{ "METABOLOMICS WORKBENCH":{"STUDY_ID":"ST001923","ANALYSIS_ID":"AN003125","VERSION":"1","CREATED_ON":"October 8, 2021, 9:19 am"}, "PROJECT":{"PROJECT_TITLE":"Urine-Based Metabolomics and Machine Learning Reveals Metabolites Associated with Renal Cell Carcinoma Progression","PROJECT_TYPE":"multi-platform urine-based metabolomics","PROJECT_SUMMARY":"Every year, hundreds of thousands of cases of renal carcinoma (RCC) are reported worldwide. Accurate staging of the disease is important for treatment and prognosis purposes; however, contemporary methods such as computerized tomography (CT) and biopsies are expensive and prone to sampling errors, respectively. As such, a non-invasive diagnostic assay for staging would be beneficial. This study aims to investigate urine metabolites as potential biomarkers to stage RCC. In the study, we identified a panel of such urine metabolites with machine learning techniques.","INSTITUTE":"University of Georgia","DEPARTMENT":"Biochemistry and Molecular Biology","LABORATORY":"Fernandez Lab/ Edison Lab","LAST_NAME":"Bifarin","FIRST_NAME":"Olatomiwa","ADDRESS":"315 Riverbend Rd, Athens, GA 30602","EMAIL":"olatomiwa.bifarin25@uga.edu","PHONE":"(706) 542-4401 Lab: 1045"}, "STUDY":{"STUDY_TITLE":"Urine-Based Metabolomics and Machine Learning Reveals Metabolites Associated with Renal Cell Carcinoma Progression","STUDY_SUMMARY":"Every year, hundreds of thousands of cases of renal carcinoma (RCC) are reported worldwide. Accurate staging of the disease is important for treatment and prognosis purposes; however, contemporary methods such as computerized tomography (CT) and biopsies are expensive and prone to sampling errors, respectively. As such, a non-invasive diagnostic assay for staging would be beneficial. This study aims to investigate urine metabolites as potential biomarkers to stage RCC. In the study, we identified a panel of such urine metabolites with machine learning techniques.","INSTITUTE":"University of Georgia","DEPARTMENT":"Department of Biochemistry and Molecular Biology","LABORATORY":"Edison Lab","LAST_NAME":"Bifarin","FIRST_NAME":"Olatomiwa","ADDRESS":"315 Riverbend Rd, Athens, GA 30602","EMAIL":"olatomiwa.bifarin25@uga.edu","PHONE":"757-405-4379","NUM_GROUPS":"Two"}, "SUBJECT":{"SUBJECT_TYPE":"Human","SUBJECT_SPECIES":"Homo sapiens","TAXONOMY_ID":"9606"}, "SUBJECT_SAMPLE_FACTORS":[ { "Subject ID":"-", "Sample ID":"C001", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C001","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Never","BMI":"24.4","Age":"38.1","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"2.9"} }, { "Subject ID":"-", "Sample ID":"C002", "Factors":{"Factor":"Unknown"}, "Additional sample data":{"RAW_FILE_NAME":"C002","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Never","BMI":"30.6","Age":"64.9","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"Unknown","Tumor Width":"3"} }, { "Subject ID":"-", "Sample ID":"C003", "Factors":{"Factor":"Unknown"}, "Additional sample data":{"RAW_FILE_NAME":"C003","Sample description":"Chromophobe carcinoma","Gender":"Male","Race":"White","Smoker":"Never","BMI":"34.2","Age":"64","Metastatic":"No","SubTypes":"Chromophobe","Nuclear Grade":"Unknown","Grade":"Unknown","Stage":"Unknown","Tumor Width":"5.5"} }, { "Subject ID":"-", "Sample ID":"C004", "Factors":{"Factor":"Unknown"}, "Additional sample data":{"RAW_FILE_NAME":"C004","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Never","BMI":"24.7","Age":"84.8","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"Unknown","Tumor Width":"4.7"} }, { "Subject ID":"-", "Sample ID":"C005", "Factors":{"Factor":"Unknown"}, "Additional sample data":{"RAW_FILE_NAME":"C005","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Former","BMI":"32.2","Age":"55.7","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"Unknown","Tumor Width":"2.4"} }, { "Subject ID":"-", "Sample ID":"C006", "Factors":{"Factor":"Unknown"}, "Additional sample data":{"RAW_FILE_NAME":"C006","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Never","BMI":"27.8","Age":"59","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"Unknown","Tumor Width":"2"} }, { "Subject ID":"-", "Sample ID":"C007", "Factors":{"Factor":"Unknown"}, "Additional sample data":{"RAW_FILE_NAME":"C007","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Never","BMI":"32.2","Age":"44.7","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"Unknown","Tumor Width":"4"} }, { "Subject ID":"-", "Sample ID":"C009", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C009","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Never","BMI":"27.2","Age":"50.8","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"2","Tumor