{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST001268","ANALYSIS_ID":"AN002105","VERSION":"1","CREATED_ON":"October 23, 2019, 9:39 am"},

"PROJECT":{"PROJECT_TITLE":"Integrating microbiome and metabolome data to annotate metabolite origins","PROJECT_SUMMARY":"Untargeted metabolomics of host-associated samples has yielded insights into mechanisms by which microbes modulate health. However, data interpretation is challenged by the complexity of origins of the small molecules measured, which can come from the host, microbes that live within the host, or from other exposures such as diet or the environment. We address this challenge through development of AMON: Annotation of Metabolite Origins via Networks. AMON is an open-source bioinformatics application that can be used to annotate which compounds in the metabolome could have been produced by bacteria present or the host, to evaluate pathway enrichment of host verses microbial metabolites, and to visualize which compounds may have been produced by host versus microbial enzymes in KEGG pathway maps.","INSTITUTE":"University of Colorado ST:INSTITUTE                      University of Colorado, Denver","DEPARTMENT":"Anschutz Medical Campus","LAST_NAME":"Reisdorph","FIRST_NAME":"Nichole","ADDRESS":"12850 East Montview Blvd, Aurora, CO, 80045, USA","EMAIL":"nichole.reisdorph@ucdenver.edu","PHONE":"3037249234","FUNDING_SOURCE":"NIH"},

"STUDY":{"STUDY_TITLE":"Metabolome data to annotate metabolite origins","STUDY_SUMMARY":"Plasma metabolomics from HIV subjects and controls was incorporated with microbiome data to develop Annotation of Metabolite Origins via Networks (AMON).","INSTITUTE":"University of Colorado Denver|Anschutz Medical Campus","DEPARTMENT":"Anschutz Medical Campus","LAST_NAME":"Reisdorph","FIRST_NAME":"Nichole","ADDRESS":"12850 East Montview Blvd, Aurora, CO, 80045, USA","EMAIL":"nichole.reisdorph@ucdenver.edu","PHONE":"3037249234","TOTAL_SUBJECTS":"63"},

"SUBJECT":{"SUBJECT_TYPE":"Human","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606","GENDER":"Male and female"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"-",
"Sample ID":"GLD001",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"untreated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"24","sex":"Male","race":"White","ethnicity":"hispanic","height(cm)":"175","weight (kg)":"74","BMI (kg/m2)":"24.2","cd4_value":"741","viral_load_value":"2530","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD002",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"Yes","vaccine":"No","MSM":"Yes","receptive_anal_sex_frequency":"NA","age":"23","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"168","weight (kg)":"55","BMI (kg/m2)":"19.5","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"NA","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD003",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"54","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"162","weight (kg)":"69.6","BMI (kg/m2)":"26.5","cd4_value":"619","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"NA","antibiotic_1":"NA","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD004",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"untreated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"24","sex":"Male","race":"White","ethnicity":"hispanic","height(cm)":"46","weight (kg)":"170","BMI (kg/m2)":"15.9","cd4_value":"322","viral_load_value":"492","cd4_nadir":"-","antibiotics_past_6_months":"Yes","antibiotic_1":"azithromycin 7/2014 infection","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD005",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"Female","receptive_anal_sex_frequency":"NA","age":"31","sex":"Female","race":"White","ethnicity":"non-hispanic","height(cm)":"177","weight (kg)":"95","BMI (kg/m2)":"30.3","cd4_value":"831","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"Yes","antibiotic_1":"clindamycin","arv_AEI":"no","arv_II":"no","arv_NNRTI":"yes","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD006",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"Female","receptive_anal_sex_frequency":"Never","age":"40","sex":"Female","race":"White","ethnicity":"hispanic","height(cm)":"170","weight (kg)":"81","BMI (kg/m2)":"28","cd4_value":"1417","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"yes","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD007",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"untreated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"35","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"172","weight (kg)":"61.9","BMI (kg/m2)":"21","cd4_value":"478","viral_load_value":"32500","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD008",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"Yes","vaccine":"No","MSM":"Yes","receptive_anal_sex_frequency":"NA","age":"35","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"185","weight (kg)":"84.4","BMI (kg/m2)":"25","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD009",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"46","sex":"Male","race":"Black/African American","ethnicity":"non-hispanic","height(cm)":"176","weight (kg)":"82.2","BMI (kg/m2)":"26.5","cd4_value":"819","viral_load_value":"28","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"yes","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD010",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"Yes","vaccine":"No","MSM":"Yes","receptive_anal_sex_frequency":"NA","age":"50","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"187.5","weight (kg)":"103","BMI (kg/m2)":"29","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD011",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"Yes","vaccine":"Yes","MSM":"Yes","receptive_anal_sex_frequency":"NA","age":"31","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"181","weight (kg)":"82.6","BMI (kg/m2)":"25.2","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD012",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"Yes","vaccine":"Yes","MSM":"Yes","receptive_anal_sex_frequency":"NA","age":"31","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"189","weight (kg)":"80.9","BMI (kg/m2)":"22.6","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD013",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"Yes","vaccine":"Yes","MSM":"Yes","receptive_anal_sex_frequency":"NA","age":"33","sex":"Male","race":"White","ethnicity":"hispanic","height(cm)":"173","weight (kg)":"86.9","BMI (kg/m2)":"29","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD014",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"Female","receptive_anal_sex_frequency":"NA","age":"61","sex":"Female","race":"White","ethnicity":"non-hispanic","height(cm)":"165","weight (kg)":"62.5","BMI (kg/m2)":"23","cd4_value":"576","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"no","arv_PE":"yes"}
},
{
"Subject ID":"-",
"Sample ID":"GLD016",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"untreated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"33","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"183","weight (kg)":"86","BMI (kg/m2)":"25.7","cd4_value":"403","viral_load_value":"24200","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD017",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"Yes","vaccine":"No","MSM":"Yes","receptive_anal_sex_frequency":"NA","age":"39","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"184","weight (kg)":"85.1","BMI (kg/m2)":"25.1","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD018",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"Yes","vaccine":"Yes","MSM":"Yes","receptive_anal_sex_frequency":"NA","age":"38","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"173","weight (kg)":"84.4","BMI (kg/m2)":"28.2","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD019",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"48","sex":"Male","race":"Black/African American","ethnicity":"non-hispanic","height(cm)":"186","weight (kg)":"80","BMI (kg/m2)":"23.1","cd4_value":"177","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"yes","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD020",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"54","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"172","weight (kg)":"74.9","BMI (kg/m2)":"25.3","cd4_value":"1200","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"no","arv_PE":"yes"}
},
{
"Subject ID":"-",
"Sample ID":"GLD021",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"59","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"166","weight (kg)":"67.5","BMI (kg/m2)":"24.5","cd4_value":"578","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"yes","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD022",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"56","sex":"Male","race":"White","ethnicity":"hispanic","height(cm)":"173","weight (kg)":"82","BMI (kg/m2)":"27.4","cd4_value":"545","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"yes","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD023",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"50","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"177","weight (kg)":"71.2","BMI (kg/m2)":"22.7","cd4_value":"510","viral_load_value":"5314","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"yes","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD026",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"52","sex":"Male","race":"Black/African American","ethnicity":"non-hispanic","height(cm)":"181","weight (kg)":"88","BMI (kg/m2)":"26.9","cd4_value":"838","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"yes","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD027",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"Yes","receptive_anal_sex_frequency":"Never","age":"50","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"179","weight (kg)":"93","BMI (kg/m2)":"29","cd4_value":"648","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD028",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"untreated","high_risk":"HIV_pos","vaccine":"No","MSM":"Yes","receptive_anal_sex_frequency":"Never","age":"37","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"185","weight (kg)":"87","BMI (kg/m2)":"25.4","cd4_value":"598","viral_load_value":"159","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD029",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"44","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"183","weight (kg)":"96.9","BMI (kg/m2)":"28.9","cd4_value":"1114","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"no","arv_PE":"yes"}
