#METABOLOMICS WORKBENCH varyc_20210210_112150 DATATRACK_ID:2470 STUDY_ID:ST001704 ANALYSIS_ID:AN002776 PROJECT_ID:PR001090
VERSION             	1
CREATED_ON             	February 17, 2021, 1:40 pm
#PROJECT
PR:PROJECT_TITLE                 	Sclerostin antibody increases trabecular bone and bone mechanical properties by
PR:PROJECT_TITLE                 	increasing osteoblast activity damaged by whole-body irradiation in mice
PR:PROJECT_TYPE                  	Proteomics and Lipidomics basic research
PR:PROJECT_SUMMARY               	A mouse model study to test the hypothesis that treatment with anti-sclerostin
PR:PROJECT_SUMMARY               	antibody (Scl-Ab) would attenuate the adverse effects of irradiation by
PR:PROJECT_SUMMARY               	increasing bone volume and decreasing BM adipose tissue (BMAT), resulting in
PR:PROJECT_SUMMARY               	better quality bone.
PR:INSTITUTE                     	Mainehealth
PR:LAST_NAME                     	Vary
PR:FIRST_NAME                    	Calvin
PR:ADDRESS                       	81 Research Drive, Scarborough, ME, USA 04074
PR:EMAIL                         	varyc@mmc.org
PR:PHONE                         	2073968148
PR:FUNDING_SOURCE                	NIH
#STUDY
ST:STUDY_TITLE                   	Sclerostin antibody increases trabecular bone and bone mechanical properties by
ST:STUDY_TITLE                   	increasing osteoblast activity damaged by whole-body irradiation in mice
ST:STUDY_TYPE                    	Basic research
ST:STUDY_SUMMARY                 	Irradiation therapy causes bone deterioration and increased risk for
ST:STUDY_SUMMARY                 	skeletal-related events. Irradiation interferes with trabecular architecture
ST:STUDY_SUMMARY                 	through increased osteoclastic activity, decreased osteoblastic activity, and
ST:STUDY_SUMMARY                 	increased adipocyte expansion in the bone marrow (BM), which further compounds
ST:STUDY_SUMMARY                 	bone-related disease. Neutralizing antibodies to sclerostin (Scl-Ab) increase
ST:STUDY_SUMMARY                 	bone mass and strength by increasing bone formation and reducing bone
ST:STUDY_SUMMARY                 	resorption. We hypothesized that treatment with Scl-Ab would attenuate the
ST:STUDY_SUMMARY                 	adverse effects of irradiation by increasing bone volume and decreasing BM
ST:STUDY_SUMMARY                 	adipose tissue (BMAT), resulting in better quality bone. In this study,
ST:STUDY_SUMMARY                 	12-week-old female C57BL/6J mice were exposed to 6 Gy whole-body irradiation or
ST:STUDY_SUMMARY                 	were non-irradiated, then administered Scl-Ab (25 mg/kg) or vehicle weekly for 5
ST:STUDY_SUMMARY                 	weeks. Femoral µCT analysis confirmed that the overall effect of IR
ST:STUDY_SUMMARY                 	significantly decreased trabecular bone volume/total volume (Tb.BV/TV) (2-way
ST:STUDY_SUMMARY                 	ANOVA, p<0.0001) with a -43.8% loss in Tb.BV/TV in the IR control group. Scl-Ab
ST:STUDY_SUMMARY                 	independently increased Tb.BV/TV by 3.07-fold in non-irradiated and 3.6-fold in
ST:STUDY_SUMMARY                 	irradiated mice (2-way ANOVA, p<0.0001). Irradiation did not affect cortical
ST:STUDY_SUMMARY                 	parameters, although Scl-Ab increased cortical thickness and area significantly
ST:STUDY_SUMMARY                 	in both irradiated and non-irradiated mice (2-way ANOVA, p<0.0001). Femoral
ST:STUDY_SUMMARY                 	mechanical testing confirmed Scl-Ab significantly increased bending rigidity and
ST:STUDY_SUMMARY                 	ultimate moment independently of irradiation (2-way ANOVA, p<0.0001). Static and
ST:STUDY_SUMMARY                 	dynamic histomorphometry of the femoral metaphysis revealed osteoblast vigor,
ST:STUDY_SUMMARY                 	not number, was significantly increased in the irradiated mice treated with
ST:STUDY_SUMMARY                 	Scl-Ab. Systemic alterations were assessed through serum lipidomic analysis,
ST:STUDY_SUMMARY                 	which showed that Scl-Ab normalized lipid profiles in the irradiated group. This
ST:STUDY_SUMMARY                 	data supports the theory of sclerostin as a novel contributor to the regulation
ST:STUDY_SUMMARY                 	of osteoblast activity after irradiation. Overall, our data support the
ST:STUDY_SUMMARY                 	hypothesis that Scl-Ab ameliorates the deleterious effects of whole-body
ST:STUDY_SUMMARY                 	irradiation on bone and adipose tissue in a mouse model. Our findings suggest
ST:STUDY_SUMMARY                 	that future research into localized and systemic therapies after irradiation
ST:STUDY_SUMMARY                 	exposure is warranted.
ST:INSTITUTE                     	Mainehealth
ST:LAST_NAME                     	Vary
ST:FIRST_NAME                    	Calvin
ST:ADDRESS                       	81 Research Drive
ST:EMAIL                         	varyc@mmc.org
ST:PHONE                         	2073968148
#SUBJECT
SU:SUBJECT_TYPE                  	Mammal
SU:SUBJECT_SPECIES               	Mus musculus
SU:TAXONOMY_ID                   	10090
SU:GENOTYPE_STRAIN               	C57BL/6J
SU:AGE_OR_AGE_RANGE              	12-17 weeks
SU:GENDER                        	Female
#SUBJECT_SAMPLE_FACTORS:         	SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Raw file names and additional sample data
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_C100_1	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_C100_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_C100_2	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_C100_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_C101_1	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_C101_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_C101_2	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_C101_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_C107_1	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_C107_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_C107_2	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_C107_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_C133_1	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_C133_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_C133_2	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_C133_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_C135_1	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_C135_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_C135_2	