#METABOLOMICS WORKBENCH YohkoYoshida_20211013_205201 DATATRACK_ID:2889 STUDY_ID:ST001961 ANALYSIS_ID:AN003196 PROJECT_ID:PR001248 VERSION 1 CREATED_ON October 26, 2021, 5:21 pm #PROJECT PR:PROJECT_TITLE Metabolomics of brown adipose tissue in murine heart failure model PR:PROJECT_TYPE untargeted CE-TOF/MS metabolomic profiling PR:PROJECT_SUMMARY Brown adipose tissue (BAT) was initially characterised as a thermogenic organ, PR:PROJECT_SUMMARY and recent studies have suggested it plays a crucial role in maintaining PR:PROJECT_SUMMARY systemic metabolic health. In this project, we demonstrated that alteration of PR:PROJECT_SUMMARY BAT function contributes to development of heart failure through disorientation PR:PROJECT_SUMMARY in choline metabolism. To analyze the changes of metabolites, we conducted the PR:PROJECT_SUMMARY CE-TOF/MS analysis using BAT from TAC (thoracic aortic constriction) or PR:PROJECT_SUMMARY sham-operated mice. In BAT from TAC-operated mice, we found increase of choline PR:PROJECT_SUMMARY and glycerophosphorylcholine and a decrease of phosphorylcholine, suggesting PR:PROJECT_SUMMARY that BAT dysfunction induces the disorientation of choline metabolism. PR:INSTITUTE Juntendo University PR:DEPARTMENT Department of Cardiovascular Biology and Medicine PR:LAST_NAME Yoshida PR:FIRST_NAME Yohko PR:ADDRESS 2-1-1, Hongo, Bunkyo-ku, Tokyo, Tokyo, 1138421, Japan PR:EMAIL yohko105@yahoo.co.jp PR:PHONE +81-3-3813-3111 #STUDY ST:STUDY_TITLE Metabolomics of brown adipose tissue in murine heart failure model ST:STUDY_TYPE untargeted CE-TOF/MS metabolomic profiling ST:STUDY_SUMMARY Brown adipose tissue (BAT) was initially characterised as a thermogenic organ, ST:STUDY_SUMMARY and recent studies have suggested it plays a crucial role in maintaining ST:STUDY_SUMMARY systemic metabolic health. In this project, we demonstrated that alteration of ST:STUDY_SUMMARY BAT function contributes to development of heart failure through disorientation ST:STUDY_SUMMARY in choline metabolism. To analyze the changes of metabolites, we conducted the ST:STUDY_SUMMARY CE-TOF/MS analysis using BAT from TAC (thoracic aortic constriction) or ST:STUDY_SUMMARY sham-operated mice. In BAT from TAC-operated mice, we found increase of choline ST:STUDY_SUMMARY and glycerophosphorylcholine and a decrease of phosphorylcholine, suggesting ST:STUDY_SUMMARY that BAT dysfunction induces the disorientation of choline metabolism. ST:INSTITUTE Juntendo University ST:DEPARTMENT Department of Cardiovascular Biology and Medicine ST:LAST_NAME Yoshida ST:FIRST_NAME Yohko ST:ADDRESS 2-1-1, Hongo, Bunkyo-ku, Tokyo, Tokyo, 1138421, Japan ST:EMAIL yohko105@yahoo.co.jp ST:PHONE +81-3-3813-3111 #SUBJECT SU:SUBJECT_TYPE Mammal SU:SUBJECT_SPECIES Mus musculus SU:TAXONOMY_ID 10090 SU:GENDER Male #SUBJECT_SAMPLE_FACTORS: SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Raw file names and additional sample data SUBJECT_SAMPLE_FACTORS - - Group:- Organ=-; RAW_FILE_NAME=Anion; RAW_FILE_NAME=Cation SUBJECT_SAMPLE_FACTORS - 1B Group:Sham-operated Organ=mouse brown adipose tissue (BAT); RAW_FILE_NAME=1 B.d; RAW_FILE_NAME=B1.d SUBJECT_SAMPLE_FACTORS - 2B Group:Sham-operated Organ=mouse brown adipose tissue (BAT); RAW_FILE_NAME=2 B.d; RAW_FILE_NAME=B2.d SUBJECT_SAMPLE_FACTORS - 3B Group:Sham-operated Organ=mouse brown adipose tissue (BAT); RAW_FILE_NAME=3 B.d; RAW_FILE_NAME=B3.d SUBJECT_SAMPLE_FACTORS - 4B Group:Sham-operated Organ=mouse brown adipose tissue (BAT); RAW_FILE_NAME=4 B.d; RAW_FILE_NAME=B4.d SUBJECT_SAMPLE_FACTORS - 6B Group:Sham-operated Organ=mouse brown adipose tissue (BAT); RAW_FILE_NAME=6 B.d; RAW_FILE_NAME=B6.d SUBJECT_SAMPLE_FACTORS - 7B Group:TAC-operated Organ=mouse brown adipose tissue (BAT); RAW_FILE_NAME=7 B.d; RAW_FILE_NAME=B7.d SUBJECT_SAMPLE_FACTORS - 9B Group:TAC-operated Organ=mouse brown adipose tissue (BAT); RAW_FILE_NAME=9 B.d; RAW_FILE_NAME=B9.d SUBJECT_SAMPLE_FACTORS - 10B Group:TAC-operated Organ=mouse brown adipose tissue (BAT); RAW_FILE_NAME=10 B.d; RAW_FILE_NAME=B10.d SUBJECT_SAMPLE_FACTORS - 11B Group:TAC-operated Organ=mouse brown adipose tissue (BAT); RAW_FILE_NAME=11 B.d; RAW_FILE_NAME=B11.d SUBJECT_SAMPLE_FACTORS - 12B Group:TAC-operated Organ=mouse brown adipose tissue (BAT); RAW_FILE_NAME=12 B.d; RAW_FILE_NAME=B12.d #COLLECTION CO:COLLECTION_SUMMARY Brown adipose tissue (BAT) was excised from the mice and immediately frozen in CO:COLLECTION_SUMMARY liquid nitrogen. CO:SAMPLE_TYPE Adipose tissue #TREATMENT TR:TREATMENT_SUMMARY All mice were randomly allocated for surgical procedures under blinded TR:TREATMENT_SUMMARY condition. Thoracic aortic constriction (TAC) was performed in 11-week-old male TR:TREATMENT_SUMMARY mice, and sample was collected 2 weeks after surgery. Sham-operated mice TR:TREATMENT_SUMMARY underwent the same procedures, except for aortic constriction. #SAMPLEPREP SP:SAMPLEPREP_SUMMARY To extract metabolites, 40~50mg snap-frozen samples were completely homogenized SP:SAMPLEPREP_SUMMARY by Shake Master NEO (Bio Medical Science) in 500uL of methanol containing SP:SAMPLEPREP_SUMMARY L-methionine sulfone (Wako 502-76641), methionine sulfone (MES, Dojindo SP:SAMPLEPREP_SUMMARY 349-01623), and D-camphor-10-sulfonic acid sodium salt (CSA, Wako 037-01032) SP:SAMPLEPREP_SUMMARY (all at 20 μM). After adding CHCl3 (500 μl) and distilled water (200 μl) with SP:SAMPLEPREP_SUMMARY thorough mixing, centrifugation was performed at 4,600g for 15 min at 4°C. Then SP:SAMPLEPREP_SUMMARY the aqueous layer (300 μl) was collected and transferred to a 5-kDa cutoff SP:SAMPLEPREP_SUMMARY filter (UltrafreeMC-PLHCC; Human Metabolome Technologies, UFC3LCCNB-HMT). SP:SAMPLEPREP_SUMMARY Centrifugation was performed at 9,100g for 3 hours at 20°C, after which the SP:SAMPLEPREP_SUMMARY filtrate was centrifugally concentrated and dissolved in 50μl distilled water SP:SAMPLEPREP_SUMMARY containing reference compounds (200 μM each of 3-aminopyrrolidine and SP:SAMPLEPREP_SUMMARY trimesate). #CHROMATOGRAPHY CH:CHROMATOGRAPHY_TYPE None (Direct infusion) CH:INSTRUMENT_NAME none CH:COLUMN_NAME none #ANALYSIS AN:ANALYSIS_TYPE MS #MS MS:INSTRUMENT_NAME Agilent 6224 TOF MS:INSTRUMENT_TYPE Single quadrupole MS:MS_TYPE ESI MS:ION_MODE NEGATIVE MS:MS_COMMENTS Automatic recalibration of each acquired spectrum was performed using reference MS:MS_COMMENTS masses of reference standards ([13C isotopic ion of deprotonated acetic acid MS:MS_COMMENTS dimer (2CH3COOH - H)]-, m/z 120.03841), and ([Hexakis + deprotonated acetic acid MS:MS_COMMENTS (CH3COOH - H)]-, m/z 680.03554). Exact mass data were acquired at a rate of 1.5 MS:MS_COMMENTS spectra/s over a 50-1000 m/z range. Raw CE-TOFMS data were processed using MS:MS_COMMENTS Master Hands ver. 2.17.0.8 software for the quantification of metabolites. #MS_METABOLITE_DATA MS_METABOLITE_DATA:UNITS nmol/g MS_METABOLITE_DATA_START Samples 1B 2B 3B 4B 6B 7B 9B 10B 11B 12B Factors Group:Sham-operated Group:Sham-operated Group:Sham-operated Group:Sham-operated Group:Sham-operated Group:TAC-operated Group:TAC-operated Group:TAC-operated Group:TAC-operated Group:TAC-operated G1P 11 7.9 4.8 9.4 3.9 4.6 3.4 1.5 6.6 3.3 G6P 203 75 44 149 26 47 7.5 5.4 99 6.2 F6P 36 14 10 24 6.0 7.7 1.8 N.D. 20 2.2 F1,6P 54 62 30 48 34 24 38 29 42 30 DHAP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Glycerophosphate 459 588 302 394 477 299 499 454 472 449 G3P N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2,3-DPG 44 79 30 34 70 36 70 39 52 59 3PG 41 23 17 18 23 14 24 17 20 26 2PG 9.0 5.1 2.0 3.9 N.D. 2.7 N.D. N.D. 3.8 N.D. PEP 4.3 2.3 2.0 N.D. 2.7 2.2 