Width":"10.1"} }, { "Subject ID":"-", "Sample ID":"C011", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C011","Sample description":"Sarcomatoid","Gender":"Female","Race":"White","Smoker":"Never","BMI":"23.9","Age":"74.5","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"4","Tumor Width":"9.4"} }, { "Subject ID":"-", "Sample ID":"C012", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C012","Sample description":"Papillary RCC","Gender":"Male","Race":"White","Smoker":"Former","BMI":"27.2","Age":"77.4","Metastatic":"No","SubTypes":"Papillary","Nuclear Grade":"3","Grade":"High","Stage":"1","Tumor Width":"4.3"} }, { "Subject ID":"-", "Sample ID":"C013", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C013","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"American-Indian/Alaskan-Native","Smoker":"Never","BMI":"25","Age":"46.2","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"3.9"} }, { "Subject ID":"-", "Sample ID":"C014", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C014","Sample description":"Sarcomatoid","Gender":"Male","Race":"White","Smoker":"Never","BMI":"35.4","Age":"60.9","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"3","Tumor Width":"10.3"} }, { "Subject ID":"-", "Sample ID":"C015", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C015","Sample description":"Sarcomatoid","Gender":"Male","Race":"White","Smoker":"Never","BMI":"21.8","Age":"45.2","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"4","Tumor Width":"12.4"} }, { "Subject ID":"-", "Sample ID":"C016", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C016","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Current","BMI":"32.5","Age":"35.1","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"1","Tumor Width":"3.5"} }, { "Subject ID":"-", "Sample ID":"C018", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C018","Sample description":"Chromophobe carcinoma","Gender":"Female","Race":"Black/AA","Smoker":"Never","BMI":"24.9","Age":"56","Metastatic":"No","SubTypes":"Chromophobe","Nuclear Grade":"3","Grade":"High","Stage":"2","Tumor Width":"11.5"} }, { "Subject ID":"-", "Sample ID":"C019", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C019","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Never","BMI":"37.3","Age":"58.8","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"3","Tumor Width":"9.3"} }, { "Subject ID":"-", "Sample ID":"C020", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C020","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"Black/AA","Smoker":"Former","BMI":"41","Age":"72.9","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"2","Tumor Width":"9.5"} }, { "Subject ID":"-", "Sample ID":"C021", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C021","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Former","BMI":"31","Age":"76.6","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"4","Tumor Width":"9.5"} }, { "Subject ID":"-", "Sample ID":"C022", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C022","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Former","BMI":"38.4","Age":"55.1","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"1","Tumor Width":"3.3"} }, { "Subject ID":"-", "Sample ID":"C024", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C024","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Never","BMI":"36.4","Age":"52.8","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"3.9"} }, { "Subject ID":"-", "Sample ID":"C025", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C025","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Never","BMI":"23.5","Age":"67","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"3","Tumor Width":"6.7"} }, { "Subject ID":"-", "Sample ID":"C026", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C026","Sample description":"Sarcomatoid","Gender":"Female","Race":"White","Smoker":"Never","BMI":"23.9","Age":"59.4","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"4","Tumor Width":"11.2"} }, { "Subject ID":"-", "Sample ID":"C027", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C027","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Former","BMI":"26.7","Age":"55.8","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"1","Tumor Width":"2.7"} }, { "Subject ID":"-", "Sample ID":"C028", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C028","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Former","BMI":"31.7","Age":"68.8","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"4","Tumor Width":"8.5"} }, { "Subject