU0004009",
"Sample ID":"S00014583",
"Factors":{"Bleomycin":"no","Parp1 KO":"no","Parp1 WT (129S Background)":"yes","Saline":"yes"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"A010 - Ceramides.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Phenyl","INSTRUMENT_NAME":"Agilent","COLUMN_NAME":"Pinnacle DB Biphenyl, 140A, 1.9mkm, 2.1mm X 50mm (Restek)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"A010 - Ceramides.pdf"},

"MS":{"MS_COMMENTS":"-","INSTRUMENT_NAME":"Agilent 6490A QQQ","INSTRUMENT_TYPE":"Triple quadrupole","MS_TYPE":"ESI","ION_MODE":"POSITIVE"},

"MS_METABOLITE_DATA":{
"Units":"ng/mg",

"Data":[{"Metabolite":"C14 CER","S00014554":"4.870631563","S00014555":"6.409223317","S00014556":"2.368004292","S00014557":"2.236688703","S00014558":".340662321","S00014559":"3.660264842","S00014560":"5.964877314","S00014561":"4.578680604","S00014562":"10.84101496","S00014563":"1.268030255","S00014564":"1.597490906","S00014565":"2.125354344","S00014566":"3.512083989","S00014567":"8.055970241","S00014568":"2.208153178","S00014569":"4.705562861","S00014570":"15.21943391","S00014571":"12.13839689","S00014572":"2.219828537","S00014573":".372543919","S00014574":"1.602381332","S00014575":"9.741891914","S00014576":"10.64649284","S00014577":"7.552983943","S00014578":"5.663100822","S00014579":"4.153119098","S00014580":"7.924634002","S00014581":"8.408115935","S00014582":"3.156288667","S00014583":"6.526388554"},{"Metabolite":"N-(OLEOYL)-CERAMIDE","S00014554":"12.10998476","S00014555":"21.36554143","S00014556":"9.469688574","S00014557":"7.585676576","S00014558":"5.031747405","S00014559":"16.77068054","S00014560":"13.65580571","S00014561":"11.56791985","S00014562":"20.89738994","S00014563":"6.391097495","S00014564":"12.13280734","S00014565":"9.197000138","S00014566":"7.053164426","S00014567":"17.35629111","S00014568":"7.256699043","S00014569":"16.29964236","S00014570":"29.34923448","S00014571":"26.79475303","S00014572":"12.20462969","S00014573":"6.142393355","S00014574":"6.93930832","S00014575":"20.72669341","S00014576":"22.28501717","S00014577":"19.91020906","S00014578":"16.20818866","S00014579":"10.71025268","S00014580":"13.39497781","S00014581":"16.84744559","S00014582":"9.806828884","S00014583":"18.29494578"},{"Metabolite":"N-PALMITOYLSPHINGOSINE","S00014554":"701.0611432","S00014555":"973.5663592","S00014556":"453.2647235","S00014557":"326.8010481","S00014558":"143.4809212","S00014559":"622.2838579","S00014560":"765.5192732","S00014561":"672.2072459","S00014562":"1176.712722","S00014563":"255.195869","S00014564":"287.8832213","S00014565":"317.6015162","S00014566":"464.8610583","S00014567":"1134.199893","S00014568":"272.6366978","S00014569":"607.1488745","S00014570":"1787.725782","S00014571":"1673.393349","S00014572":"351.1547258","S00014573":"152.619319","S00014574":"266.8630189","S00014575":"1298.874305","S00014576":"1279.559348","S00014577":"1017.915718","S00014578":"511.8555612","S00014579":"477.9647156","S00014580":"739.7600113","S00014581":"1107.329604","S00014582":"491.0329699","S00014583":"865.334808"},{"Metabolite":"N-STEAROYLSPHINGOSINE","S00014554":"51.61256825","S00014555":"64.26226951","S00014556":"40.78364429","S00014557":"16.77680617","S00014558":"7.979776314","S00014559":"41.46667015","S00014560":"71.49862373","S00014561":"55.30364437","S00014562":"102.0980671","S00014563":"14.39757251","S00014564":"17.26711861","S00014565":"23.46824141","S00014566":"34.31367523","S00014567":"95.93127503","S00014568":"19.24916249","S00014569":"47.89374342","S00014570":"129.8439766","S00014571":"136.2266713","S00014572":"21.33190361","S00014573":"7.106598751","S00014574":"16.84673003","S00014575":"93.45575055","S00014576":"99.71198806","S00014577":"70.71331147","S00014578":"34.41142968","S00014579":"26.80321523","S00014580":"50.46849007","S00014581":"69.75100479","S00014582":"30.68369042","S00014583":"78.13484451"},{"Metabolite":"N-ICOSANOYLSPHINGOSINE","S00014554":"174.3426167","S00014555":"255.7336918","S00014556":"139.6546282","S00014557":"62.20027444","S00014558":"30.71824372","S00014559":"109.1202363","S00014560":"151.3360777","S00014561":"170.8348307","S00014562":"265.8896638","S00014563":"53.72947796","S00014564":"57.46707467","S00014565":"69.71788676","S00014566":"138.2518386","S00014567":"284.5449537","S00014568":"60.1601222","S00014569":"82.18642729","S00014570":"493.4462211","S00014571":"439.1755741","S00014572":"59.38204138","S00014573":"23.74646226","S00014574":"54.95190095","S00014575":"368.2328801","S00014576":"414.9148607","S00014577":"323.5935989","S00014578":"61.72632185","S00014579":"94.15969817","S00014580":"161.1328646","S00014581":"320.5072369","S00014582":"156.0354536","S00014583":"230.290402"},{"Metabolite":"C24 CER","S00014554":"42.83291757","S00014555":"58.46966565","S00014556":"24.00858145","S00014557":"29.50409049","S00014558":"25.25151438","S00014559":"21.07277326","S00014560":"47.59241771","S00014561":"36.9923413","S00014562":"68.99011381","S00014563":"29.92722367","S00014564":"23.56615543","S00014565":"26.37780615","S00014566":"11.12187572","S00014567":"54.8404284","S00014568":"23.37836359","S00014569":"18.07054448","S00014570":"83.42254006","S00014571":"60.0783517","S00014572":"22.23636328","S00014573":"24.53856184","S00014574":"23.82632106","S00014575":"56.06520895","S00014576":"56.45060276","S00014577":"15.93637862","S00014578":"17.91386358","S00014579":"10.65335255","S00014580":"28.78971566","S00014581":"75.74960783","S00014582":"72.85014718","S00014583":"18.32964987"}],

"Metabolites":[{"Metabolite":"C14 CER","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5282310","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"N-(OLEOYL)-CERAMIDE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5283563","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"N-PALMITOYLSPHINGOSINE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5283564","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"N-STEAROYLSPHINGOSINE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5283565","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"N-ICOSANOYLSPHINGOSINE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5283566","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"C24 CER","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5283571","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""}]
}

}