#METABOLOMICS WORKBENCH NuriaCG_20240222_040502 DATATRACK_ID:4668 STUDY_ID:ST003135 ANALYSIS_ID:AN005145 PROJECT_ID:PR001948 VERSION 1 CREATED_ON February 29, 2024, 2:04 am #PROJECT PR:PROJECT_TITLE Metabolomic study of T effector and T regulatory cells in severe allergic PR:PROJECT_TITLE patients PR:PROJECT_TYPE MS untargeted analysis combining lipidomics and metabolomics. PR:PROJECT_SUMMARY Metabolism has a profound impact on T cell fate and function. Uncovering the PR:PROJECT_SUMMARY metabolome of circulating human CD4+ T effector memory (Teff) and T regulatory PR:PROJECT_SUMMARY (Treg) cells would enable better understanding of Th2-driven diseases, such as PR:PROJECT_SUMMARY allergy or asthma. Here, we demonstrated that in healthy humans, energy PR:PROJECT_SUMMARY metabolism and functions of memory CD4+ Teff cells mainly relied on amino acids, PR:PROJECT_SUMMARY whereas Treg cells predominantly used fatty acids. Arginine and phenylalanine PR:PROJECT_SUMMARY increased T cell receptorinduced glycolysis and oxidative phosphorylation in PR:PROJECT_SUMMARY total and memory CD4+ T cells, but high levels of phenylalanine limited CD4+ T PR:PROJECT_SUMMARY cell proliferation via disrupting mitochondrial respiration and activation of PR:PROJECT_SUMMARY L-phenylalanine oxidase, IL4I1. Accordingly, lowest levels of phenylalanine were PR:PROJECT_SUMMARY linked with the pathogenic Th2a cells, and impaired Treg cells in patients with PR:PROJECT_SUMMARY the most severe forms of allergies. It all suggests that phenylalanine is a PR:PROJECT_SUMMARY metabolic checkpoint of pathogenic Th2 cells development. PR:INSTITUTE Universidad San Pablo-CEU, CEU Universities PR:DEPARTMENT Química y Bioquímica PR:LAST_NAME Villaseñor PR:FIRST_NAME Alma PR:ADDRESS Urbanización Montepríncipe, n/s, Boadilla del Monte, Madrid, 28003, Spain PR:EMAIL alma.villasenor@ceu.es PR:PHONE 913724750 #STUDY ST:STUDY_TITLE Metabolomic study of T effector and T regulatory cells in severe allergic ST:STUDY_TITLE patients ST:STUDY_SUMMARY Metabolism has a profound impact on T cell fate and function. Uncovering the ST:STUDY_SUMMARY metabolome of circulating human CD4+ T effector memory (Teff) and T regulatory ST:STUDY_SUMMARY (Treg) cells would enable better understanding of Th2-driven diseases, such as ST:STUDY_SUMMARY allergy or asthma. Here, we demonstrated that in healthy humans, energy ST:STUDY_SUMMARY metabolism and functions of memory CD4+ Teff cells mainly relied on amino acids, ST:STUDY_SUMMARY whereas Treg cells predominantly used fatty acids. Arginine and phenylalanine ST:STUDY_SUMMARY increased T cell receptorinduced glycolysis and oxidative phosphorylation in ST:STUDY_SUMMARY total and memory CD4+ T cells, but high levels of phenylalanine limited CD4+ T ST:STUDY_SUMMARY cell proliferation via disrupting mitochondrial respiration and activation of ST:STUDY_SUMMARY L-phenylalanine oxidase, IL4I1. Accordingly, lowest levels of phenylalanine were ST:STUDY_SUMMARY linked with the pathogenic Th2a cells, and impaired Treg cells in patients with ST:STUDY_SUMMARY the most severe forms of allergies. It all suggests that phenylalanine is a ST:STUDY_SUMMARY metabolic checkpoint of pathogenic Th2 cells development. ST:INSTITUTE Universidad San Pablo-CEU, CEU Universities ST:DEPARTMENT Química y Bioquímica ST:LAST_NAME Villaseñor ST:FIRST_NAME Alma ST:ADDRESS Urbanización Montepríncipe, n/s, Boadilla del Monte, Madrid, 28003, Spain ST:EMAIL alma.villasenor@ceu.es ST:PHONE 913724750 #SUBJECT SU:SUBJECT_TYPE Human SU:SUBJECT_SPECIES Homo sapiens SU:TAXONOMY_ID 9606 SU:AGE_OR_AGE_RANGE Adult patients (>18 years old) SU:GENDER Male and female #SUBJECT_SAMPLE_FACTORS: SUBJECT(optional)[tab]SAMPLE[tab]FACTORS(NAME:VALUE pairs separated by |)[tab]Raw file names and additional sample data SUBJECT_SAMPLE_FACTORS A2 A2_Eff_Polar Sample source:PBMCs | Experimental_Group:Non_Allergic | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=A2_Eff_Polar_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=A2_Eff_Polar_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=A2_Eff_Polar_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=A2_Eff_Polar_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS A2 A2_Reg_Polar Sample source:PBMCs | Experimental_Group:Non_Allergic | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=A2_Reg_Polar_Pos_r1.mzML; 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RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS B4 B4_Eff_Lipids Sample source:PBMCs | Experimental_Group:Mild | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=B4_Eff_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=B4_Eff_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=B4_Eff_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=B4_Eff_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS B4 B4_Reg_Lipids Sample source:PBMCs | Experimental_Group:Mild | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=B4_Reg_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=B4_Reg_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=B4_Reg_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=B4_Reg_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C1 C1_Eff_Polar Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=C1_Eff_Polar_Pos_r1.mzML; 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RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C8 C8_Eff_Lipids Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=C8_Eff_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C8_Eff_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C8_Eff_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C8_Eff_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C8 