#METABOLOMICS WORKBENCH STUDY_ID:ST000245 ANALYSIS_ID:AN000383 PROJECT_ID:PR000198
VERSION             	1
CREATED_ON          	2016-09-17
#PROJECT
PR:PROJECT_TITLE                 	Metabolism of muscle proteins in type I diabetic mice
PR:PROJECT_SUMMARY               	Comparison of Short Chain Acyl-carnitines in treated diabetic, untreated
PR:PROJECT_SUMMARY               	and control mouse soleus muscle
PR:INSTITUTE                     	Mayo Clinic
PR:DEPARTMENT                    	Endocrine Research
PR:LABORATORY                    	Nair Lab
PR:LAST_NAME                     	Nair
PR:FIRST_NAME                    	Sree
PR:ADDRESS                       	Rochester, MN
PR:EMAIL                         	nair.sree@mayo.edu
PR:PHONE                         	507-255-2969
#STUDY
ST:STUDY_TITLE                   	Acyl-Carnitine Analysis in mouse soleus muscle
ST:STUDY_SUMMARY                 	Comparison of Short Chain Acyl-carnitines in treated diabetic, untreated
ST:STUDY_SUMMARY                 	and control mouse soleus muscle
ST:INSTITUTE                     	University of Michigan
ST:DEPARTMENT                    	Biomedical Research Core Facilities
ST:LABORATORY                    	Metabolomics core
ST:LAST_NAME                     	Kachman
ST:FIRST_NAME                    	Maureen
ST:ADDRESS                       	6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
ST:EMAIL                         	mkachman@umich.edu
ST:PHONE                         	-
ST:NUM_GROUPS                    	3
ST:TOTAL_SUBJECTS                	19
#SUBJECT
SU:SUBJECT_TYPE                  	Animal
SU:SUBJECT_SPECIES               	Mus musculus
SU:TAXONOMY_ID                   	10090
SU:SPECIES_GROUP                 	Mammal
#SUBJECT_SAMPLE_FACTORS:         	SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Additional sample data
SUBJECT_SAMPLE_FACTORS           	SU0004260	S00015067	status:control	
SUBJECT_SAMPLE_FACTORS           	SU0004261	S00015068	status:control	
SUBJECT_SAMPLE_FACTORS           	SU0004262	S00015069	status:control	
SUBJECT_SAMPLE_FACTORS           	SU0004263	S00015070	status:control	
SUBJECT_SAMPLE_FACTORS           	SU0004264	S00015071	status:control	
SUBJECT_SAMPLE_FACTORS           	SU0004265	S00015072	status:control	
SUBJECT_SAMPLE_FACTORS           	SU0004266	S00015073	status:control	
SUBJECT_SAMPLE_FACTORS           	SU0004267	S00015074	status:Treated diabetic	
SUBJECT_SAMPLE_FACTORS           	SU0004268	S00015075	status:Treated diabetic	
SUBJECT_SAMPLE_FACTORS           	SU0004269	S00015076	status:Treated diabetic	
SUBJECT_SAMPLE_FACTORS           	SU0004270	S00015077	status:Treated diabetic	
SUBJECT_SAMPLE_FACTORS           	SU0004271	S00015078	status:Treated diabetic	