ID":"-", "Sample ID":"C030", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C030","Sample description":"Cancer (Other)","Gender":"Male","Race":"White","Smoker":"Current","BMI":"18.2","Age":"67.7","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"3","Tumor Width":"10"} }, { "Subject ID":"-", "Sample ID":"C031", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C031","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Never","BMI":"26.4","Age":"69.5","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"3","Tumor Width":"5.3"} }, { "Subject ID":"-", "Sample ID":"C033", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C033","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"Unk/Missing","Smoker":"Never","BMI":"30.2","Age":"31","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"3","Tumor Width":"15"} }, { "Subject ID":"-", "Sample ID":"C034", "Factors":{"Factor":"Unknown"}, "Additional sample data":{"RAW_FILE_NAME":"C034","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Former","BMI":"28.1","Age":"56","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"Unknown","Grade":"Unknown","Stage":"Unknown","Tumor Width":"Unknown"} }, { "Subject ID":"-", "Sample ID":"C036", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C036","Sample description":"Clear Cell Papillary","Gender":"Female","Race":"Black/AA","Smoker":"Never","BMI":"37.1","Age":"53","Metastatic":"No","SubTypes":"Clear Cell Papillary","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"2.2"} }, { "Subject ID":"-", "Sample ID":"C037", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C037","Sample description":"Papillary RCC","Gender":"Male","Race":"Black/AA","Smoker":"Never","BMI":"31","Age":"55.6","Metastatic":"No","SubTypes":"Papillary","Nuclear Grade":"3","Grade":"High","Stage":"1","Tumor Width":"3.5"} }, { "Subject ID":"-", "Sample ID":"C038", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C038","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Former","BMI":"34","Age":"77.1","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"3","Tumor Width":"5.5"} }, { "Subject ID":"-", "Sample ID":"C039", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C039","Sample description":"Chromophobe carcinoma","Gender":"Male","Race":"White","Smoker":"Never","BMI":"30","Age":"80.1","Metastatic":"No","SubTypes":"Chromophobe","Nuclear Grade":"4","Grade":"High","Stage":"1","Tumor Width":"5.2"} }, { "Subject ID":"-", "Sample ID":"C040", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C040","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Former","BMI":"33.3","Age":"62.5","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"1","Tumor Width":"4.2"} }, { "Subject ID":"-", "Sample ID":"C041", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C041","Sample description":"Cancer (Other)","Gender":"Male","Race":"White","Smoker":"Former","BMI":"33.6","Age":"65.6","Metastatic":"Yes","SubTypes":"Unclassified","Nuclear Grade":"4","Grade":"High","Stage":"4","Tumor Width":"3.5"} }, { "Subject ID":"-", "Sample ID":"C043", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C043","Sample description":"Sarcomatoid","Gender":"Female","Race":"White","Smoker":"Never","BMI":"38.5","Age":"58.3","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"4","Tumor Width":"5.5"} }, { "Subject ID":"-", "Sample ID":"C044", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C044","Sample description":"Cancer (Other)","Gender":"Female","Race":"Black/AA","Smoker":"Never","BMI":"29.4","Age":"66.6","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"3","Tumor Width":"12.8"} }, { "Subject ID":"-", "Sample ID":"C045", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C045","Sample description":"Sarcomatoid","Gender":"Male","Race":"Black/AA","Smoker":"Never","BMI":"29.5","Age":"42.5","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"4","Tumor Width":"27"} }, { "Subject ID":"-", "Sample ID":"C046", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C046","Sample description":"Chromophobe carcinoma","Gender":"Female","Race":"White","Smoker":"Former","BMI":"27.4","Age":"55.4","Metastatic":"No","SubTypes":"Chromophobe","Nuclear Grade":"4","Grade":"High","Stage":"1","Tumor Width":"4.1"} }, { "Subject ID":"-", "Sample ID":"C047", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C047","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Former","BMI":"32.7","Age":"82.9","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"1","Tumor Width":"4.1"} }, { "Subject ID":"-", "Sample