2.2 N.D. 2.4 N.D. Pyruvate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Lactate 4145 2803 2465 2807 2472 2462 3010 2314 2479 2593 Glucosamine 6-phosphate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Acetyl CoA 28 22 13 18 18 12 17 11 22 16 Citrate 279 159 171 168 158 156 197 134 150 172 cis-Aconitate 11 7.8 7.7 8.4 7.7 7.2 8.2 6.0 7.4 7.7 Isocitrate 38 33 29 27 29 30 28 19 26 23 2-Oxoglutarate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2-Hydroxyglutarate 17 7.5 16 11 18 8.6 11 12 7.4 14 Succinyl CoA 2.2 1.7 N.D. 2.2 3.2 2.2 4.7 N.D. 1.5 N.D. Succinate 981 879 945 774 1007 739 669 450 646 773 Fumarate 182 104 117 103 127 126 158 122 64 107 Malate 500 300 381 339 417 377 397 280 201 246 6-Phosphogluconate 4.0 4.3 3.2 3.7 3.9 3.6 3.8 N.D. 4.4 3.4 Ru5P 46 54 41 35 49 37 61 43 43 55 R5P N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. S7P 7.5 7.0 6.6 5.6 8.2 6.7 5.7 5.8 7.8 3.8 Glyoxylate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Propionate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Glycolate N.D. N.D. 58 N.D. N.D. N.D. N.D. 42 N.D. N.D. Crotonate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Butanoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 3-Hydroxypropionate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Methanesulfonate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Tiglate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2-Oxobutyrate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Pentanoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 3-Methylbutanoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Malonate 5.3 4.6 2.9 2.5 6.3 20 6.7 5.1 7.1 5.2 2-Hydroxyisobutyrate 2.7 4.1 3.7 2.5 4.5 2.9 3.8 2.5 4.5 3.6 2-Hydroxybutyrate 7.1 4.1 N.D. 4.8 7.9 6.1 8.6 5.5 7.2 5.6 3-Hydroxybutyrate 202 153 139 141 235 233 251 213 272 230 (Methylthio)acetate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Glycerate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Pyrrole-2-carboxylate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Methyl sulfate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2-Furoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 3-Acetylacrylate 2-Oxoisopentanoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 4-Oxopentanoate 7.8 9.3 8.8 7.7 11 9.6 8.9 9.1 8.2 9.1 Hexanoate N.D. N.D. N.D. N.D. 4.4 3.2 N.D. N.D. N.D. N.D. 2-Hydroxypentanoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Benzoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Nicotinate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 1-Aminoethylphosphonate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2-Aminoethylphosphonate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Isethionate 3.4 2.0 2.0 3.5 3.2 N.D. 2.5 N.D. N.D. 2.5 Barbiturate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 5-Oxoproline 66 16 19 17 23 14 27 14 18 18 Itaconate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Citraconate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 4-Methyl-2-oxopentanoate 6.6 1.7 3.0 2.6 3.5 2.3 2.1 2.4 2.4 3.8 4-Oxohexanoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 4-Acetylbutyrate 2.7 N.D. 2.1 2.5 2.9 N.D. N.D. N.D. 3.1 N.D. Heptanoate N.D. N.D. N.D. N.D. 3.0 N.D. N.D. N.D. N.D. N.D. N-Acetyl-beta-alanine N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Glutarate 4.8 4.2 4.0 4.3 4.0 8.1 6.6 5.7 4.5 5.1 3-Ureidopropionate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2-Hydroxy-4-methylpentanoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 6-Hydroxyhexanoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Threonate 105 151 124 124 177 126 104 89 136 123 