SUBJECT_SAMPLE_FACTORS           	SU0004272	S00015079	status:untreated diabetic	
SUBJECT_SAMPLE_FACTORS           	SU0004273	S00015080	status:untreated diabetic	
SUBJECT_SAMPLE_FACTORS           	SU0004274	S00015081	status:untreated diabetic	
SUBJECT_SAMPLE_FACTORS           	SU0004275	S00015082	status:untreated diabetic	
SUBJECT_SAMPLE_FACTORS           	SU0004276	S00015083	status:untreated diabetic	
SUBJECT_SAMPLE_FACTORS           	SU0004277	S00015084	status:untreated diabetic	
SUBJECT_SAMPLE_FACTORS           	SU0004278	S00015085	status:untreated diabetic	
#COLLECTION
CO:COLLECTION_SUMMARY            	-
CO:SAMPLE_TYPE                   	Muscles
#TREATMENT
TR:TREATMENT_SUMMARY             	-
#SAMPLEPREP
SP:SAMPLEPREP_SUMMARY            	-
SP:SAMPLEPREP_PROTOCOL_FILENAME  	Acyl-carnitines_analysis_protocol-CR-MK-20150528.docx
#CHROMATOGRAPHY
CH:CHROMATOGRAPHY_TYPE           	Reversed phase
CH:INSTRUMENT_NAME               	Agilent 1200
CH:COLUMN_NAME                   	Waters Acquity HSS T3 (50 x 2.1mm, 1.8um)
CH:METHODS_ID                    	AQM050
CH:METHODS_FILENAME              	QM-004-Xbridg2mm_ACar+_MRM-Insert.m.zip
#ANALYSIS
AN:ANALYSIS_TYPE                 	MS
AN:LABORATORY_NAME               	MRC2 (University of Michigan)
AN:ACQUISITION_PARAMETERS_FILE   	QM-004-Xbridg2mm_ACar+_MRM-Insert.m.zip
AN:PROCESSING_PARAMETERS_FILE    	EX00315-acyl-carnitines-quant.m.zip
#MS
MS:MS_COMMENTS                   	-
MS:INSTRUMENT_NAME               	Agilent 6490 QQQ
MS:INSTRUMENT_TYPE               	Triple quadrupole
MS:MS_TYPE                       	ESI
MS:ION_MODE                      	POSITIVE
#MS_METABOLITE_DATA
MS_METABOLITE_DATA:UNITS         	pmol/mg tissue
MS_METABOLITE_DATA_START
Samples	S00015067	S00015068	S00015070	S00015071	S00015072	S00015073	S00015074	S00015075	S00015076	S00015077	S00015078	S00015079	S00015081	S00015082	S00015083	S00015084	S00015085
Factors	status:control	status:control	status:control	status:control	status:control	status:control	status:Treated diabetic	status:Treated diabetic	status:Treated diabetic	status:Treated diabetic	status:Treated diabetic	status:untreated diabetic	status:untreated diabetic	status:untreated diabetic	status:untreated diabetic	status:untreated diabetic	status:untreated diabetic
3-hydroxylauroylcarnitine	0.0002	0.0000	0.0002	0.0003	0.0004	0.0001	0.0006	0.0103	0.0002	0.0007	0.0003	0.0001	0.0000	0.0000	0.0002	0.0582	0.0615
3-Hydroxylinoleoylcarnitine	0.1478	0.4369	0.2336	0.4417	0.7451	0.1825	0.6872	1.1109	0.5990	0.5111	0.9401	0.2862	0.9023	0.2508	0.5497	0.3298	0.2158
3-hydroxymyristoylcarnitine	0.0389	0.0678	0.0654	0.0885	0.1777	0.0266	0.1190	0.2703	0.0553	0.1068	0.1219	0.1012	0.3247	0.1206	0.1952	0.0888	0.1112