ID":"C048", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C048","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Former","BMI":"31","Age":"72.4","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"3","Tumor Width":"10.8"} }, { "Subject ID":"-", "Sample ID":"C049", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C049","Sample description":"Sarcomatoid","Gender":"Male","Race":"White","Smoker":"Never","BMI":"36.3","Age":"64.2","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"1","Tumor Width":"5.2"} }, { "Subject ID":"-", "Sample ID":"C050", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C050","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"Asian","Smoker":"Never","BMI":"15.7","Age":"73","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"3","Tumor Width":"11.4"} }, { "Subject ID":"-", "Sample ID":"C051", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C051","Sample description":"Cancer (Other)","Gender":"Male","Race":"White","Smoker":"Never","BMI":"23","Age":"30.2","Metastatic":"Yes","SubTypes":"Unclassified","Nuclear Grade":"3","Grade":"High","Stage":"4","Tumor Width":"10.4"} }, { "Subject ID":"-", "Sample ID":"C052", "Factors":{"Factor":"Unknown"}, "Additional sample data":{"RAW_FILE_NAME":"C052","Sample description":"Clear Cell Papillary","Gender":"Female","Race":"Unk/Missing","Smoker":"Former","BMI":"45","Age":"64.5","Metastatic":"No","SubTypes":"Clear Cell Papillary","Nuclear Grade":"2","Grade":"Low","Stage":"Unknown","Tumor Width":"3.2"} }, { "Subject ID":"-", "Sample ID":"C053", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C053","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Former","BMI":"42.1","Age":"68.2","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"5"} }, { "Subject ID":"-", "Sample ID":"C054", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C054","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Never","BMI":"24.4","Age":"67.8","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"1","Tumor Width":"1.6"} }, { "Subject ID":"-", "Sample ID":"C057", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C057","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Never","BMI":"35.2","Age":"60.5","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"1.5"} }, { "Subject ID":"-", "Sample ID":"C058", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C058","Sample description":"Papillary RCC","Gender":"Male","Race":"Black/AA","Smoker":"Former","BMI":"24.7","Age":"83.7","Metastatic":"No","SubTypes":"Papillary","Nuclear Grade":"3","Grade":"High","Stage":"2","Tumor Width":"8"} }, { "Subject ID":"-", "Sample ID":"C059", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C059","Sample description":"Sarcomatoid","Gender":"Male","Race":"White","Smoker":"Former","BMI":"27.7","Age":"75.5","Metastatic":"No","SubTypes":"Papillary","Nuclear Grade":"4","Grade":"High","Stage":"3","Tumor Width":"5.5"} }, { "Subject ID":"-", "Sample ID":"C060", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C060","Sample description":"Sarcomatoid","Gender":"Male","Race":"Mixed","Smoker":"Never","BMI":"24.9","Age":"43.3","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"3","Tumor Width":"11"} }, { "Subject ID":"-", "Sample ID":"C061", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C061","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Never","BMI":"21.1","Age":"47.2","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"3"} }, { "Subject ID":"-", "Sample ID":"C062", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C062","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Never","BMI":"31","Age":"76.4","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"1","Tumor Width":"2.6"} }, { "Subject ID":"-", "Sample ID":"C063", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C063","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Never","BMI":"25.7","Age":"61.9","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"1"} }, { "Subject ID":"-", "Sample ID":"C064", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C064","Sample description":"Sarcomatoid","Gender":"Male","Race":"White","Smoker":"Never","BMI":"18.5","Age":"55.6","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"4","Tumor Width":"5.5"} }, { "Subject ID":"-", "Sample ID":"C065", "Factors":{"Factor":"Unknown"}, "Additional sample data":{"RAW_FILE_NAME":"C065","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Current","BMI":"29.4","Age":"67","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"Unknown","Tumor Width":"6"} }, { "Subject ID":"-", "Sample ID":"C066", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C066","Sample description":"Cancer (Other)","Gender":"Female","Race":"Black/AA","Smoker":"Current","BMI":"17.4","Age":"56.6","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"3","Tumor Width":"6"} }, { "Subject ID":"-", "Sample ID":"C070", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C070","Sample description":"Papillary RCC","Gender":"Female","Race":"Black/AA","Smoker":"Former","BMI":"31.3","Age":"76.2","Metastatic":"No","SubTypes":"Papillary","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"3.8"} }, { "Subject ID":"-", "Sample ID":"C096", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C096","Sample description":"Clear Cell Papillary","Gender":"Male","Race":"Black/AA","Smoker":"Never","BMI":"21.7","Age":"66.3","Metastatic":"No","SubTypes":"Chromophobe","Nuclear Grade":"3","Grade":"High","Stage":"1","Tumor Width":"3.5"} }, { "Subject ID":"-", "Sample ID":"C097", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C097","Sample description":"Clear Cell Papillary","Gender":"Female","Race":"Black/AA","Smoker":"Never","BMI":"30.5","Age":"64.3","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"4","Tumor Width":"7.7"} }, { "Subject ID":"-", "Sample ID":"C099", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C099","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"Black/AA","Smoker":"Former","BMI":"36.8","Age":"58","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"4","Tumor Width":"10.2"} }, { "Subject ID":"-", "Sample ID":"C101", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C101","Sample description":"Cancer (Other)","Gender":"Female","Race":"Black/AA","Smoker":"Never","BMI":"28.5","Age":"32.6","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"1.7"} }, { "Subject ID":"-", "Sample ID":"C102", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C102","Sample description":"Papillary RCC","Gender":"Female","Race":"White","Smoker":"Current","BMI":"26.3","Age":"60.2","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"1","Tumor Width":"5"} }, { "Subject ID":"-", "Sample ID":"C086", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C086","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Never","BMI":"26.2","Age":"52.3","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"4","Tumor Width":"11"} }, { "Subject ID":"-", "Sample ID":"C083", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C083","Sample description":"Cancer (Other)","Gender":"Male","Race":"Black/AA","Smoker":"Former","BMI":"29","Age":"76.7","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"1.4"} }, { "Subject ID":"-", "Sample ID":"C084", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C084","Sample description":"Cancer (Other)","Gender":"Male","Race":"White","Smoker":"Never","BMI":"30.6","Age":"60.4","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"2.1"} }, { "Subject ID":"-", "Sample ID":"C073", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C073","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Never","BMI":"38","Age":"62.1","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"4","Grade":"High","Stage":"3","Tumor Width":"18"} }, { "Subject ID":"-", "Sample ID":"C095", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C095","Sample description":"Papillary RCC","Gender":"Male","Race":"Black/AA","Smoker":"Never","BMI":"21.7","Age":"72.4","Metastatic":"No","SubTypes":"Clear Cell Papillary","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"1"} }, { "Subject ID":"-", "Sample ID":"C074", "Factors":{"Factor":"Unknown"}, "Additional sample data":{"RAW_FILE_NAME":"C074","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Never","BMI":"31","Age":"74.9","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"-","Tumor Width":"8.4"} }, { "Subject ID":"-", "Sample ID":"C076", "Factors":{"Factor":"Unknown"}, "Additional sample data":{"RAW_FILE_NAME":"C076","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Never","BMI":"31","Age":"71.7","Metastatic":"No","SubTypes":"Clear Cell Papillary","Nuclear Grade":"Unknown","Grade":"Unknown","Stage":"Unknown","Tumor Width":"Unknown"} }, { "Subject ID":"-", "Sample ID":"C072", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C072","Sample description":"Chromophobe carcinoma","Gender":"Female","Race":"White","Smoker":"Never","BMI":"29.7","Age":"36.7","Metastatic":"Yes","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"4","Tumor Width":"2"} }, { "Subject ID":"-", "Sample ID":"C077", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C077","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Former","BMI":"25","Age":"69.2","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"2"} }, { "Subject ID":"-", "Sample ID":"C078", "Factors":{"Factor":"Late"}, "Additional