C8_Reg_Lipids Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=C8_Reg_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C8_Reg_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C8_Reg_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C8_Reg_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C9 C9_Eff_Polar Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=C9_Eff_Polar_Pos_r1.mzML; 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RAW_FILE_NAME(RAW_FILE_NAME)=C10_Reg_Polar_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C10_Reg_Polar_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C10_Reg_Polar_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C10 C10_Eff_Lipids Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=C10_Eff_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C10_Eff_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C10_Eff_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C10_Eff_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C10 C10_Reg_Lipids Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=C10_Reg_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C10_Reg_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C10_Reg_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C10_Reg_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C11 C11_Eff_Polar Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=C11_Eff_Polar_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C11_Eff_Polar_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C11_Eff_Polar_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C11_Eff_Polar_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C11 C11_Reg_Polar Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=C11_Reg_Polar_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C11_Reg_Polar_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C11_Reg_Polar_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C11_Reg_Polar_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C11 C11_Eff_Lipids Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=C11_Eff_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C11_Eff_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C11_Eff_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C11_Eff_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C11 C11_Reg_Lipids Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=C11_Reg_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C11_Reg_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C11_Reg_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C11_Reg_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C12 C12_Eff_Polar Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=C12_Eff_Polar_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C12_Eff_Polar_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C12_Eff_Polar_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C12_Eff_Polar_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C12 C12_Reg_Polar Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=C12_Reg_Polar_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C12_Reg_Polar_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C12_Reg_Polar_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C12_Reg_Polar_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C12 C12_Eff_Lipids Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=C12_Eff_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C12_Eff_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C12_Eff_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C12_Eff_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C12 C12_Reg_Lipids Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=C12_Reg_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C12_Reg_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C12_Reg_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C12_Reg_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C13 C13_Eff_Polar Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=C13_Eff_Polar_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C13_Eff_Polar_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C13_Eff_Polar_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C13_Eff_Polar_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C13 C13_Reg_Polar Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=C13_Reg_Polar_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C13_Reg_Polar_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C13_Reg_Polar_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C13_Reg_Polar_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C13 C13_Eff_Lipids Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=C13_Eff_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C13_Eff_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C13_Eff_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C13_Eff_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS C13 C13_Reg_Lipids Sample source:PBMCs | Experimental_Group:Severe | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=C13_Reg_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C13_Reg_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C13_Reg_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=C13_Reg_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC1 QC1_Reg_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC1_Reg_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC1_Reg_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC1 QC1_Reg_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC1_Reg_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC1_Reg_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC2 QC2_Reg_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC2_Reg_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC2_Reg_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC2 QC2_Reg_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC2_Reg_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC2_Reg_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC3 