o-Hydroxybenzoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. p-Hydroxybenzoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. m-Hydroxybenzoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Phosphonoacetate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Carbamoylphosphate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Ethanolamine phosphate 320 284 265 249 301 240 298 245 235 258 2-Thiopheneacetate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Octanoate N.D. N.D. N.D. 1.6 3.0 4.9 N.D. N.D. N.D. N.D. Adipate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. threo-beta-methylaspartate + Glu 705 891 484 553 754 526 589 551 762 784 4-Methylthio-2-oxobutyrate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Citramalate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. trans-Cinnamate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Tartrate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Benzoylformate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 3-Phenylpropionate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2-Hydroxyphenylacetate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. p-Hydroxyphenylacetate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Cysteine sulfinate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2,5-Dihydroxybenzoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Orotate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2,4-Dihydroxypyrimidine-5-carboxylate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Dihydroorotate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2-Oxooctanoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Pelargonate 7.9 12 13 8.9 15 17 9.8 9.8 12 7.3 2-Oxoadipate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Pimelate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2-Hydroxyoctanoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N-Formylaspartate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 3-Hydroxy-3-methylglutarate N.D. N.D. N.D. 0.74 N.D. N.D. 1.3 N.D. N.D. N.D. Phenylpyruvate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. p-Coumarate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. o-Coumarate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Terephthalate 2.1 2.0 1.5 1.1 1.9 2.0 2.0 1.5 2.5 1.4 Phthalate 1.5 0.59 N.D. 0.43 0.57 0.47 0.85 0.53 1.5 0.45 3-Phenyllactate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 3-(2-Hydroxyphenyl)propionate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 3-(4-Hydroxyphenyl)propionate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2,3-Pyridinedicarboxylate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Urate 38 25 24 30 30 25 29 27 24 34 4-Hydroxymandelate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Cysteate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2-Amino-3-phosphonopropionate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Decanoate N.D. 2.2 3.7 1.7 4.1 3.2 N.D. 2.5 3.1 3.2 2-Quinolinecarboxylate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N-Acetylleucine N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Phenyl phosphate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. trans-Aconitate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Shikimate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N-Acetylaspartate 26 21 10 17 16 20 32 12 12 12 Carbamoylaspartate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Allantoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2-Isopropylmalate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N-Formylmethionine N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Hippurate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Homovanillate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 4-Pyridoxate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Serine O-sulfate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. O-Phosphoserine