Summary of Study ST000816

This data is available at the NIH Common Fund's National Metabolomics Data Repository (NMDR) website, the Metabolomics Workbench, https://www.metabolomicsworkbench.org, where it has been assigned Project ID PR000581. The data can be accessed directly via it's Project DOI: 10.21228/M8K39M This work is supported by NIH grant, U2C- DK119886.

See: https://www.metabolomicsworkbench.org/about/howtocite.php

This study contains a large results data set and is not available in the mwTab file. It is only available for download via FTP as data file(s) here.

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Study IDST000816
Study TitleLipidomics of Chronic Kidney Disease progression
Study TypeMS analysis
Study SummaryAnalysis of blood plasma lipid composition in patients with diabetic kidney disease In this untargeted lipidomics study we are comparing the lipidomics profile of progressors versus nonprogressors. A subgroup of patients have a follow up samples and therefore their baseline data are comared to the follow up visit data.
Institute
University of Michigan
DepartmentBiomedical Research Core Facilities
LaboratoryMetabolomics core
Last NameKachman
First NameMaureen
Address6300 Brehm Tower, 1000 Wall Street, Ann Arbor, MI 48105-5714
Emailmkachman@med.umich.edu
Phone(734) 232-8175
Submit Date2017-07-13
Num Groups5
Total Subjects80
Raw Data AvailableYes
Raw Data File Type(s)wiff
Analysis Type DetailLC-MS
Release Date2018-02-07
Release Version1
Maureen Kachman Maureen Kachman
https://dx.doi.org/10.21228/M8K39M
ftp://www.metabolomicsworkbench.org/Studies/ application/zip

Select appropriate tab below to view additional metadata details:

Project:

Project ID:PR000581
Project DOI:doi: 10.21228/M8K39M
Project Title:Diabetes and Chronic Kidney Disease progression
Project Type:MS analysis
Project Summary:Metabolomics of Chronic Kidney Disease progression
Institute:University of Michigan
Department:UMich Internal Medicine
Laboratory:Pennathur Lab
Last Name:Pennathur
First Name:Subramaniam
Address:University Michigan, 2900 Huron Parkway, Ann Arbor, MI 48105
Email:spennath@umich.edu
Phone:734 615 5757

Subject:

Subject ID:SU000842
Subject Type:HUMAN
Subject Species:Homo sapiens
Taxonomy ID:9606
Species Group:Human

Factors:

Subject type: HUMAN; Subject species: Homo sapiens (Factor headings shown in green)