QC3_Reg_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC3_Reg_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC3_Reg_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC3 QC3_Reg_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC3_Reg_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC3_Reg_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC4 QC4_Reg_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC4_Reg_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC4_Reg_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC4 QC4_Reg_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC4_Reg_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC4_Reg_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC5 QC5_Reg_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC5_Reg_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC5_Reg_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC5 QC5_Reg_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC5_Reg_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC5_Reg_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC6 QC6_Reg_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC6_Reg_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC6_Reg_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC6 QC6_Reg_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC6_Reg_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC6_Reg_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC7 QC7_Reg_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC7_Reg_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC7_Reg_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC7 QC7_Reg_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC7_Reg_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC7_Reg_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC8 QC8_Reg_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC8_Reg_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC8_Reg_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC8 QC8_Reg_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC8_Reg_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC8_Reg_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC9 QC9_Reg_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC9_Reg_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC9_Reg_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC9 QC9_Reg_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC9_Reg_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC9_Reg_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC10 QC10_Reg_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC10_Reg_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC10_Reg_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC10 QC10_Reg_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC10_Reg_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC10_Reg_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC12 QC12_Eff_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC12_Eff_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC12_Eff_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC12 QC12_Eff_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC12_Eff_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC12_Eff_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC13 QC13_Eff_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC13_Eff_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC13_Eff_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC13 QC13_Eff_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC13_Eff_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC13_Eff_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC14 QC14_Eff_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC14_Eff_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC14_Eff_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC14 QC14_Eff_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC14_Eff_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC14_Eff_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC15 QC15_Eff_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC15_Eff_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC15_Eff_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC15 QC15_Eff_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC15_Eff_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC15_Eff_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC16 QC16_Eff_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC16_Eff_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC16_Eff_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC16 QC16_Eff_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC16_Eff_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC16_Eff_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC17 QC17_Eff_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC17_Eff_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC17_Eff_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC17 QC17_Eff_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC17_Eff_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC17_Eff_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC18 QC18_Eff_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC18_Eff_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC18_Eff_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC18 QC18_Eff_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC18_Eff_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC18_Eff_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC19 QC19_Eff_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC19_Eff_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC19_Eff_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC19 