N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Undecanoate N.D. N.D. N.D. 0.67 N.D. N.D. N.D. N.D. N.D. N.D. Azelate 4.7 2.5 2.2 2.0 3.1 2.6 3.7 2.3 2.4 1.8 10-Hydroxydecanoate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N-Acetylglutamate 12 15 14 17 21 1.9 12 8.3 7.1 22 N-Carbamylglutamate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N-Acetylmethionine N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Quinate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Phenaceturate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Glucuronate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. trans-4-Hydroxy-3-methoxycinnamate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. o-Hydroxyhippurate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Gluconate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Syringate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 4-Hydroxy-3-methoxymandelate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Dodecanoate 11 19 19 13 22 20 15 19 21 17 Cysteine S-sulfate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Sebacate 0.48 N.D. N.D. 0.38 0.27 0.42 0.59 0.37 N.D. N.D. 3-Indolebutyrate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Xanthurenate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N-Acetylphenylalanine N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Benzylsuccinate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Saccharate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Mucate 4.9 5.1 5.4 5.3 7.9 6.8 5.4 3.9 5.6 6.6 3-Indoxyl sulfate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 2-Deoxyribose 1-phosphate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Pantothenate 40 41 16 14 30 39 40 35 29 20 Sinapate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Porphobilinogen N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Dodecanedioate 0.41 N.D. N.D. N.D. 0.39 N.D. 0.26 N.D. N.D. N.D. 2-Deoxyglucose 6-phosphate 2.2 2.2 N.D. 1.7 N.D. N.D. 2.1 N.D. N.D. N.D. Biotin N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Sorbitol 6-phosphate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Galacturonate 1-phosphate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N-Acetylmuramate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N-Acetylglucosamine 1-phosphate 4.1 3.1 2.4 2.1 2.7 2.8 5.1 2.9 2.6 3.0 N-Acetylglucosamine 6-phosphate 3.6 3.8 3.1 2.9 3.4 3.5 3.5 4.0 2.1 3.4 2',3'-cCMP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. dCMP N.D. N.D. N.D. N.D. N.D. N.D. 0.72 0.74 0.76 N.D. dUMP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N-Acetylneuraminate 4.0 3.5 3.1 3.1 3.5 2.7 4.9 2.6 1.5 2.5 Ribulose 1,5-diphosphate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 3',5'-Cyclic dAMP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. dTMP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. CMP 20 19 17 17 18 11 17 15 13 17 UMP 189 223 178 171 201 117 193 174 154 195 cAMP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Phytate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. cIMP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. dAMP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. cGMP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 3'-AMP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. AMP 1488 1555 1420 1350 1509 930 1312 1101 1012 1421 IMP 341 393 288 328 254 430 507 500 716 318 Prostaglandin E2 N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Prostaglandin F2alpha N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. GMP 237 246 207 181 220 188 269 207 227 244 XMP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Orotidine 5'-monophosphate 2.4 1.8 N.D. 1.3 N.D. 1.5 N.D. N.D. 1.5 1.2 Digalacturonate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. NADPH 