{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST000828","ANALYSIS_ID":"AN001837","VERSION":"1","CREATED_ON":"January 15, 2019, 12:36 pm"},

"PROJECT":{"PROJECT_TITLE":"Metabolic regulation by PARP-1 in myofibroblast differentiation and fibrosis","PROJECT_TYPE":"MS analysis","PROJECT_SUMMARY":"Analysis of wild type lung tissue after saline or bleomycin treatment","INSTITUTE":"University of Michigan","DEPARTMENT":"Deaprtment of Pathology","LABORATORY":"Sem H. Phan","LAST_NAME":"Hu","FIRST_NAME":"Biao","ADDRESS":"Ann Arbor, MI","EMAIL":"biaohu@med.umich.edu","PHONE":"734-7635731"},

"STUDY":{"STUDY_TITLE":"Metabolic analysis of Parp1 ko/wt Saline & Bleo Mouse Lung Fiboblasts and Human IPF & Normal Lung Fiboblasts 3","STUDY_TYPE":"MS analysis","STUDY_SUMMARY":"Glycolysis/TCA/Nucleotide analysis (especially interested in alpha-ketoglutarate) and NAD+ and related metabolite analysis for all samples","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714","EMAIL":"mkachman@med.umich.edu","PHONE":"(734) 232-8175","NUM_GROUPS":"6","TOTAL_SUBJECTS":"16"},

"SUBJECT":{"SUBJECT_TYPE":"HUMAN","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"SU0004492",
"Sample ID":"S00015469",
"Factors":{"Sample type":"Tissues","Species":"Mus musculus","bleomycin/IPF":"N","saline/HLF":"Y","wt B6":"Y"}
},
{
"Subject ID":"SU0004493",
"Sample ID":"S00015470",
"Factors":{"Sample type":"Tissues","Species":"Mus musculus","bleomycin/IPF":"N","saline/HLF":"Y","wt B6":"Y"}
},
{
"Subject ID":"SU0004494",
"Sample ID":"S00015471",
"Factors":{"Sample type":"Tissues","Species":"Mus musculus","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"Y"}
},
{
"Subject ID":"SU0004495",
"Sample ID":"S00015472",
"Factors":{"Sample type":"Tissues","Species":"Mus musculus","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"Y"}
},
{
"Subject ID":"SU0004496",
"Sample ID":"S00015473",
"Factors":{"Sample type":"Tissues","Species":"Mus musculus","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"Y"}
},
{
"Subject ID":"SU0004497",
"Sample ID":"S00015474",
"Factors":{"Sample type":"Tissues","Species":"Mus musculus","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"Y"}
},
{
"Subject ID":"SU0004498",
"Sample ID":"S00015475",
"Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"N","saline/HLF":"Y","wt B6":"N"}
},
{
"Subject ID":"SU0004499",
"Sample ID":"S00015476",
"Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"N","saline/HLF":"Y","wt B6":"N"}
},
{
"Subject ID":"SU0004500",
"Sample ID":"S00015477",
"Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"N","saline/HLF":"Y","wt B6":"N"}
},
{
"Subject ID":"SU0004501",
"Sample ID":"S00015478",
"Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"N","saline/HLF":"Y","wt B6":"N"}
},
{
"Subject ID":"SU0004502",
"Sample ID":"S00015479",
"Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"N","saline/HLF":"Y","wt B6":"N"}
},
{
"Subject ID":"SU0004503",
"Sample ID":"S00015480",
"Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"N"}
},
{
"Subject ID":"SU0004504",
"Sample ID":"S00015481",
"Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"N"}
},
{
"Subject ID":"SU0004505",
"Sample ID":"S00015482",
"Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"N"}
},
{
"Subject ID":"SU0004506",
"Sample ID":"S00015483",
"Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"N"}
},
{
"Subject ID":"SU0004507",
"Sample ID":"S00015484",
"Factors":{"Sample type":"Cells","Species":"Homo sapiens","bleomycin/IPF":"Y","saline/HLF":"N","wt B6":"N"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"-","SAMPLE_TYPE":"Cultured cells"},

"TREATMENT":{"TREATMENT_SUMMARY":"-"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"-","SAMPLEPREP_PROTOCOL_FILENAME":"A010-Ceramides.pdf"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"GC","INSTRUMENT_NAME":"Agilent GC_7890N","COLUMN_NAME":"Agilent DB5-MS (30m × 0.25mm, 0.25um)"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS","ANALYSIS_PROTOCOL_FILE":"A011-Glycolysis-TCA-nucleotides.pdf","ACQUISITION_PARAMETERS_FILE":"ALPHA KETO ACIDS-FULL.M"},

"MS":{"INSTRUMENT_NAME":"Agilent 5975","INSTRUMENT_TYPE":"Single quadrupole","MS_TYPE":"EI","ION_MODE":"POSITIVE","MS_COMMENTS":"none"},