mb_sample_id local_sample_id Progressors
SA045194S00018013Non-progressor | Visit:Baseline
SA045195S00018009Non-progressor | Visit:Baseline
SA045196S00017997Non-progressor | Visit:Baseline
SA045197S00017993Non-progressor | Visit:Baseline
SA045198S00018001Non-progressor | Visit:Baseline
SA045199S00018005Non-progressor | Visit:Baseline
SA045200S00017989Non-progressor | Visit:Baseline
SA045201S00017985Non-progressor | Visit:Baseline
SA045202S00018021Non-progressor | Visit:Baseline
SA045203S00018017Non-progressor | Visit:Baseline
SA045204S00018002Non-progressor | Visit:Followup
SA045205S00018006Non-progressor | Visit:Followup
SA045206S00018022Non-progressor | Visit:Followup
SA045207S00018010Non-progressor | Visit:Followup
SA045208S00018018Non-progressor | Visit:Followup
SA045209S00017990Non-progressor | Visit:Followup
SA045210S00017986Non-progressor | Visit:Followup
SA045211S00018014Non-progressor | Visit:Followup
SA045212S00017994Non-progressor | Visit:Followup
SA045213S00017998Non-progressor | Visit:Followup
SA045214S00018051Non-progressor | Visit:NA
SA045215S00018053Non-progressor | Visit:NA
SA045216S00018047Non-progressor | Visit:NA
SA045217S00018039Non-progressor | Visit:NA
SA045218S00018037Non-progressor | Visit:NA
SA045219S00018041Non-progressor | Visit:NA
SA045220S00018043Non-progressor | Visit:NA
SA045221S00018055Non-progressor | Visit:NA
SA045222S00018045Non-progressor | Visit:NA
SA045223S00018049Non-progressor | Visit:NA
SA045224S00018065Non-progressor | Visit:NA
SA045225S00018075Non-progressor | Visit:NA
SA045226S00018073Non-progressor | Visit:NA
SA045227S00018077Non-progressor | Visit:NA
SA045228S00018079Non-progressor | Visit:NA
SA045229S00018083Non-progressor | Visit:NA
SA045230S00018081Non-progressor | Visit:NA
SA045231S00018071Non-progressor | Visit:NA
SA045232S00018069Non-progressor | Visit:NA
SA045233S00018061Non-progressor | Visit:NA
SA045234S00018059Non-progressor | Visit:NA
SA045235S00018063Non-progressor | Visit:NA
SA045236S00018033Non-progressor | Visit:NA
SA045237S00018067Non-progressor | Visit:NA
SA045238S00018057Non-progressor | Visit:NA
SA045239S00018035Non-progressor | Visit:NA
SA045240S00018025Non-progressor | Visit:NA
SA045241S00018029Non-progressor | Visit:NA
SA045242S00018027Non-progressor | Visit:NA
SA045243S00018031Non-progressor | Visit:NA
SA045244S00017995Progressor | Visit:Baseline
SA045245S00018015Progressor | Visit:Baseline
SA045246S00018023Progressor | Visit:Baseline
SA045247S00018019Progressor | Visit:Baseline
SA045248S00018007Progressor | Visit:Baseline
SA045249S00018003Progressor | Visit:Baseline
SA045250S00017999Progressor | Visit:Baseline
SA045251S00017987Progressor | Visit:Baseline
SA045252S00017991Progressor | Visit:Baseline
SA045253S00018011Progressor | Visit:Baseline
SA045254S00018004Progressor | Visit:Followup
SA045255S00018016Progressor | Visit:Followup
SA045256S00018008Progressor | Visit:Followup
SA045257S00018012Progressor | Visit:Followup
SA045258S00018000Progressor | Visit:Followup
SA045259S00017996Progressor | Visit:Followup
SA045260S00018024Progressor | Visit:Followup
SA045261S00017992Progressor | Visit:Followup
SA045262S00017988Progressor | Visit:Followup
SA045263S00018020Progressor | Visit:Followup
SA045264S00018080Progressor | Visit:NA
SA045265S00018082Progressor | Visit:NA
SA045266S00018084Progressor | Visit:NA
SA045267S00018068Progressor | Visit:NA
SA045268S00018070Progressor | Visit:NA
SA045269S00018074Progressor | Visit:NA
SA045270S00018072Progressor | Visit:NA
SA045271S00018066Progressor | Visit:NA
SA045272S00018076Progressor | Visit:NA
SA045273S00018078Progressor | Visit:NA
SA045274S00018058Progressor | Visit:NA
SA045275S00018040Progressor | Visit:NA
SA045276S00018042Progressor | Visit:NA
SA045277S00018026Progressor | Visit:NA
SA045278S00018028Progressor | Visit:NA
SA045279S00018038Progressor | Visit:NA
SA045280S00018034Progressor | Visit:NA
SA045281S00018030Progressor | Visit:NA
SA045282S00018036Progressor | Visit:NA
SA045283S00018044Progressor | Visit:NA
SA045284S00018046Progressor | Visit:NA
SA045285S00018032Progressor | Visit:NA
SA045286S00018060Progressor | Visit:NA
SA045287S00018062Progressor | Visit:NA
SA045288S00018056Progressor | Visit:NA
SA045289S00018054Progressor | Visit:NA
SA045290S00018048Progressor | Visit:NA
SA045291S00018050Progressor | Visit:NA
SA045292S00018052Progressor | Visit:NA
SA045293S00018064Progressor | Visit:NA
Showing results 1 to 100 of 100

Collection:

Collection ID:CO000836
Collection Summary:-
Sample Type:Blood

Treatment:

Treatment ID:TR000856
Treatment Summary:-

Sample Preparation:

Sampleprep ID:SP000849
Sampleprep Summary:-
Sampleprep Protocol Filename:A004_-_Shotgun_Lipidomics.pdf

Combined analysis:

Analysis ID AN001293 AN001294
Analysis type MS MS
Chromatography type Reversed phase Reversed phase
Chromatography system Shimadzu CTO-20A Nexera X2 Shimadzu CTO-20A Nexera X2
Column Waters Acquity HSS T3 (50 x 2.1mm,1.8um) Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
MS Type ESI ESI
MS instrument type TOF TOF
MS instrument name ABI Sciex 5600+ TripleTOF ABI Sciex 5600+ TripleTOF
Ion Mode NEGATIVE POSITIVE
Units peak area peak area

Chromatography:

Chromatography ID:CH000906
Instrument Name:Shimadzu CTO-20A Nexera X2
Column Name:Waters Acquity HSS T3 (50 x 2.1mm,1.8um)
Column Temperature:55
Flow Rate:0.400uL/min
Solvent A:40% acetonitrile/60% water; 10 mM ammonium acetate
Solvent B:10% acetonitrile/5% water/85% isopropanol; 10 mM ammonium acetate
Chromatography Type:Reversed phase

MS:

MS ID:MS001186
Analysis ID:AN001293
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:TOF
MS Type:ESI
Ion Mode:NEGATIVE
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
  
MS ID:MS001187
Analysis ID:AN001294
Instrument Name:ABI Sciex 5600+ TripleTOF
Instrument Type:TOF
MS Type:ESI
Ion Mode:POSITIVE
Analysis Protocol File:A004_-_Shotgun_Lipidomics.pdf
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