62 46 39 45 45 22 48 36 24 62 CoA 33 33 12 14 15 15 43 23 9.1 25 dCDP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. dUDP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. PRPP 1.5 1.2 N.D. 0.59 N.D. N.D. N.D. N.D. 1.2 N.D. dTDP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. CDP 3.0 1.3 1.1 1.4 1.9 0.97 1.4 0.98 1.3 1.4 UDP 14 4.9 3.5 5.7 7.9 3.6 4.3 3.7 4.8 7.6 Cholate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. dADP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. P1, P4-Di(adenosine-5') tetraphosphate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Isobutyryl CoA 4.9 4.6 3.3 3.6 4.9 4.0 3.9 2.7 4.8 3.2 Trehalose 6-phosphate 2.7 5.1 7.8 6.7 N.D. N.D. 1.9 2.0 N.D. 1.7 Malonyl CoA N.D. N.D. N.D. 1.3 1.8 1.1 N.D. N.D. N.D. N.D. Adenosine 5'-phosphosulfate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Adenosine 3',5'-diphosphate 10 17 11 12 14 5.2 13 12 8.0 8.8 ADP 394 240 198 252 264 177 241 182 220 220 IDP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Folate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. GDP 62 51 43 39 52 31 54 39 44 48 Adenylosuccinate 59 50 52 50 47 38 51 36 20 38 Glycocholate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. dCTP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. dUTP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. dTTP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. CTP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. UTP 12 1.6 N.D. 3.4 1.3 N.D. N.D. N.D. 1.9 1.6 dATP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. dITP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. ATP 640 69 44 164 96 86 66 48 79 81 dGTP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. ITP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. Taurocholate N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. GTP 76 48 27 28 35 21 40 26 35 30 XTP N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. CDP-choline 48 55 40 37 46 30 42 39 40 40 ADP-ribose 26 34 29 25 41 36 30 28 32 31 TDP-glucose N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. UDP-glucose 66 52 48 33 41 41 55 37 41 39 UDP-glucuronate 11 12 13 14 13 6.2 11 13 10 11 ADP-glucose 12 11 8.6 6.6 8.3 9.6 11 8.3 10 8.3 GDP-mannose 11 11 7.8 6.9 9.4 7.9 13 8.2 9.9 9.3 UDP-N-acetylglucosamine 97 91 77 74 87 68 84 72 70 69 CMP-N-acetylneuraminate 12 12 11 9.8 13 7.6 10 9.8 8.5 10 NAD+ 603 549 464 499 605 424 556 463 484 415 Deamido-NAD+ N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. NADH 83 81 66 83 93 58 68 59 56 71 NADP+ 84 91 71 74 82 48 77 54 59 69 FAD 88 91 73 75 82 65 93 71 69 64 MS_METABOLITE_DATA_END #METABOLITES METABOLITES_START metabolite_name RefMet name KEGG ID G1P Glucose 1-phosphate C00103 G6P Glucose 6-phosphate C00092 F6P Fructose 6-phosphate C00085 F1,6P Fructose 1,6-bisphosphate C00354 DHAP Dihydroxyacetone phosphate C00111 Glycerophosphate sn-Glycero-3-phosphate C00093 G3P Glyceraldehyde 3-phosphate C00661 2,3-DPG 2,3-Diphosphoglyceric acid C01159 3PG 3-Phosphoglyceric acid C00197 2PG 2-Phosphoglyceric acid C00631 PEP Phosphoenolpyruvic acid C00074 Pyruvate Pyruvic acid C00022 Lactate Lactic acid C00186 Glucosamine 6-phosphate Glucosamine 6-phosphate C00352 Acetyl CoA Acetyl-CoA C00024 Citrate Citric acid C00158 cis-Aconitate cis-Aconitic acid C00417 Isocitrate Isocitric acid C00311 2-Oxoglutarate Oxoglutaric acid C00026 2-Hydroxyglutarate 2-Hydroxyglutaric acid C02630 Succinyl CoA Succinyl-CoA C00091 Succinate Succinic acid C00042 Fumarate Fumaric acid C00122 Malate Malic acid C00711 6-Phosphogluconate 6-Phosphogluconic acid C00345 Ru5P Ribulose 5-phosphate C00199 R5P Ribose 5-phosphate C00117 S7P Sedoheptulose 7-phosphate C05382 Glyoxylate Glyoxylic acid C00048 Propionate Propionic acid C00163 Glycolate