"MS_METABOLITE_DATA":{
"Units":"uM",

"Data":[{"Metabolite":"PYRUVIC ACID","S00015469":"1.2120888","S00015470":"1.2122738","S00015471":"1.2166433","S00015472":"1.2240997","S00015473":"1.2343615","S00015474":"1.2364795","S00015475":"1.2239584","S00015476":"1.2458525","S00015477":"1.2510062","S00015478":"1.2534862","S00015479":"1.2427141","S00015480":"1.2304312","S00015481":"1.2203002","S00015483":"1.2220662","S00015484":"1.2503706"},{"Metabolite":"DL-ASPARTIC ACID","S00015469":"82.228826","S00015470":"83.121791","S00015471":"108.35697","S00015472":"208.59358","S00015473":"125.90848","S00015474":"193.98439","S00015475":"4.8687735","S00015476":"8.2218718","S00015477":"8.0346042","S00015478":"8.0066445","S00015479":"12.427014","S00015480":"6.3079602","S00015481":"4.6913311","S00015483":"3.7597118","S00015484":"10.857118"},{"Metabolite":"FUMARIC ACID","S00015469":"3.8291594","S00015470":"3.9963144","S00015471":"4.8130148","S00015472":"5.2062561","S00015473":"4.7341648","S00015474":"7.0042579","S00015475":"2.8785189","S00015476":"2.7818424","S00015477":"2.7896288","S00015478":"2.7916152","S00015479":"2.8256436","S00015480":"2.8390397","S00015481":"2.8076263","S00015483":"2.788486","S00015484":"3.1031532"},{"Metabolite":"2-KETOGLUTARIC ACID","S00015469":".2250877","S00015470":".2279765","S00015471":".2287517","S00015472":".2308893","S00015473":".2359683","S00015474":".2380787","S00015475":".2405373","S00015476":".2504593","S00015477":".2586114","S00015478":".2526327","S00015479":".2507883","S00015480":".2645688","S00015481":".2453656","S00015483":".2402555","S00015484":".2662557"},{"Metabolite":"L-ALANINE","S00015469":"2.1491892","S00015470":"2.4596988","S00015471":"4.2169022","S00015472":"7.72233","S00015473":"4.4421291","S00015474":"7.3234857","S00015475":".5943472","S00015476":"1.0897502","S00015477":"1.3225341","S00015478":"1.1751392","S00015479":"1.6511848","S00015480":"2.0681367","S00015481":"1.3205668","S00015483":"1.1158445","S00015484":"4.0713104"},{"Metabolite":"L-GLUTAMINE","S00015469":"6.8331443","S00015470":"6.4461493","S00015471":"19.418498","S00015472":"31.933477","S00015473":"13.350189","S00015474":"19.513302","S00015475":"11.692336","S00015476":"20.719397","S00015477":"21.157957","S00015478":"22.825003","S00015479":"29.682731","S00015480":"14.900903","S00015481":"10.147254","S00015483":"8.7444129","S00015484":"22.633999"},{"Metabolite":"DL-GLUTAMIC ACID","S00015469":"6.3028675","S00015470":"6.1040444","S00015471":"8.6936756","S00015472":"14.290988","S00015473":"8.9094007","S00015474":"14.378001","S00015475":"2.8702344","S00015476":"4.8957194","S00015477":"4.775305","S00015478":"4.8792137","S00015479":"6.8351299","S00015480":"3.9097877","S00015481":"2.9760384","S00015483":"2.4428808","S00015484":"6.6109082"},{"Metabolite":"LACTIC ACID","S00015469":"","S00015470":"","S00015471":"1.9040661","S00015472":"3.0101775","S00015473":"2.9742998","S00015474":"6.3374418","S00015475":"","S00015476":".3731999","S00015477":"1.055963","S00015478":"1.1604786","S00015479":".9431695","S00015480":"1.5286465","S00015481":".3026353","S00015483":".1891682","S00015484":"4.6088339"},{"Metabolite":"OXALACETIC ACID","S00015469":".1944054","S00015470":".1944054","S00015471":".1944054","S00015472":".1944054","S00015473":".1944054","S00015474":".1944054","S00015475":".1944054","S00015476":".1944054","S00015477":".1944054","S00015478":".1944054","S00015479":".1944054","S00015480":".1944054","S00015481":".1944054","S00015483":".1944054","S00015484":".1944054"}],

"Metabolites":[{"Metabolite":"PYRUVIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"1060","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"DL-ASPARTIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"424","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"FUMARIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"444972","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"2-KETOGLUTARIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"51","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"L-ALANINE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5950","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"L-GLUTAMINE","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"5961","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"DL-GLUTAMIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"611","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"LACTIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"612","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""},{"Metabolite":"OXALACETIC ACID","moverz_quant":"","ri":"","ri_type":"","pubchem_id":"970","inchi_key":"","kegg_id":"","other_id":"","other_id_type":""}]
}

}