{ "METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000828","ANALYSIS_ID":"AN001834","VERSION":"1","CREATED_ON":"January 15, 2019, 12:36 pm"}, "PROJECT":{"PROJECT_TITLE":"Metabolic regulation by PARP-1 in myofibroblast differentiation and fibrosis","PROJECT_TYPE":"MS analysis","PROJECT_SUMMARY":"Analysis of wild type lung tissue after saline or bleomycin treatment","INSTITUTE":"University of Michigan","DEPARTMENT":"Deaprtment of Pathology","LABORATORY":"Sem H. Phan","LAST_NAME":"Hu","FIRST_NAME":"Biao","ADDRESS":"Ann Arbor, MI","EMAIL":"biaohu@med.umich.edu","PHONE":"734-7635731"}, "STUDY":{"STUDY_TITLE":"Metabolic analysis of Parp1 ko/wt Saline & Bleo Mouse Lung Fiboblasts and Human IPF & Normal Lung Fiboblasts 3","STUDY_TYPE":"MS analysis","STUDY_SUMMARY":"Glycolysis/TCA/Nucleotide analysis (especially interested in alpha-ketoglutarate) and NAD+ and related metabolite analysis for all samples","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@med.umich.edu","PHONE":"(734) 232-8175","NUM_GROUPS":"6","TOTAL_SUBJECTS":"16"}, "SUBJECT":{"SUBJECT_TYPE":"HUMAN","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606"}, "SUBJECT_SAMPLE_FACTORS":[ { "Subject ID":"SU0004492", "Sample ID":"S00015469", "Factors":{"Sample type":"Tissues","Species":"Mus musculus","bleomycin/IPF":"N","saline/HLF":"Y","wt B6":"Y"} }, { "Subject ID":"SU0004493", "Sample ID":"S00015470", "Factors":{"Sample type":"Tissues","Species":"Mus musculus","bleomycin/IPF":"N","saline/HLF":"Y","wt B6":"Y"} }, { "Subject ID":"SU0004494", "Sample ID":"S00015471", "Factors":{"Sample type":"Tissues","Species":"Mus musculus","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"Y"} }, { "Subject ID":"SU0004495", "Sample ID":"S00015472", "Factors":{"Sample type":"Tissues","Species":"Mus musculus","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"Y"} }, { "Subject ID":"SU0004496", "Sample ID":"S00015473", "Factors":{"Sample type":"Tissues","Species":"Mus musculus","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"Y"} }, { "Subject ID":"SU0004497", "Sample ID":"S00015474", "Factors":{"Sample type":"Tissues","Species":"Mus musculus","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"Y"} }, { "Subject ID":"SU0004498", "Sample ID":"S00015475", "Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"N","saline/HLF":"Y","wt B6":"N"} }, { "Subject ID":"SU0004499", "Sample ID":"S00015476", "Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"N","saline/HLF":"Y","wt B6":"N"} }, { "Subject ID":"SU0004500", "Sample ID":"S00015477", "Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"N","saline/HLF":"Y","wt B6":"N"} }, { "Subject ID":"SU0004501", "Sample ID":"S00015478", "Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"N","saline/HLF":"Y","wt B6":"N"} }, { "Subject ID":"SU0004502", "Sample ID":"S00015479", "Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"N","saline/HLF":"Y","wt B6":"N"} }, { "Subject ID":"SU0004503", "Sample ID":"S00015480", "Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"N"} }, { "Subject ID":"SU0004504", "Sample ID":"S00015481", "Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"N"} }, { "Subject ID":"SU0004505", "Sample ID":"S00015482", "Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"N"} }, { "Subject ID":"SU0004506", "Sample ID":"S00015483", "Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"N"} }, { "Subject ID":"SU0004507", "Sample ID":"S00015484", "Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"N"} } ], "COLLECTION":{"COLLECTION_SUMMARY":"-","SAMPLE_TYPE":"Cultured cells"}, "TREATMENT":{"TREATMENT_SUMMARY":"-"}, "SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"A010-Ceramides.pdf"}, "CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"Phenyl","INSTRUMENT_NAME":"Agilent","COLUMN_NAME":"Pinnacle DB Biphenyl, 140A, 1.9mkm, 2.1mm X 50mm (Restek)"}, "ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"A010-Ceramides.pdf","ACQUISITION_PARAMETERS_FILE":"QM033_2mmC18_Ceramide_MRM"}, "MS":{"INSTRUMENT_NAME":"Agilent 6490A QQQ","INSTRUMENT_TYPE":"Triple quadrupole","MS_TYPE":"ESI","ION_MODE":"POSITIVE","MS_COMMENTS":"none"}, "MS_METABOLITE_DATA":{ "Units":"counts", "Data":[{"Metabolite":"C22 CER","S00015469":"5703936.582","S00015470":"5015879.938","S00015471":"5467201.523","S00015472":"6207717.35","S00015473":"6183899.084","S00015474":"6941223.742","S00015475":"1789750.106","S00015476":"2430036.041","S00015477":"2736578.926","S00015478":"1759028.005","S00015479":"2164439.651","S00015480":"1043406.914","S00015481":"835781.0316","S00015482":"1106883.454","S00015483":"1281598.917","S00015484":"1273825.67"},{"Metabolite":"C24:1 CER","S00015469":"22157790.11","S00015470":"20169886.19","S00015471":"28601422.45","S00015472":"38763327.08","S00015473":"33508656.7","S00015474":"27013966.14","S00015475":"4395266.064","S00015476":"5056058.144","S00015477":"5724159.406","S00015478":"3835527.436","S00015479":"4598070.547","S00015480":"3316148.601","S00015481":"2967606.983","S00015482":"4547323.576","S00015483":"4872113.069","S00015484":"4184632.31"}], "Metabolites":[{"Metabolite":"C22 CER","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5283567","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"C24:1 CER","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5283568","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""}] } }