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MB Sample ID: SA000692
| Local Sample ID: | 343813 |
| Subject ID: | SU000015 |
| Subject Type: | Plant |
| Subject Species: | Arabidopsis thaliana |
| Taxonomy ID: | 3702 |
| Genotype Strain: | Wild type Col0: 1 | Wild type Col0: 2 | SAIL_6_G_02 | SALK_024747 | SALK_135268 | SALK_077749 | SALK_114456 | SALK_021832 | SALK_125505 | SALK_022584 | SALK_062847 | SALK_148208 | SALK_016312 | CS24090 | SALK_083600 |
| Species Group: | Plant |
Select appropriate tab below to view additional metadata details:
Subject:
| Subject ID: | SU000015 |
| Subject Type: | Plant |
| Subject Species: | Arabidopsis thaliana |
| Taxonomy ID: | 3702 |
| Genotype Strain: | Wild type Col0: 1 | Wild type Col0: 2 | SAIL_6_G_02 | SALK_024747 | SALK_135268 | SALK_077749 | SALK_114456 | SALK_021832 | SALK_125505 | SALK_022584 | SALK_062847 | SALK_148208 | SALK_016312 | CS24090 | SALK_083600 |
| Species Group: | Plant |
Factors:
| Local Sample ID | MB Sample ID | Factor Level ID | Level Value | Factor Name |
|---|---|---|---|---|
| 343813 | SA000692 | FL000263 | SALK_125505 | genotype |
Collection:
| Collection ID: | CO000013 |
| Collection Summary: | - |
| Sample Type: | Plant |
Treatment:
| Treatment ID: | TR000021 |
| Plant Growth Support: | Seeds (between 14 and 16) are sown on media in 100 x 100 x 15mm square Falcon Petri Dishes (Fisher Scientific, catalogue #08-757-11A). Seeds were arranged on the plates in a single horizontal line at the 1-cm mark from the top of the plate. Each plate contains between 20 and 25-ml of sterile MS media containing 0.1% (w/v) sucrose. Prior to sowing, seeds were sterilized by treating for 1-minute at room temperature with a 300-l solution of 50% (v/v) ethanol, this solution was removed and replaced with a 300-l solution consisting of 1% (v/v) Tween 20 (Fischer BioReagents, catalogue #BP33750), and 50% (v/v) bleach solution (Clorox), and incubated at room temperature for 10-minutes. The seeds were then washed with three changes of 0.3-ml of sterile water. Upon sowing with seeds, the plates were wrapped with Micropore tape (3M Health Care, catalogue #1530-0), and then stored horizontally for 4-days at 4°C, with illumination of 1 mol/m2. On the 5th day, plates were moved to the growth room, and held in a vertical position in Plexi-glass holders for 17-days. This growth room condition is labeled in Table I. On 18th day Petri plates were opened and the aerial portions of these plants were harvested immediately upon plate opening. Upon harvesting, plant material was quenched by immersion in liquid nitrogen and stored at 70°C. |
| Plant Plot Design: | Seeds (between 14 and 16) are sown on media in 100 x 100 x 15mm square Falcon Petri Dishes (Fisher Scientific, catalogue #08-757-11A). Seeds were arranged on the plates in a single horizontal line at the 1-cm mark from the top of the plate. |
| Plant Light Period: | 24h a day at 80 fluence |
| Plant Humidity: | Day 100%, Night 100% |
| Plant Temp: | Day 24 C, Night 24 C |
| Plant Nutritional Regime: | Each plate contains between 20 and 25-ml of sterile MS media: 0.1% sucrose, 1x MS vitamins, 4.3 g MS salt pH 5.7 with 15 g/L Bacto agar |
| Plant Metab Quench Method: | immersion in liquid nitrogen and stored at 70C |
| Plant Harvest Method: | On 18th day Petri plates were opened and the aerial portions of these plants were harvested immediately upon plate opening |
Sample Preparation:
| Sampleprep ID: | SP000026 |
| Sampleprep Summary: | - |
Combined analysis:
| Analysis ID | AN000030 |
|---|---|
| Analysis type | MS |
| Chromatography type | GC |
| Chromatography system | Agilent 6890N |
| Column | |
| MS Type | EI |
| MS instrument type | GC-TOF |
| MS instrument name | Leco Pegasus III GC TOF |
| Ion Mode | POSITIVE |
| Units | Peak height |
Chromatography:
| Chromatography ID: | CH000013 |
| Chromatography Comments: | Gas Chromatograph (GC) Methods quick-splitless_working |
| Instrument Name: | Agilent 6890N |
| Chromatography Type: | GC |
MS:
| MS ID: | MS000029 |
| Analysis ID: | AN000030 |
| Instrument Name: | Leco Pegasus III GC TOF |
| Instrument Type: | GC-TOF |
| MS Type: | EI |
| MS Comments: | Mass Spectrometer (MS) Methods quick_1700V |
| Ion Mode: | POSITIVE |