Glycolic acid C00160 Crotonate Crotonic acid C01771 Butanoate Butyric acid C00246 3-Hydroxypropionate Hydroxypropionic acid C01013 Methanesulfonate Methanesulfonic acid C11145 Tiglate Tiglic acid C08279 2-Oxobutyrate 3-Methyl pyruvic acid C00109 Pentanoate Valeric acid C00803 3-Methylbutanoate Isovaleric acid C08262 Malonate Malonic acid C00383 2-Hydroxyisobutyrate 2-Hydroxyisobutyric acid - 2-Hydroxybutyrate 2-Hydroxybutyric acid C05984 3-Hydroxybutyrate 3-Hydroxybutyric acid C01089 (Methylthio)acetate (Methylthio)acetic acid C03173 Glycerate Glyceric acid C00258 Pyrrole-2-carboxylate Pyrrole-2-carboxylic acid C05942 Methyl sulfate Methyl sulfate C02704 2-Furoate 2-Furoic acid C01546 3-Acetylacrylate - C07091 2-Oxoisopentanoate Ketoisovaleric acid C00141 4-Oxopentanoate Levulinic acid - Hexanoate Caproic acid C01585 2-Hydroxypentanoate 2-Hydroxyvaleric acid - Benzoate Benzoic acid C00180 Nicotinate Nicotinic acid C00253 1-Aminoethylphosphonate - C03782 2-Aminoethylphosphonate Ciliatine C03557 Isethionate 2-Hydroxyethanesulfonate C05123 Barbiturate Barbituric acid C00813 5-Oxoproline Pyroglutamic acid C01879 Itaconate Itaconic acid C00490 Citraconate Citraconic acid C02226 4-Methyl-2-oxopentanoate Ketoleucine C00233 4-Oxohexanoate - - 4-Acetylbutyrate 5-Ketocaproic acid C02129 Heptanoate Heptylic acid C17714 N-Acetyl-beta-alanine N-Acetyl-beta-alanine C01073 Glutarate Glutaric acid C00489 3-Ureidopropionate Ureidopropionic acid C02642 2-Hydroxy-4-methylpentanoate 2-Hydroxyisocaproic acid C03264 6-Hydroxyhexanoate 2-Hydroxyhexanoic acid C06103 Threonate Threonic acid C01620 o-Hydroxybenzoate Salicylic acid C00805 p-Hydroxybenzoate 4-Hydroxybenzoic acid C00156 m-Hydroxybenzoate 3-Hydroxybenzoic acid C00587 Phosphonoacetate Phosphonoacetate C05682 Carbamoylphosphate Carbamoylphosphate C00169 Ethanolamine phosphate Phosphoethanolamine C00346 2-Thiopheneacetate 2-Thienylacetic acid C02595 Octanoate Caprylic acid C06423 Adipate Adipic acid C06104 threo-beta-methylaspartate + Glu - C03618 4-Methylthio-2-oxobutyrate 2-Oxo-4-methylthiobutanoic acid C01180 Citramalate Citramalic acid C02614 trans-Cinnamate trans-Cinnamic acid C00423 Tartrate Tartaric acid C00898 Benzoylformate Phenylglyoxylic acid C02137 3-Phenylpropionate Hydrocinnamic acid C05629 2-Hydroxyphenylacetate 2-Hydroxyphenylacetic acid C05852 p-Hydroxyphenylacetate p-Hydroxyphenylacetic acid C00642 Cysteine sulfinate 3-Sulfino-alanine C00606 2,5-Dihydroxybenzoate Gentisic acid C00628 Orotate Orotic acid C00295 2,4-Dihydroxypyrimidine-5-carboxylate Uracil-5-carboxylic acid C03030 Dihydroorotate 4,5-Dihydroorotic acid C00337 2-Oxooctanoate - - Pelargonate Pelargonic acid C01601 2-Oxoadipate Oxoadipic acid C00322 Pimelate Pimelic acid C02656 2-Hydroxyoctanoate 2-Hydroxyoctanoic acid - N-Formylaspartate N-Formyl-aspartic acid C01044 3-Hydroxy-3-methylglutarate 3-Hydroxymethylglutaric acid C03761 Phenylpyruvate Phenylpyruvic acid C00166 p-Coumarate trans-p-Coumaric acid C00811 o-Coumarate trans-o-Coumaric acid C01772 Terephthalate Terephthalic acid C06337 Phthalate Phthalic acid C01606 3-Phenyllactate Phenyllactic acid C05607 3-(2-Hydroxyphenyl)propionate 3-(2-Hydroxyphenyl)propanoic acid C01198 3-(4-Hydroxyphenyl)propionate Desaminotyrosine C01744 2,3-Pyridinedicarboxylate Quinolinic acid C03722 Urate Uric acid C00366 4-Hydroxymandelate 4-Hydroxymandelic acid C11527 Cysteate Cysteic acid C00506 2-Amino-3-phosphonopropionate - C05672 Decanoate Capric acid C01571 2-Quinolinecarboxylate Quinaldic acid C06325 N-Acetylleucine N-Acetylleucine C02710 Phenyl phosphate Phenyl phosphate C02734 trans-Aconitate trans-Aconitic acid C02341 Shikimate Shikimic acid C00493 N-Acetylaspartate N-Acetylaspartic acid C01042 Carbamoylaspartate Carbamoylaspartate C00438 Allantoate Allantoic acid