{
"METABOLOMICS WORKBENCH":{"STUDY_ID":"ST001398","ANALYSIS_ID":"AN002337","VERSION":"1","CREATED_ON":"12-15-2022"},

"PROJECT":{"PROJECT_TITLE":"Mechanism of Trichloroethylene (TCE) toxicity in placenta","PROJECT_SUMMARY":"This study will provide important information on the mechanism of TCE toxicity in the placenta","INSTITUTE":"University of Michigan","DEPARTMENT":"Environmental Health","LABORATORY":"Loch-Caruso Lab","LAST_NAME":"Loch-Caruso","FIRST_NAME":"Rita","ADDRESS":"Ann Arbor, MI","EMAIL":"rlc@umich.edu","PHONE":"734-936-1256","DOI":"http://dx.doi.org/10.21228/M8VM30"},

"STUDY":{"STUDY_TITLE":"Mechanism of Trichloroethylene (TCE) toxicity in the placenta","STUDY_TYPE":"MS analysis","STUDY_SUMMARY":"Cells in culture will be exposed to S-(1,2-dichlorovinyl)-L-cysteine (DCVC), a relevant metabolite of TCE. The first cell line used will be HTR-8/SVneo, originally derived from first trimester female human cytotrophoblast cells and immortalized with simian virus 40 large T antigen, this cell line models first-trimester placental extravillous trophoblasts in vitro. HTR-8/SVneo cells will be cultured for 24 hours followed by exposure to cell culture media (control) or 20 µM DCVC for 6 or 12 hours. Cells (cells frozen in cell culture dish) will then be collected (n=5) In the TCE aim of this study, we will utilizeone cell model that phenotypically represents an important placental cell population.","INSTITUTE":"University of Michigan","DEPARTMENT":"Biomedical Research Core Facilities","LABORATORY":"Metabolomics core","LAST_NAME":"Kachman","FIRST_NAME":"Maureen","ADDRESS":"Ann Arbor, MI","EMAIL":"mkachman@med.umich.edu","PHONE":"734-232-0842","SUBMIT_DATE":"2020-06-08"},

