#METABOLOMICS WORKBENCH araskind_20151217_9109411_mwtab.txt DATATRACK_ID:463 efahy_20151228_123430 STUDY_ID:ST000300 ANALYSIS_ID:AN000478 PROJECT_ID:PR000241
VERSION             	1
CREATED_ON             	December 28, 2015, 12:34 pm
#PROJECT
PR:PROJECT_TITLE                 	Identifiying Colonization Factors of Campylobacter jejuni
PR:PROJECT_SUMMARY               	Using next-generation approaches to identify both bacterial and host factors
PR:PROJECT_SUMMARY               	that influence colonization of the chicken gastrointestinal tract by C. jejuni
PR:INSTITUTE                     	University of Michigan
PR:DEPARTMENT                    	Microbiology and Immunology
PR:LABORATORY                    	DiRita Lab
PR:LAST_NAME                     	DiRita
PR:FIRST_NAME                    	Victor
PR:ADDRESS                       	Ann Arbor, MI
PR:EMAIL                         	vdirita@umich.edu
PR:PHONE                         	734-936-3804
#STUDY
ST:STUDY_TITLE                   	Chicken/C. jejuni Bile Acid Study
ST:STUDY_SUMMARY                 	Cecal samples were isolated directly from the ceca of dissected chickens that
ST:STUDY_SUMMARY                 	were either experimentally infected with C. jejuni DRH212 or mock-infected with
ST:STUDY_SUMMARY                 	PBS. Cecal samples were re-suspended in Life Technologies 1X PBS based on weight
ST:STUDY_SUMMARY                 	of sample (1 ml/100 mg = 10-1 dilution) and stored at -80C.
ST:INSTITUTE                     	University of Michigan
ST:DEPARTMENT                    	Biomedical Research Core Facilities
ST:LABORATORY                    	Metabolomics core
ST:LAST_NAME                     	Kachman
ST:FIRST_NAME                    	Maureen
ST:ADDRESS                       	6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
ST:EMAIL                         	mkachman@med.umich.edu
ST:PHONE                         	(734) 232-8175
ST:NUM_GROUPS                    	2
ST:TOTAL_SUBJECTS                	4
#SUBJECT
SU:SUBJECT_TYPE                  	Animal
SU:SUBJECT_SPECIES               	Gallus gallus
SU:TAXONOMY_ID                   	9031
#SUBJECT_SAMPLE_FACTORS:         	SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Additional sample data
SUBJECT_SAMPLE_FACTORS           	SU0011938	S00017774	C. jejuni Infection:yes	
SUBJECT_SAMPLE_FACTORS           	SU0011938	S00017775	C. jejuni Infection:yes	
SUBJECT_SAMPLE_FACTORS           	SU0011938	S00017776	C. jejuni Infection:no	
SUBJECT_SAMPLE_FACTORS           	SU0011938	S00017777	C. jejuni Infection:no	
#COLLECTION
CO:COLLECTION_SUMMARY            	-
CO:SAMPLE_TYPE                   	Cecum
#TREATMENT
TR:TREATMENT_SUMMARY             	-
#SAMPLEPREP
SP:SAMPLEPREP_SUMMARY            	-
SP:SAMPLEPREP_PROTOCOL_FILENAME  	Bile Acids-20150305.docx
#CHROMATOGRAPHY
CH:CHROMATOGRAPHY_TYPE           	Reversed phase
CH:INSTRUMENT_NAME               	Agilent 1260
CH:COLUMN_NAME                   	Waters Acquity BEH C18 (50 x 2mm, 1.7um)
CH:METHODS_FILENAME              	2014-07-30-Bile_acid-full-BEH-C18-I.m
#ANALYSIS
AN:ANALYSIS_TYPE                 	MS
AN:ANALYSIS_PROTOCOL_FILE        	Bile Acids-20150305.docx
#MS
MS:MS_COMMENTS                   	-
MS:INSTRUMENT_TYPE               	Triple quadrupole
MS:MS_TYPE                       	ESI
MS:ION_MODE                      	NEGATIVE
MS:INSTRUMENT_NAME               	Agilent 6410 QQQ
MS:INSTRUMENT_NAME               	Agilent 6410 QQQ
#MS_METABOLITE_DATA
MS_METABOLITE_DATA:UNITS         	uM
MS_METABOLITE_DATA_START
Samples	S00017774	S00017775	S00017776	S00017777
Factors	C. jejuni Infection:yes	C. jejuni Infection:yes	C. jejuni Infection:no	C. jejuni Infection:no
a-Muricholic acid	0	56.81936	0	0
b-Muricholic acid	34.2	33.8	74.8	40.1
Cholic acid	756.1	2153	1722	1311
Chenodeoxycholic acid	0	0	0	0
Deoxycholic acid	63.7	1980	241	0
Glychocholic acid	0	0	0	0
Glycochenodeoxycholic acid	0	0	0	0
Glycodeoxycholic acid	44.1	39.1	39.3	41.9
Glycohyodeoxycholic acid	0	0	0	0
Glycolithocholic acid	0	0	0	0
Glycoursodeoxycholic acid	0	0	0	0
g-Muricholic acid (hyocholic acid)	306.1	256.3	465.2	792.1
Hyodeoxycholic acid	0	0	0	0
Taurocholic acid	1009.8	356.2	119	150.4
Taurochenodeoxycholic acid	437.8	466.4	523.9	123
Taurodeoxycholic acid	38.8	12.1	9.4	8.5
Tauro-hyodeoxycholic acid	86.1	32.4	32.2	33.2
Taurolithocolic acid	162.5	272.2	163.1	153.5
Tauroursodeoxycholic acid	87.6	34.1	34	34.1
Ursodeoxycholic acid	0	0	0	0
w-Muricholic acid	115	152.6	268.7	596.2
MS_METABOLITE_DATA_END
#METABOLITES
METABOLITES_START
metabolite_name	Local ID	PubChem CID
a-Muricholic acid	aMCA	53477700
b-Muricholic acid	bMCA	5283853
Cholic acid	CA	221493
Chenodeoxycholic acid	CDCA	10133
Deoxycholic acid	DCA	6742
Glychocholic acid	GCA	10140
Glycochenodeoxycholic acid	GCDCA	9548796
Glycodeoxycholic acid	GDCA	18602029
Glycohyodeoxycholic acid	GHDCA	114611
Glycolithocholic acid	GLCA	115245
Glycoursodeoxycholic acid	GUDCA	12310288
g-Muricholic acid (hyocholic acid)	HCA	92805
Hyodeoxycholic acid	HDCA	16219478
Taurocholic acid	TCA	6675
Taurochenodeoxycholic acid	TCDCA	54608447
Taurodeoxycholic acid	TDCA	10594
Tauro-hyodeoxycholic acid	THDCA	9848818
Taurolithocolic acid	TLCA	10595
Tauroursodeoxycholic acid	TUDCA	9848818
Ursodeoxycholic acid	UDCA	54285959
w-Muricholic acid	wMCA	5283851
METABOLITES_END
#END