QC19_Eff_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC19_Eff_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC19_Eff_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC20 QC20_Eff_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC20_Eff_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC20_Eff_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC20 QC20_Eff_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC20_Eff_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC20_Eff_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC21 QC21_Eff_Polar Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=QC21_Eff_Polar_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC21_Eff_Polar_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS QC21 QC21_Eff_Lipids Sample source:PBMCs | Experimental_Group:Quality_Control | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=QC21_Eff_Lipids_Pos.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=QC21_Eff_Lipids_Neg.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA; RAW_FILE_NAME(RAW_FILE_NAME)=NA SUBJECT_SAMPLE_FACTORS Curve_10 Curve_10_Reg_Polar Sample source:PBMCs | Experimental_Group:Cell_Curve | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=Curve_10_Reg_Polar_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_10_Reg_Polar_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_10_Reg_Polar_Pos_r3.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_10_Reg_Polar_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_10_Reg_Polar_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_10_Reg_Polar_Neg_r3.mzML SUBJECT_SAMPLE_FACTORS Curve_10 Curve_10_Reg_Lipids Sample source:PBMCs | Experimental_Group:Cell_Curve | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=Curve_10_Reg_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_10_Reg_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_10_Reg_Lipids_Pos_r3.mzML; 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RAW_FILE_NAME(RAW_FILE_NAME)=Curve_100_Reg_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_100_Reg_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_100_Reg_Lipids_Neg_r3.mzML SUBJECT_SAMPLE_FACTORS Curve_100 Curve_100_Eff_Polar Sample source:PBMCs | Experimental_Group:Cell_Curve | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=Curve_100_Eff_Polar_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_100_Eff_Polar_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_100_Eff_Polar_Pos_r3.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_100_Eff_Polar_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_100_Eff_Polar_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_100_Eff_Polar_Neg_r3.mzML SUBJECT_SAMPLE_FACTORS Curve_100 Curve_100_Eff_Lipids Sample source:PBMCs | Experimental_Group:Cell_Curve | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=Curve_100_Eff_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_100_Eff_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_100_Eff_Lipids_Pos_r3.mzML; 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RAW_FILE_NAME(RAW_FILE_NAME)=Curve_500_Eff_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_500_Eff_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_500_Eff_Lipids_Neg_r3.mzML SUBJECT_SAMPLE_FACTORS Curve_1500 Curve_1500_Eff_Polar Sample source:PBMCs | Experimental_Group:Cell_Curve | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=Curve_1500_Eff_Polar_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_1500_Eff_Polar_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_1500_Eff_Polar_Pos_r3.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_1500_Eff_Polar_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_1500_Eff_Polar_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_1500_Eff_Polar_Neg_r3.mzML SUBJECT_SAMPLE_FACTORS Curve_1500 Curve_1500_Eff_Lipids Sample source:PBMCs | Experimental_Group:Cell_Curve | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=Curve_1500_Eff_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_1500_Eff_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_1500_Eff_Lipids_Pos_r3.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_1500_Eff_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_1500_Eff_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Curve_1500_Eff_Lipids_Neg_r3.mzML SUBJECT_SAMPLE_FACTORS Blank Blank_Reg_Polar Sample source:PBMCs | Experimental_Group:Blank | Cell_Type:Treg | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Reg_Polar_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Reg_Polar_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Reg_Polar_Pos_r3.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Reg_Polar_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Reg_Polar_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Reg_Polar_Neg_r3.mzML SUBJECT_SAMPLE_FACTORS Blank Blank_Reg_Lipids Sample source:PBMCs | Experimental_Group:Blank | Cell_Type:Treg | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Reg_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Reg_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Reg_Lipids_Pos_r3.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Reg_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Reg_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Reg_Lipids_Neg_r3.mzML SUBJECT_SAMPLE_FACTORS Blank Blank_Eff_Polar Sample source:PBMCs | Experimental_Group:Blank | Cell_Type:Teff | Extraction_Method:Polar RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Eff_Polar_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Eff_Polar_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Eff_Polar_Pos_r3.