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_C135_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_C136_1	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_C136_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_C136_2	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_C136_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_SA121_1	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_SA121_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_SA121_2	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_SA121_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_SA123_1	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_SA123_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_SA123_2	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_SA123_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_SA127_1	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_SA127_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_SA127_2	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_SA127_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_SA152_1	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_SA152_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_SA152_2	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_SA152_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_SA153_1	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_SA153_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_SA153_2	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_SA153_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_SA158_1	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_SA158_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D35-IR_SA158_2	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D35-IR_SA158_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_C100_1	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_C100_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_C100_2	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_C100_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_C101_1	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_C101_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_C101_2	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_C101_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_C107_1	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_C107_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_C107_2	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_C107_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_C133_1	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_C133_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_C133_2	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_C133_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_C135_1	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_C135_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_C135_2	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_C135_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_C136_1	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_C136_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_C136_2	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_C136_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_SA121_1	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_SA121_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_SA121_2	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_SA121_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_SA123_1	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_SA123_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_SA123_2	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_SA123_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_SA127_1	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_SA127_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_SA127_2	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_SA127_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_SA152_1	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_SA152_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_SA152_2	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_SA152_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_SA153_1	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_SA153_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_SA153_2	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_SA153_2
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_SA158_1	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_SA158_1
SUBJECT_SAMPLE_FACTORS           	-	posMSMSALL-SC-D3-IR_SA158_2	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=posMSMSALL-SC-D3-IR_SA158_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_C100_1	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_C100_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_C100_2	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_C100_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_C101_1	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_C101_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_C101_2	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_C101_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_C107_1	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_C107_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_C107_2	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_C107_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_C133_1	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_C133_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_C133_2	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_C133_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_C135_1	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_C135_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_C135_2	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_C135_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_C136_1	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_C136_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_C136_2	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_C136_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_SA121_1	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_SA121_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_SA121_2	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_SA121_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_SA123_1	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_SA123_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_SA123_2	