},
{
"Subject ID":"-",
"Sample ID":"GLD030",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"37","sex":"Male","race":"White","ethnicity":"hispanic","height(cm)":"167","weight (kg)":"71.9","BMI (kg/m2)":"25.8","cd4_value":"998","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"Yes","antibiotic_1":"NA","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD031",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"untreated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"50","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"171","weight (kg)":"88.4","BMI (kg/m2)":"30.2","cd4_value":"447","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD032",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"Yes","vaccine":"No","MSM":"Yes","receptive_anal_sex_frequency":"NA","age":"45","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"171","weight (kg)":"69.4","BMI (kg/m2)":"23.7","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"NA","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD036",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"47","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"182","weight (kg)":"66.7","BMI (kg/m2)":"20.1","cd4_value":"334","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"Yes","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"yes","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD037",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"Yes","receptive_anal_sex_frequency":"< 1 time per week","age":"57","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"195","weight (kg)":"89.9","BMI (kg/m2)":"23.6","cd4_value":"659","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"Yes","antibiotic_1":"PCN","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD039",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"Female","receptive_anal_sex_frequency":"NA","age":"60","sex":"Female","race":"White","ethnicity":"non-hispanic","height(cm)":"163","weight (kg)":"63.5","BMI (kg/m2)":"23.9","cd4_value":"924","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD040",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"45","sex":"Male","race":"Black/African American","ethnicity":"non-hispanic","height(cm)":"153","weight (kg)":"56","BMI (kg/m2)":"23.9","cd4_value":"431","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD041",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"untreated","high_risk":"HIV_pos","vaccine":"No","MSM":"Yes","receptive_anal_sex_frequency":"< 1 time per week","age":"44","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"178","weight (kg)":"63.5","BMI (kg/m2)":"20","cd4_value":"616","viral_load_value":"518000","cd4_nadir":"-","antibiotics_past_6_months":"Yes","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD042",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"untreated","high_risk":"HIV_pos","vaccine":"No","MSM":"No","receptive_anal_sex_frequency":"Never","age":"51","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"180","weight (kg)":"86.7","BMI (kg/m2)":"26.8","cd4_value":"551","viral_load_value":"3880","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD043",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"Female","receptive_anal_sex_frequency":"NA","age":"60","sex":"Female","race":"White","ethnicity":"hispanic","height(cm)":"152","weight (kg)":"72","BMI (kg/m2)":"31.2","cd4_value":"1058","viral_load_value":"-","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"yes","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD044",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"51","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"178","weight (kg)":"83.2","BMI (kg/m2)":"26.3","cd4_value":"908","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD045",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"unknown","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"33","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"191","weight (kg)":"96.4","BMI (kg/m2)":"26.4","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD046",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"unknown","vaccine":"Yes","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"39","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"188","weight (kg)":"105.5","BMI (kg/m2)":"29.8","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD047",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"untreated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"23","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"190","weight (kg)":"73","BMI (kg/m2)":"20.2","cd4_value":"291","viral_load_value":"62800","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD048",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"unknown","vaccine":"Yes","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"28","sex":"Male","race":"White","ethnicity":"hispanic","height(cm)":"174","weight (kg)":"67.7","BMI (kg/m2)":"22.4","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD049",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"unknown","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"48","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"177","weight (kg)":"79.7","BMI (kg/m2)":"25.4","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD050",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"60","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"192","weight (kg)":"107.5","BMI (kg/m2)":"29.2","cd4_value":"950","viral_load_value":"-","cd4_nadir":"-","antibiotics_past_6_months":"Yes","antibiotic_1":"Amoxicillin","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"yes","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD051",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"unknown","vaccine":"Yes","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"41","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"176","weight (kg)":"77.1","BMI (kg/m2)":"24.9","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD053",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"62","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"177","weight (kg)":"68","BMI (kg/m2)":"21.7","cd4_value":"545","viral_load_value":"-","cd4_nadir":"-","antibiotics_past_6_months":"Yes","antibiotic_1":"Amoxicillin","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"yes","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD054",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"Female","receptive_anal_sex_frequency":"NA","age":"63","sex":"Female","race":"White","ethnicity":"hispanic","height(cm)":"167","weight (kg)":"85","BMI (kg/m2)":"30.4","cd4_value":"187","viral_load_value":"-","cd4_nadir":"-","antibiotics_past_6_months":"Yes","antibiotic_1":"Bactrim","arv_AEI":"yes","arv_II":"yes","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD055",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"48","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"179","weight (kg)":"86.6","BMI (kg/m2)":"27","cd4_value":"550","viral_load_value":"10","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"yes","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD056",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"Yes","vaccine":"No","MSM":"Yes","receptive_anal_sex_frequency":"NA","age":"46","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"179","weight (kg)":"95.9","BMI (kg/m2)":"29.9","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD057",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"58","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"176","weight (kg)":"72.5","BMI (kg/m2)":"23.4","cd4_value":"240","viral_load_value":"-","cd4_nadir":"-","antibiotics_past_6_months":"Yes","antibiotic_1":"NA","arv_AEI":"yes","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"yes","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD060",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"No","vaccine":"No","MSM":"Female","receptive_anal_sex_frequency":"NA","age":"38","sex":"Female","race":"Asian","ethnicity":"non-hispanic","height(cm)":"176","weight (kg)":"96","BMI (kg/m2)":"30","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD061",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"No","vaccine":"No","MSM":"No","receptive_anal_sex_frequency":"Never","age":"59","sex":"Male","race":"White","ethnicity":"hispanic","height(cm)":"173","weight (kg)":"74.5","BMI (kg/m2)":"24.9","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD062",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"No","vaccine":"No","MSM":"No","receptive_anal_sex_frequency":"Never","age":"33","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"178","weight (kg)":"95","BMI (kg/m2)":"30","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD063",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"No","vaccine":"No","MSM":"No","receptive_anal_sex_frequency":"Never","age":"37","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"188","weight (kg)":"94","BMI (kg/m2)":"26.6","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD065",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"No","vaccine":"No","MSM":"Female","receptive_anal_sex_frequency":"Never","age":"28","sex":"Female","race":"White","ethnicity":"non-hispanic","height(cm)":"159","weight (kg)":"50.3","BMI (kg/m2)":"20","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD066",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"No","vaccine":"No","MSM":"No","receptive_anal_sex_frequency":"Never","age":"22","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"166","weight (kg)":"62.6","BMI (kg/m2)":"22.7","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD069",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"48","sex":"Male","race":"Black/African American","ethnicity":"non-hispanic","height(cm)":"188","weight (kg)":"102","BMI (kg/m2)":"28.9","cd4_value":"1150","viral_load_value":"20","cd4_nadir":"-","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"no","arv_PE":"yes"}
},
{
"Subject ID":"-",