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Eff_Polar_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Eff_Polar_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Eff_Polar_Neg_r3.mzML SUBJECT_SAMPLE_FACTORS Blank Blank_Eff_Lipids Sample source:PBMCs | Experimental_Group:Blank | Cell_Type:Teff | Extraction_Method:Lipidomics RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Eff_Lipids_Pos_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Eff_Lipids_Pos_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Eff_Lipids_Pos_r3.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Eff_Lipids_Neg_r1.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Eff_Lipids_Neg_r2.mzML; RAW_FILE_NAME(RAW_FILE_NAME)=Blank_Eff_Lipids_Neg_r3.mzML #COLLECTION CO:COLLECTION_SUMMARY Whole blood was drawn from the participants into heparin tubes and serum in CO:COLLECTION_SUMMARY silica tubes. Next, PBMCs were isolated using Ficoll Plaque by gradient density CO:COLLECTION_SUMMARY centrifugation according to manufacturer instructions. Isolated PMBCs were then CO:COLLECTION_SUMMARY immediately frozen and kept at -80˚C until analysis. Teff and Treg cell CO:COLLECTION_SUMMARY subpopulations were determined through FlowJo X (v.10.7.1.) and FlowSOM (v.2.6). CO:SAMPLE_TYPE Blood (whole) CO:STORAGE_CONDITIONS -80℃ #TREATMENT TR:TREATMENT_SUMMARY After cell sorting, the only treatment received was the addition of a volume of TR:TREATMENT_SUMMARY 50 uL of MeOH to each sample and then cells were frozen at -80 ºC until TR:TREATMENT_SUMMARY metabolomics and lipidomic analysis. #SAMPLEPREP SP:SAMPLEPREP_SUMMARY Frozen cells in MeOH were thawed at 4˚C. Then a first extraction targeted at SP:SAMPLEPREP_SUMMARY lipid metabolites was performed by adding MTBE to a final concentration of MTBE: SP:SAMPLEPREP_SUMMARY MeOH (1:4). Samples were then sonicated for a total of 15 min at 15W (3 rounds SP:SAMPLEPREP_SUMMARY of 5 min sonication), thoroughly vortexed, and centrifuged for 10 min at 16000 g SP:SAMPLEPREP_SUMMARY to remove any debris. The supernatant was collected. Then a second extraction SP:SAMPLEPREP_SUMMARY took place to obtain the most polar metabolites in the sample. To that extent, SP:SAMPLEPREP_SUMMARY 100 μl of a mixture of H2O:MeOH (1:4) was added and the sample was sonicated SP:SAMPLEPREP_SUMMARY again for a total of 15 min at 15W (3 rounds of 5 min sonication), thoroughly SP:SAMPLEPREP_SUMMARY vortexed and centrifuged for 10 min at 16000 g to remove any debris. The SP:SAMPLEPREP_SUMMARY supernatant was collected. Polar samples were kept at 4 degrees until their SP:SAMPLEPREP_SUMMARY analysis. Extraction solvents were used as a blank and followed the same SP:SAMPLEPREP_SUMMARY procedure as the samples. Quality control (QC) samples were prepared by pooling SP:SAMPLEPREP_SUMMARY equal volumes of samples from the same cell type separately. Additionally, to SP:SAMPLEPREP_SUMMARY select features produced only by cells, a calibration curve was made of Teff or SP:SAMPLEPREP_SUMMARY Treg cells, respectively. Samples were divided into 2 groups depending on the SP:SAMPLEPREP_SUMMARY type of subpopulation they belong to either Teff or Treg, and randomized. SP:EXTRACT_STORAGE -80℃ #CHROMATOGRAPHY CH:CHROMATOGRAPHY_SUMMARY For polar metabolites separation, 2 μL of the sample were injected into a CH:CHROMATOGRAPHY_SUMMARY Zorbax Extend C18 (4.6 × 50 mm, 1.8 μm; Agilent, Waldbronn, Germany), with a CH:CHROMATOGRAPHY_SUMMARY guard column Zorbax Extend C18 (3 × 5 mm, 1.8 μm; Agilent), both maintained at CH:CHROMATOGRAPHY_SUMMARY 60 °C. The flow rate was set at 0.6 mL/min. The elution gradient involved a CH:CHROMATOGRAPHY_SUMMARY mobile phase consisting of: (A) water containing 0.1% of formic acid and (B) CH:CHROMATOGRAPHY_SUMMARY acetonitrile containing 0.1% of formic acid. The initial conditions were set at CH:CHROMATOGRAPHY_SUMMARY 5% phase B for 1 min, which increased linearly to 80% phase B in 7 min. Then in CH:CHROMATOGRAPHY_SUMMARY 4.5 min it increased until 100% of phase. Then the equipment returned to the CH:CHROMATOGRAPHY_SUMMARY initial conditions in 0.5 min, which were held for 3 min for column CH:CHROMATOGRAPHY_SUMMARY reconditioning. CH:CHROMATOGRAPHY_TYPE Reversed phase CH:INSTRUMENT_NAME Agilent 1290 Infinity II CH:COLUMN_NAME Agilent ZORBAX RRHD Extend-C18 (50 x 2.1mm,1.8um) CH:SOLVENT_A water containing 0.1% of formic acid CH:SOLVENT_B acetonitrile containing 0.1% of formic acid CH:FLOW_GRADIENT 0-1 min: 5% B; 1-8 min: linear increase until 80% B; 8-12.5 min: linear increase CH:FLOW_GRADIENT until 100% B. Then the equipment returned to the initial conditions in 0.5 min, CH:FLOW_GRADIENT which were held for 3 min for column reconditioning. CH:FLOW_RATE 0.6 mL/min CH:COLUMN_TEMPERATURE 60 ºC #ANALYSIS AN:ANALYSIS_TYPE MS AN:LABORATORY_NAME Centre of Metabolomics and Bioanalysis (CEMBIO) #MS MS:INSTRUMENT_NAME Agilent 6550 QTOF MS:INSTRUMENT_TYPE QTOF MS:MS_TYPE ESI MS:ION_MODE POSITIVE MS:MS_COMMENTS The Agilent 6550 QTOF mass spectrometer equipped with a dual AJS ESI ion source MS:MS_COMMENTS was set with the following parameters: The capillary voltage was set at 3000 for MS:MS_COMMENTS both polarities. The drying gas flow rate was 12 L/min at 250 °C and gas MS:MS_COMMENTS nebulizer at 52 psi; fragmentor voltage was set at 175 V in ESI+ and 250 in MS:MS_COMMENTS ESI-; skimmer and octupole radio frequency voltages were set to 65 and 750 V, MS:MS_COMMENTS respectively. MS spectra were collected in the centroid mode at a scan rate of 3 MS:MS_COMMENTS spectra/s. The MS detection window was performed in a full scan from 100 to 1200 MS:MS_COMMENTS m/z for both modes. Automatic MS recalibration during batch analysis was carried MS:MS_COMMENTS out by introducing a reference standard into the source via a reference sprayer MS:MS_COMMENTS valve. Reference masses for ESI+ were purine (m/z = 121.0508) and HP-0921 (m/z = MS:MS_COMMENTS 922.0097). MS:MS_RESULTS_FILE ST003135_AN005145_Results.txt UNITS:Peak area Has m/z:Yes Has RT:Yes RT units:Minutes #END