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_SA123_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_SA127_1	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_SA127_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_SA127_2	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_SA127_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_SA152_1	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_SA152_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_SA152_2	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_SA152_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_SA153_1	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_SA153_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_SA153_2	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_SA153_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_SA158_1	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_SA158_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D35-IR_SA158_2	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D35-IR_SA158_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_C100_1	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_C100_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_C100_2	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_C100_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_C101_1	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_C101_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_C101_2	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_C101_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_C107_1	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_C107_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_C107_2	Treatment:IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_C107_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_C133_1	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_C133_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_C133_2	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_C133_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_C135_1	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_C135_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_C135_2	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_C135_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_C136_1	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_C136_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_C136_2	Treatment:IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_C136_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_SA121_1	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_SA121_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_SA121_2	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_SA121_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_SA123_1	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_SA123_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_SA123_2	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_SA123_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_SA127_1	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_SA127_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_SA127_2	Treatment:Non-IR Control	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_SA127_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_SA152_1	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_SA152_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_SA152_2	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_SA152_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_SA153_1	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_SA153_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_SA153_2	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_SA153_2
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_SA158_1	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_SA158_1
SUBJECT_SAMPLE_FACTORS           	-	negMSMSALL-SC-D3-IR_SA158_2	Treatment:Non-IR + Scl-Ab	Strain=C57BL/6J; RAW_FILE_NAME=negMSMSALL-SC-D3-IR_SA158_2
#COLLECTION
CO:COLLECTION_SUMMARY            	Lipidomic analyses were performed on mouse serum (n=3) collected through
CO:COLLECTION_SUMMARY            	submandibular and terminal blood collections. Blood samples were extracted (10%
CO:COLLECTION_SUMMARY            	of total body weight) and allowed to clot for 60 minutes at room temperature at
CO:COLLECTION_SUMMARY            	which point the samples were centrifuged for 15 minutes at 12,000 RCF. The upper
CO:COLLECTION_SUMMARY            	phase containing serum was transferred to a new, sterile microcentrifuge tube
CO:COLLECTION_SUMMARY            	and frozen at -80°C.
CO:SAMPLE_TYPE                   	Blood (serum)
CO:COLLECTION_METHOD             	submandibular and terminal blood collection
CO:COLLECTION_FREQUENCY          	Day 3 and Day 35
CO:STORAGE_CONDITIONS            	-80℃
CO:COLLECTION_VIALS              	sterile microcentrifuge tube
CO:STORAGE_VIALS                 	sterile microcentrifuge tube
#TREATMENT
TR:TREATMENT_SUMMARY             	Forty female C57BL/6J mice (Jackson Laboratory, Bar Harbor, ME, USA), 12 weeks
TR:TREATMENT_SUMMARY             	of age, were randomly split between two cohorts; Irradiated (IR) and
TR:TREATMENT_SUMMARY             	Non-Irradiated (Non-IR) (n=20) and were used for all experiments. Two sub-lethal
TR:TREATMENT_SUMMARY             	doses of cesium-137 (Cs-137) whole-body irradiation (2x 3 Gy; total of 6 Gy)
TR:TREATMENT_SUMMARY             	with an exposure time of 3.72 minutes per mouse (total of 7.44 minutes) were
TR:TREATMENT_SUMMARY             	administered 4 hours apart to the IR mice (n=20) on Day 0. Within each cohort,
TR:TREATMENT_SUMMARY             	mice were sub-divided into treatment groups; Vehicle and Scl-Ab VI (25 mg/kg)
TR:TREATMENT_SUMMARY             	(supplied by Amgen Inc/UCB Pharma) (n=10/per treatment). All mice were
TR:TREATMENT_SUMMARY             	administered either a sterile phosphate buffered saline (PBS) vehicle control or
TR:TREATMENT_SUMMARY             	Scl-Ab (25 mg/kg), once weekly via subcutaneous injections for a duration of 5
TR:TREATMENT_SUMMARY             	weeks, starting on Day 0. No adverse effects were observed after the
TR:TREATMENT_SUMMARY             	administration of Scl-Ab. All experimental studies and procedures involving mice
TR:TREATMENT_SUMMARY             	were performed in accordance with protocols approved by the governing
TR:TREATMENT_SUMMARY             	Institutional Animal Care and Use Committee (IACUC). Additional Study Design and
TR:TREATMENT_SUMMARY             	Drug Treatment information can be found in the Supplemental Material.