C00499 2-Isopropylmalate 2-Isopropylmalic acid C02504 N-Formylmethionine N-Formylmethionine C03145 Hippurate Hippuric acid C01586 Homovanillate Homovanillic acid C05582 4-Pyridoxate 4-Pyridoxic acid C00847 Serine O-sulfate Serine-O-sulfate C02703 O-Phosphoserine Phosphoserine C01005 Undecanoate Undecylic acid C17715 Azelate Azelaic acid C08261 10-Hydroxydecanoate 10-Hydroxydecanoic acid C02774 N-Acetylglutamate N-Acetylglutamic acid C00624 N-Carbamylglutamate Carglumic acid C05829 N-Acetylmethionine N-Acetylmethionine C02712 Quinate Quinic acid C00296 Phenaceturate Phenylacetylglycine C05598 Glucuronate Glucuronic acid C00191 trans-4-Hydroxy-3-methoxycinnamate trans-Ferulic acid C01494 o-Hydroxyhippurate Salicyluric acid C07588 Gluconate Gluconic acid C00257 Syringate Syringic acid C10833 4-Hydroxy-3-methoxymandelate Vanillylmandelic acid C05584 Dodecanoate Lauric acid C02679 Cysteine S-sulfate Cysteine-S-sulfate C05824 Sebacate Sebacic acid C08277 3-Indolebutyrate 3-Indolebutyric acid C11284 Xanthurenate Xanthurenic acid C02470 N-Acetylphenylalanine N-Acetylphenylalanine C03519 Benzylsuccinate (R)-2-Benzylsuccinic acid C09816 Saccharate Glucaric acid C00818 Mucate Galactaric acid C00879 3-Indoxyl sulfate Indoxyl sulfate - 2-Deoxyribose 1-phosphate - C00672 Pantothenate Pantothenic acid C00864 Sinapate Sinapic acid C00482 Porphobilinogen Porphobilinogen C00931 Dodecanedioate Dodecanedioic acid C02678 2-Deoxyglucose 6-phosphate - C06369 Biotin Biotin C00120 Sorbitol 6-phosphate - C01096 Galacturonate 1-phosphate - C04037 N-Acetylmuramate N-Acetylmuramic acid C02713 N-Acetylglucosamine 1-phosphate N-Acetyl-D-glucosamine 1-phosphate C04501 N-Acetylglucosamine 6-phosphate N-Acetylglucosamine 6-phosphate C00357 2',3'-cCMP 2',3' cyclic CMP C02354 dCMP dCMP C00239 dUMP dUMP C00365 N-Acetylneuraminate N-Acetyl-alpha-neuraminic acid C00270 Ribulose 1,5-diphosphate Ribulose 1,5-bisphosphate C01182 3',5'-Cyclic dAMP - C00968 dTMP dTMP C00364 CMP CMP C00055 UMP UMP C00105 cAMP 3',5' cyclic AMP C00575 Phytate Myo-inositol hexakisphosphate C01204 cIMP - C00943 dAMP dAMP C00360 cGMP 3',5' cyclic GMP C00942 3'-AMP 3'-AMP C01367 AMP AMP C00020 IMP IMP C00130 Prostaglandin E2 PGE2 C00584 Prostaglandin F2alpha PGF2alpha C00639 GMP GMP C00144 XMP XMP C00655 Orotidine 5'-monophosphate Orotidylic acid C01103 Digalacturonate Digalacturonic acid C02273 NADPH NADPH C00005 CoA Coenzyme A C00010 dCDP dCDP C00705 dUDP dUDP C01346 PRPP Phosphoribosyl pyrophosphate C00119 dTDP dTDP C00363 CDP CDP C00112 UDP UDP C00015 Cholate Cholic acid C00695 dADP dADP C00206 P1, P4-Di(adenosine-5') tetraphosphate - C01260 Isobutyryl CoA Isobutyryl-CoA C00630 Trehalose 6-phosphate Trehalose 6-phosphate C00689 Malonyl CoA Malonyl-CoA C00083 Adenosine 5'-phosphosulfate Adenosine phosphosulfate C00224 Adenosine 3',5'-diphosphate Adenosine 3',5'-diphosphate C00054 ADP ADP C00008 IDP IDP C00104 Folate Folic acid C00504 GDP GDP C00035 Adenylosuccinate Adenylsuccinic acid C03794 Glycocholate Glycocholic acid C01921 dCTP dCTP C00458 dUTP dUTP C00460 dTTP dTTP C00459 CTP CTP C00063 UTP UTP C00075 dATP dATP C00131 dITP dITP C01345 ATP ATP C00002 dGTP dGTP C00286 ITP ITP C00081 Taurocholate Taurocholic acid C05122 GTP GTP C00044 XTP Xanthosine 5-triphosphate C00700 CDP-choline Cytidine 5'-diphosphocholine C00307 ADP-ribose ADP-ribose C00301 TDP-glucose dTDP-glucose C00842 UDP-glucose UDP-glucose C00029 UDP-glucuronate UDP-glucuronic acid C00167 ADP-glucose ADP-glucose C00498 GDP-mannose GDP-mannose C00096 UDP-N-acetylglucosamine UDP-N-acetylglucosamine C00043 CMP-N-acetylneuraminate Cytidine monophosphate N-acetylneuraminic acid C00128 NAD+ NAD+ C00003 Deamido-NAD+ Nicotinic acid adenine dinucleotide C00857 NADH NADH C00004 NADP+ NADP+ C00006 FAD FAD C00016 METABOLITES_END #END