3-Hydroxypalmitoylcarnitine	0.0016	0.0037	0.0025	0.0037	0.0102	0.0015	0.0063	0.0136	0.0041	0.0045	0.0059	0.0048	0.0095	0.0033	0.0098	0.0071	0.0032
Acetylcarnitine	107.2794	109.9590	166.9060	113.3923	143.6717	89.5402	114.8338	109.3963	84.2060	148.9747	159.0289	230.9135	294.0512	206.8433	394.1840	360.1519	147.5054
arachidonoylcarnitine	0.0333	0.1005	0.1168	0.0909	0.1268	0.0585	0.1096	0.1675	0.1436	0.1983	0.1059	0.0852	0.2401	0.1719	0.1531	0.0899	0.1094
butyrylcarnitine	3.2046	4.4962	4.0153	1.7713	15.5363	2.6298	8.2220	16.0830	6.7678	6.9494	7.8913	7.0221	13.8863	5.7767	13.3849	8.6608	5.7131
Decanoylcarnitine	0.0655	0.3344	0.3919	0.1251	1.1506	0.2568	0.5718	1.3918	0.6198	0.8837	0.9634	0.4737	0.9968	0.6076	0.7034	0.4321	0.4120
decenoylcarnitine	0.0260	0.2564	0.1580	0.0284	0.4801	0.1733	0.4773	0.8396	0.5387	0.5201	0.5857	0.2324	0.4273	0.2809	0.2787	0.2336	0.1119
Dodecenoylcarnitine	0.0229	0.1207	0.1181	0.0439	0.3435	0.0725	0.1875	0.5111	0.2071	0.2634	0.3609	0.1131	0.3607	0.1665	0.2206	0.1437	0.1209
Glutarylcarnitine	0.0581	0.0552	0.0676	0.0419	0.3122	0.0305	0.1459	0.2263	0.1004	0.1205	0.1906	0.1213	0.1998	0.1545	0.2831	0.2517	0.1261
Hexanoylcarnitine	0.2319	1.1715	1.3623	0.6770	4.5567	0.9469	2.2613	7.7782	2.6063	3.7057	2.9263	1.5965	3.0760	1.9346	2.1864	1.3317	1.5027
icosadienoylcarnitine	0.1527	0.7366	0.2935	0.5477	1.3943	0.1855	0.5858	2.7290	2.0964	0.4714	3.4048	0.4762	0.8284	0.3128	1.1228	0.4655	0.1966
Icosanoylcarnitine																	
icosatrienoylcarnitine	0.0124	0.0592	0.0408	0.0526	0.0784	0.0164	0.0638	0.1362	0.1921	0.0814	0.2708	0.0406	0.0995	0.0526	0.0995	0.0385	0.0243
icoseneoylcarnitine	0.1318	0.4842	0.2556	0.6581	1.1046	0.1000	0.4199	1.3170	1.0834	0.3795	1.4901	0.3734	0.7140	0.3822	0.6949	0.2151	0.2426
isovalerylcarnitine	0.2518	0.2736	0.2645	0.1528	2.3170	0.5505	1.3497	2.7155	0.6101	0.4531	0.8265	0.4296	0.5627	0.5738	0.8530	0.7274	0.3624
lauroylcarnitine	0.0449	0.3461	0.3615	0.1999	1.0550	0.1890	0.4626	1.6523	0.7588	0.8098	0.8783	0.5084	1.4746	0.6530	0.6961	0.3458	0.5197
L-Carnitine	256.2252	174.3435	313.3616	193.1498	194.4122	275.7497	501.1227	261.2026	226.5943	499.3420	260.8330	354.8385	547.1150	673.9478	650.4375	653.8281	387.6479
Linoelaidyl carnitine	0.2297	4.1237	3.6459	2.9795	8.8434	3.5840	8.9993	22.0615	20.9990	6.2049	22.4761	1.7973	5.7598	2.7221	2.7037	2.5200	1.4212
myristoylcarnitine	0.1433	1.3672	1.3247	1.1023	3.1599	0.7123	2.1194	5.1046	3.5393	2.6616	3.6061	1.5988	5.6129	2.0811	2.1633	1.0774	1.4990
octanoylcarnitine	0.0506	0.3581	0.4021	0.1453	0.9687	0.2883	0.6473	1.7931	0.8610	1.0160	0.9895	0.4617	0.9094	0.5903	0.6504	0.3968	0.4166
Octenoylcarnitine	0.0691	0.1735	0.2443	0.1386	0.3453	0.2703	0.7390	0.4307	0.5188	0.7745	0.6569	0.3058	0.3812	0.4546	0.3752	0.4295	0.2621