"Sample ID":"GLD070",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"No","vaccine":"No","MSM":"Female","receptive_anal_sex_frequency":"Never","age":"29","sex":"Female","race":"Other","ethnicity":"hispanic","height(cm)":"155","weight (kg)":"54.8","BMI (kg/m2)":"22.8","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD071",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"No","vaccine":"No","MSM":"Female","receptive_anal_sex_frequency":"Never","age":"26","sex":"Female","race":"White","ethnicity":"hispanic","height(cm)":"166","weight (kg)":"55.7","BMI (kg/m2)":"20.2","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"NA","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD072",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"62","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"176","weight (kg)":"62.6","BMI (kg/m2)":"20.2","cd4_value":"361.53","viral_load_value":"-","cd4_nadir":"600","antibiotics_past_6_months":"Yes","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"yes","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD073",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"untreated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"38","sex":"Male","race":"Black/African American","ethnicity":"non-hispanic","height(cm)":"186","weight (kg)":"75.1","BMI (kg/m2)":"21.7","cd4_value":"766.64","viral_load_value":"522935","cd4_nadir":"766.64","antibiotics_past_6_months":"Yes","antibiotic_1":"pencillin","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD074",
"Factors":{"HIV":"Negative"},
"Additional sample data":{"status":"Negative","treatment":"HIV_neg","high_risk":"No","vaccine":"No","MSM":"No","receptive_anal_sex_frequency":"Never","age":"28","sex":"Male","race":"White","ethnicity":"hispanic","height(cm)":"172","weight (kg)":"87.3","BMI (kg/m2)":"29.4","cd4_value":"NA","viral_load_value":"NA","cd4_nadir":"NA","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"no","arv_NNRTI":"no","arv_NRTI":"no","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD079",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"63","sex":"Male","race":"White","ethnicity":"non-hispanic","height(cm)":"177.8","weight (kg)":"72.8","BMI (kg/m2)":"23","cd4_value":"190","viral_load_value":"-","cd4_nadir":"13","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"yes","arv_NRTI":"yes","arv_PI":"no","arv_PE":"no"}
},
{
"Subject ID":"-",
"Sample ID":"GLD080",
"Factors":{"HIV":"Positive"},
"Additional sample data":{"status":"Chronic","treatment":"treated","high_risk":"HIV_pos","vaccine":"No","MSM":"unknown","receptive_anal_sex_frequency":"NA","age":"43","sex":"Male","race":"White","ethnicity":"hispanic","height(cm)":"172.7","weight (kg)":"83.5","BMI (kg/m2)":"28","cd4_value":"922.32","viral_load_value":"-","cd4_nadir":"390","antibiotics_past_6_months":"No","antibiotic_1":"NA","arv_AEI":"no","arv_II":"yes","arv_NNRTI":"no","arv_NRTI":"yes","arv_PI":"yes","arv_PE":"no"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"During a clinic visit, blood was drawn from HIV positive individuals and controls as previously described as part of a larger study of differences in the fecal microbiome in HIV positive and high risk populations [Caporaso JG, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7:335–6. doi:10.1038/nmeth.f.303].","SAMPLE_TYPE":"Blood (plasma)","STORAGE_CONDITIONS":"-80℃"},

"TREATMENT":{"TREATMENT_SUMMARY":"Three cohorts based on HIV status: (1) HIV-1 infection untreated; (2) chronic HIV-1 infection on long-term ART; (3) healthy controls (HIV-negative individuals both high and low risk for contracting HIV)."},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"100 µL of plasma spiked with internal standards underwent a protein crash with 400 µL ice cold methanol. The supernatant was dried under nitrogen. Methyl tert-butyl ether (MTBE) and water were added to extract the hydrophobic and hydrophilic compounds, respectively. The upper hydrophobic layer was transferred to a new tube and the lower hydrophilic layer was re-extracted with MTBE. The upper hydrophobic layer was combined, dried under nitrogen and reconstituted in 200 µL of methanol. The hydrophilic layer was dried under nitrogen, underwent a second protein crash with water and ice-cold methanol (1:4 water-methanol). The supernatant was removed, dried by SpeedVac at 45 °C and reconstituted in 100 µL of 5% acetonitrile in water. Both fractions were stored at -80 °C until LCMS analysis.","PROCESSING_STORAGE_CONDITIONS":"On ice"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_SUMMARY":"Gradient was as follows: 0–1 minutes 30–70% B, 1–7.92 minutes 70–100% B, 7.92–10.4 minutes 100% B, 10.4–10.5 minutes 100–30% B, 10.5–15.1 minutes 30% B.","CHROMATOGRAPHY_TYPE":"Reversed phase","INSTRUMENT_NAME":"Agilent 1290","COLUMN_NAME":"Agilent Zorbax RRHD SB-C18 (100 x 2.1mm, 1.8um)","FLOW_RATE":"0.7 mL/min","COLUMN_TEMPERATURE":"60 °C","SOLVENT_A":"water with 0.1% formic acid","SOLVENT_B":"60:36:4 isopropyl alcohol:acetonitrile:water with 0.1% formic acid","INJECTION_TEMPERATURE":"4 °C"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS"},

"MS":{"INSTRUMENT_NAME":"Agilent 6520 QTOF","INSTRUMENT_TYPE":"QTOF","MS_TYPE":"ESI","ION_MODE":"POSITIVE","MS_COMMENTS":"Scan range 50-1700 m/z, scan rate 2.2 spectra/sec, gas temp 300C, gas flow 12 L/min, nebulizer 30 psig, Vcap 4000 V, fragmentor 120 V. Data processed with Profinder B.08 using small molecule chromatographic extraction.","MS_RESULTS_FILE":"ST001268_AN002105_Results.txt UNITS:Abundance Has m/z:Neutral masses Has RT:Yes RT units:Minutes"}

}