sample data":{"RAW_FILE_NAME":"C078","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"White","Smoker":"Former","BMI":"25","Age":"81.1","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"3","Grade":"High","Stage":"3","Tumor Width":"4.7"} }, { "Subject ID":"-", "Sample ID":"C079", "Factors":{"Factor":"Unknown"}, "Additional sample data":{"RAW_FILE_NAME":"C079","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"Black/AA","Smoker":"Never","BMI":"29","Age":"45.8","Metastatic":"No","SubTypes":"Unclassified","Nuclear Grade":"Unknown","Grade":"Unknown","Stage":"Unknown","Tumor Width":"2"} }, { "Subject ID":"-", "Sample ID":"C085", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C085","Sample description":"Cancer (Other)","Gender":"-","Race":"-","Smoker":"Never","BMI":"21.5","Age":"80","Metastatic":"No","SubTypes":"Papillary","Nuclear Grade":"3","Grade":"High","Stage":"1","Tumor Width":"2.5"} }, { "Subject ID":"-", "Sample ID":"C091", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C091","Sample description":"Papillary RCC","Gender":"Female","Race":"White","Smoker":"Current","BMI":"31.6","Age":"61.6","Metastatic":"No","SubTypes":"Papillary","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"5.5"} }, { "Subject ID":"-", "Sample ID":"C087", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C087","Sample description":"Cancer (Other)","Gender":"Female","Race":"Black/AA","Smoker":"Current","BMI":"23.6","Age":"60.3","Metastatic":"No","SubTypes":"Papillary","Nuclear Grade":"2","Grade":"Low","Stage":"2","Tumor Width":"10"} }, { "Subject ID":"-", "Sample ID":"C089", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C089","Sample description":"Cancer (Other)","Gender":"Female","Race":"Black/AA","Smoker":"Never","BMI":"30","Age":"39.7","Metastatic":"No","SubTypes":"Papillary","Nuclear Grade":"3","Grade":"High","Stage":"2","Tumor Width":"10.6"} }, { "Subject ID":"-", "Sample ID":"C081", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C081","Sample description":"Pure Clear Cell Cancer","Gender":"Female","Race":"White","Smoker":"Never","BMI":"30.9","Age":"61.2","Metastatic":"No","SubTypes":"Clear Cell Papillary","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"2.2"} }, { "Subject ID":"-", "Sample ID":"C082", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C082","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"Black/AA","Smoker":"Never","BMI":"30.7","Age":"59.8","Metastatic":"No","SubTypes":"Clear Cell Papillary","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"3.9"} }, { "Subject ID":"-", "Sample ID":"C092", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C092","Sample description":"Papillary RCC","Gender":"Male","Race":"White","Smoker":"Never","BMI":"31","Age":"38.2","Metastatic":"No","SubTypes":"Pure Clear Cell","Nuclear Grade":"2","Grade":"Low","Stage":"2","Tumor Width":"8.2"} }, { "Subject ID":"-", "Sample ID":"C093", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C093","Sample description":"Papillary RCC","Gender":"Female","Race":"White","Smoker":"Never","BMI":"34.6","Age":"53.7","Metastatic":"No","SubTypes":"Unclassified","Nuclear Grade":"3","Grade":"High","Stage":"2","Tumor Width":"8.2"} }, { "Subject ID":"-", "Sample ID":"C088", "Factors":{"Factor":"Early"}, "Additional sample data":{"RAW_FILE_NAME":"C088","Sample description":"Pure Clear Cell Cancer","Gender":"Male","Race":"Black/AA","Smoker":"Former","BMI":"31.4","Age":"62.3","Metastatic":"No","SubTypes":"Papillary","Nuclear Grade":"2","Grade":"Low","Stage":"1","Tumor Width":"2.2"} } ], "COLLECTION":{"COLLECTION_SUMMARY":"Urine samples were collected at the Emory University Hospital","COLLECTION_PROTOCOL_FILENAME":"2_Collection_protocol_RCC_AUG2021.docx","SAMPLE_TYPE":"Urine"}, "TREATMENT":{"TREATMENT_SUMMARY":"There were no treatment in the study, urine samples of healthy subjects and renal cell carcinoma patients were collected."}, "SAMPLEPREP":{"SAMPLEPREP_SUMMARY":"Urine’s samples were prepared for both NMR and MS experiments","SAMPLEPREP_PROTOCOL_FILENAME":"3_Sample preparation protocol_RCC_AUG2021.docx","PROCESSING_STORAGE_CONDITIONS":"-80℃"}, "CHROMATOGRAPHY":{"CHROMATOGRAPHY_TYPE":"HILIC","INSTRUMENT_NAME":"Q Exactive HF","COLUMN_NAME":"Waters Acquity UPLC BEH HILIC (2.1 x 75 mm, 1.7 µm)"}, "ANALYSIS":{"ANALYSIS_TYPE":"MS","LABORATORY_NAME":"Fernandez Lab (Georgia Tech)"}, "MS":{"INSTRUMENT_NAME":"Thermo Q Exactive HF hybrid Orbitrap","INSTRUMENT_TYPE":"Orbitrap","MS_TYPE":"ESI","ION_MODE":"POSITIVE","MS_COMMENTS":"--","MS_RESULTS_FILE":"ST001923_AN003125_Results.txt UNITS:AU Has m/z:Yes Has RT:Yes RT units:Minutes"} }