Oleoylcarnitine	0.6572	5.7690	5.6176	9.7825	12.8779	4.2673	10.9204	23.6733	21.9608	9.5591	23.2925	3.1317	10.5314	4.6259	4.7628	3.6448	2.8133
Palmitoleylcarnitine	0.0728	0.9032	0.7637	0.6823	1.8901	0.4565	1.3713	3.6429	2.9257	1.4383	2.7769	0.6125	2.5991	0.7628	0.9912	0.5420	0.5489
palmitoylcarnitine	0.3995	3.3749	3.1395	5.4772	8.5737	2.2938	6.9842	14.4471	16.5470	6.3445	15.6988	2.9644	10.4619	4.9069	3.9029	2.3081	2.4840
propionylcarnitine	2.2783	2.0503	2.2779	0.9438	6.9644	2.9670	3.4938	4.7587	1.8858	3.9501	4.1635	4.9262	3.0737	7.1471	8.3920	8.5474	3.8547
Stearoylcarnitine	0.4749	1.9146	1.3699	3.1650	5.6532	1.6388	6.4441	7.7372	12.1866	4.0740	10.8711	1.9527	4.1018	3.6211	2.8200	1.2421	1.0920
Tetradecadiencarnitine	0.0566	0.7740	0.5778	0.1276	1.2657	0.4159	1.1097	2.6014	1.8554	1.3638	2.0896	0.4604	1.1789	0.6375	0.6731	0.5519	0.4299
Tetradecenoylcarnitine	0.0971	1.1502	0.9870	0.4880	2.5956	0.6392	1.4778	4.2647	2.4997	2.4099	2.5054	0.9303	2.8096	1.1011	1.3420	0.8174	0.9899
MS_METABOLITE_DATA_END
#METABOLITES
METABOLITES_START
metabolite_name	moverz_quant	ri	ri_type	pubchem_id	inchi_key	kegg_id	other_id	other_id_type
3-hydroxylauroylcarnitine				71464535			C12-OH	UM_Target_ID
3-Hydroxylinoleoylcarnitine				78076335			C18:2-OH	UM_Target_ID
3-hydroxymyristoylcarnitine				71464541			C14-OH	UM_Target_ID
3-Hydroxypalmitoylcarnitine				71464553			C16-OH	UM_Target_ID
Acetylcarnitine				1		C02571	C2	UM_Target_ID
arachidonoylcarnitine				53477832			C20:4	UM_Target_ID
butyrylcarnitine				213144		C02862	C4	UM_Target_ID
Decanoylcarnitine				11953821		C03299	C10:0	UM_Target_ID
decenoylcarnitine				54074509			C10:1	UM_Target_ID
Dodecenoylcarnitine				53481671			C12:1	UM_Target_ID
Glutarylcarnitine				53481622			C5:0-DC	UM_Target_ID
Hexanoylcarnitine				6426853			C6:0	UM_Target_ID
icosadienoylcarnitine				71464509			C20:2	UM_Target_ID
Icosanoylcarnitine				53477833			C20	UM_Target_ID
icosatrienoylcarnitine							C20:3	UM_Target_ID
icoseneoylcarnitine				71464507			C20:1	UM_Target_ID
isovalerylcarnitine				6426851			C5:0	UM_Target_ID
lauroylcarnitine				10427569			C12:0	UM_Target_ID
L-Carnitine				288			L-Carnitine	UM_Target_ID
Linoelaidyl carnitine				53477834			C18:2	UM_Target_ID
myristoylcarnitine				53477791			C14:0	UM_Target_ID
octanoylcarnitine				123701			C8:0	UM_Target_ID
Octenoylcarnitine				71464472			C8:1	UM_Target_ID
Oleoylcarnitine				6441392			C18:1	UM_Target_ID
Palmitoleylcarnitine				71464547			C16:1	UM_Target_ID
palmitoylcarnitine				11953816		C02990	C16:0	UM_Target_ID
propionylcarnitine				188824		C03017	C3	UM_Target_ID
Stearoylcarnitine				52922056			C18:0	UM_Target_ID
Tetradecadiencarnitine				71464539			C14:2	UM_Target_ID
Tetradecenoylcarnitine				22833575			C14:1	UM_Target_ID
METABOLITES_END
#END