TR:TREATMENT                     	Neutralizing antibodies to sclerostin (Scl-Ab)
TR:TREATMENT_ROUTE               	subcutaneous injections
TR:TREATMENT_DOSE                	25 mg/kg
TR:TREATMENT_DOSEDURATION        	once weekly for 5 weeks
TR:TREATMENT_VEHICLE             	sterile phosphate buffered saline (PBS) vehicle control
TR:TREATMENT_COMPOUND            	Scl-Ab VI (supplied by Amgen Inc/UCB Pharma)
#SAMPLEPREP
SP:SAMPLEPREP_SUMMARY            	Three 12 µL serum aliquots per treatment (representative of individual mice)
SP:SAMPLEPREP_SUMMARY            	were provided to the MMCRI Proteomics and Lipidomics Core Facility for analysis.
SP:SAMPLEPREP_SUMMARY            	The individual samples were sub-divided into technical replicates, which were
SP:SAMPLEPREP_SUMMARY            	then averaged together. Lipid extracts were dissolved in
SP:SAMPLEPREP_SUMMARY            	methanol/dichloromethane for mass spectrometry (MS) analysis. Lipidomic analyses
SP:SAMPLEPREP_SUMMARY            	were completed via 5600 TripleTOF mass spectrometer (Sciex, Framingham, MA) and
SP:SAMPLEPREP_SUMMARY            	downstream analyses, including t-tests and principal component analyses (PCAs),
SP:SAMPLEPREP_SUMMARY            	were completed utilizing MarkerView Software (Sciex). PCAs were performed with
SP:SAMPLEPREP_SUMMARY            	no weighting, Pareto scaling, and supervised data analysis. Lipids were analyzed
SP:SAMPLEPREP_SUMMARY            	using a global, bias-free lipid profiling acquisition technique (MS/MSALL).
SP:PROCESSING_STORAGE_CONDITIONS 	-80℃
SP:EXTRACT_STORAGE               	-80℃
#CHROMATOGRAPHY
CH:CHROMATOGRAPHY_SUMMARY        	Direct infusion
CH:CHROMATOGRAPHY_TYPE           	None (Direct infusion)
CH:INSTRUMENT_NAME               	Sciex TripleTOF 5600
CH:COLUMN_NAME                   	none
#ANALYSIS
AN:ANALYSIS_TYPE                 	MS
AN:LABORATORY_NAME               	Proteomics and Lipidomics Core
AN:OPERATOR_NAME                 	Calvin Vary
#MS
MS:INSTRUMENT_NAME               	ABI Sciex 5600 TripleTOF
MS:INSTRUMENT_TYPE               	QTOF
MS:MS_TYPE                       	ESI
MS:ION_MODE                      	NEGATIVE
MS:MS_COMMENTS                   	Direct infusion positive and negative mode MSMSALL workflow Sciex-LipidView;
MS:MS_COMMENTS                   	Sciex-MarkerView
MS:MS_RESULTS_FILE               	ST001704_AN002776_Results.txt	UNITS:m/z	Has m/z:No	Has RT:No	RT units:No RT data
#END