RefMet Compound Details

RefMet ID, RefMet name, exact mass and formula
RefMet IDRM0139054
RefMet nameCyanidin 3-(6''-malonylglucoside)
Alternative nameCyanidin 3-O-(6-O-malonyl-beta-D-glucoside)
Systematic name2-(3,4-dihydroxyphenyl)-5,7-dihydroxychromenium-3-yl 6-O-(carboxyacetyl)-beta-D-glucopyranoside
SynonymsPubChem Synonyms
Exact mass535.108785 (neutral)
Calculate m/z:   
View other RefMet entries with this exact (neutral) mass:   +/- 0.05 amu   +/- 0.1 amu   +/- 0.2 amu   +/- 0.5 amu
FormulaC24H23O14View other entries in RefMet with this formula
Molecular descriptors
Molfile54398 (Download molfile/View MW Metabolite Database details)
InChIInChI=1S/C24H22O14/c25-10-4-13(27)11-6-16(23(36-15(11)5-10)9-1-2-12(26)14(28)3-9)37-24-22(34)21(33)20(32)17(38-24)8-35-19(31)7-18(
29)30/h1-6,17,20-22,24,32-34H,7-8H2,(H4-,25,26,27,28,29,30)/p+1/t17-,20-,21+,22-,24-/m1/s1
InChIKeyROQLTZUOXIQBDO-JZWLZXDTSA-OView other enantiomers/diastereomers of this metabolite in RefMet
SMILESc1cc(c(cc1c1c(cc2c(cc(cc2[o+]1)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@@H](COC(=O)CC(=O)O)O1)O)O)O)O)O
Run Tanimoto similarity search (with similarity coefficient >=0.6)
Chemical/Biochemical Classification
Super ClassPolyketides
Main ClassFlavonoids
Sub ClassAnthocyanidins
Distribution of Cyanidin 3-(6''-malonylglucoside) in NMDR studies
SpeciesPlot Species distribution
Sample sourcePlot Sample source(tissue) distribution
PlatformPlatform (MS/NMR) used for detection
ChromatographyChromatography methods used for detection
StudiesNMDR Studies reporting Cyanidin 3-(6''-malonylglucoside)
External Links
Pubchem CID443915
LIPID MAPSLMPK12010135
ChEBI ID31442
KEGG IDC12643
Spectral data for Cyanidin 3-(6''-malonylglucoside) standards
NP-MRD ID(NMR)View NMR spectra
Structural annotation level
Annotation level1   (1:Known structure; 2:Known regiochemistry; 3:Partial structure; 4:Sum-composition)
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