"SUBJECT":{"SUBJECT_TYPE":"Human","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606"},
"SUBJECT_SAMPLE_FACTORS":[
{
"Subject ID":"-",
"Sample ID":"S00034911",
"Factors":{"Hours of Exposure":"12 hr","Treatment":"20 uM DCVC"},
"Additional sample data":{"Trial Number":"1","Sample name":"16_Elkin_N1_12hr_20 uM_DCVC_4-29-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034911-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034912",
"Factors":{"Hours of Exposure":"12 hr","Treatment":"20 uM DCVC"},
"Additional sample data":{"Trial Number":"2","Sample name":"17_Elkin_N2_12hr_20 uM_DCVC_4-29-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034912-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034913",
"Factors":{"Hours of Exposure":"12 hr","Treatment":"20 uM DCVC"},
"Additional sample data":{"Trial Number":"3","Sample name":"18_Elkin_N3_12hr_20 uM_DCVC_4-29-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034913-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034914",
"Factors":{"Hours of Exposure":"12 hr","Treatment":"20 uM DCVC"},
"Additional sample data":{"Trial Number":"4","Sample name":"19_Elkin_N4_12hr_20 uM_DCVC_4-29-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034914-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034915",
"Factors":{"Hours of Exposure":"12 hr","Treatment":"20 uM DCVC"},
"Additional sample data":{"Trial Number":"5","Sample name":"20_Elkin_N5_12hr_20 uM_DCVC_4-29-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034915-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034906",
"Factors":{"Hours of Exposure":"12 hr","Treatment":"No Treatment"},
"Additional sample data":{"Trial Number":"1","Sample name":"11_Elkin_N1_12hr_NT_4-29-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034906-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034907",
"Factors":{"Hours of Exposure":"12 hr","Treatment":"No Treatment"},
"Additional sample data":{"Trial Number":"2","Sample name":"12_Elkin_N2_12hr_NT_4-29-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034907-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034908",
"Factors":{"Hours of Exposure":"12 hr","Treatment":"No Treatment"},
"Additional sample data":{"Trial Number":"3","Sample name":"13_Elkin_N3_12hr_NT_4-29-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034908-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034909",
"Factors":{"Hours of Exposure":"12 hr","Treatment":"No Treatment"},
"Additional sample data":{"Trial Number":"4","Sample name":"14_Elkin_N4_12hr_NT_4-29-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034909-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034910",
"Factors":{"Hours of Exposure":"12 hr","Treatment":"No Treatment"},
"Additional sample data":{"Trial Number":"5","Sample name":"15_Elkin_N5_12hr_NT_4-29-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034910-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034901",
"Factors":{"Hours of Exposure":"6 hr","Treatment":"20 uM DCVC"},
"Additional sample data":{"Trial Number":"1","Sample name":"6_Elkin_N1_6hr_20 uM_DCVC_4-12-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034901-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034902",
"Factors":{"Hours of Exposure":"6 hr","Treatment":"20 uM DCVC"},
"Additional sample data":{"Trial Number":"2","Sample name":"7_Elkin_N2_6hr_20 uM_DCVC_4-12-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034902-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034903",
"Factors":{"Hours of Exposure":"6 hr","Treatment":"20 uM DCVC"},
"Additional sample data":{"Trial Number":"3","Sample name":"8_Elkin_N3_6hr_20 uM_DCVC_4-12-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034903-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034904",
"Factors":{"Hours of Exposure":"6 hr","Treatment":"20 uM DCVC"},
"Additional sample data":{"Trial Number":"4","Sample name":"9_Elkin_N4_6hr_20 uM_DCVC_4-12-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034904-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034905",
"Factors":{"Hours of Exposure":"6 hr","Treatment":"20 uM DCVC"},
"Additional sample data":{"Trial Number":"5","Sample name":"10_Elkin_N5_6hr_20 uM_DCVC_4-12-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034905-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034896",
"Factors":{"Hours of Exposure":"6 hr","Treatment":"No Treatment"},
"Additional sample data":{"Trial Number":"1","Sample name":"1_Elkin_N1_6hr_NT_4-12-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034896-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034897",
"Factors":{"Hours of Exposure":"6 hr","Treatment":"No Treatment"},
"Additional sample data":{"Trial Number":"2","Sample name":"2_Elkin_N2_6hr_NT_4-12-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034897-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034898",
"Factors":{"Hours of Exposure":"6 hr","Treatment":"No Treatment"},
"Additional sample data":{"Trial Number":"3","Sample name":"3_Elkin_N3_6hr_NT_4-12-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034898-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034899",
"Factors":{"Hours of Exposure":"6 hr","Treatment":"No Treatment"},
"Additional sample data":{"Trial Number":"4","Sample name":"4_Elkin_N4_6hr_NT_4-12-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034899-N"}
},
{
"Subject ID":"-",
"Sample ID":"S00034900",
"Factors":{"Hours of Exposure":"6 hr","Treatment":"No Treatment"},
"Additional sample data":{"Trial Number":"5","Sample name":"5_Elkin_N5_6hr_NT_4-12-18","RAW_FILE_NAME":"20180515-EX00848-A043-IN0001-S00034900-N"}
}
],
"COLLECTION":{"COLLECTION_SUMMARY":"Standard tissue culture sample collection method","SAMPLE_TYPE":"Cultured cells"},

"TREATMENT":{"TREATMENT_SUMMARY":"Exposure to cell culture media (control) or 20 µM S-(1,2-dichlorovinyl)-L-cysteine (DCVC) for 6 or 12 hours"},

"SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"Standard TCS-plus assay sample preparation protocol","SAMPLEPREP_PROTOCOL_FILENAME":"SP_A043_TCA_Plus_20170713.PDF"},

"CHROMATOGRAPHY":{"CHROMATOGRAPHY_SUMMARY":"HILIC NH2 chromatography","INSTRUMENT_NAME":"Agilent 1200","COLUMN_NAME":"Phenomenex Luna NH2 (150 x 2.1mm,3um)","SOLVENT_A":"100% water; 5mM ammonium acetate, pH 9.9, adjust with ammonium hydroxide","SOLVENT_B":"100% acetonitrile","CHROMATOGRAPHY_TYPE":"HILIC"},

"ANALYSIS":{"ANALYSIS_TYPE":"MS"},

"MS":{"INSTRUMENT_NAME":"Agilent 6520 QTOF","INSTRUMENT_TYPE":"QTOF","MS_TYPE":"ESI","MS_COMMENTS":"Quantitative data analysis using Agilent Quant software","ION_MODE":"NEGATIVE"},

"MS_METABOLITE_DATA":{
"Units":"pmol/ug",

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